>input_sequence_61932
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---------------------------------ATG------AGCAGCAGC---TTGGCGTCCGCCATTTCTGCAGCAGC
CACTGCTGCTTGTCCCCGCCATGGCGCGGCGAAGCAGCAGCTGAGCACAAGGGTGAAGCCACACCTGAAGCATGCTGCAG
GCTGCTGGGAGAGCAGTGGCAGCGGC------AGGGCGGTGGTGGCGAGGGCCGGGCCCGGGCCGCTGACGGAGATCGAG
CCGGACCTGCAGGAGGACCCCATCGACAAGTGGCGCACCAACGGCGTCCTCCCGGTCTGGAGCGGTTTCCTTGGTTTTCT
TGTTCTTGCTGCTGTGTGTTGTCTGAAGAATTGGGATGACACTGGAGTGAAATTGTTTTGCAGGAAGACTTTGTGTATGG
AGTGTATGACGGCCACCACACCTATGATGAAGGCCAAGGTCTCTTATCTTGTGTATTATCTTGTATACAGAATAAACTAT
ATGTATGCGTTTCTCTAGCTAAAAGCTGCGCTGATTCTGGTGTGATGTGGT-GAAACCAATCATCCAACTGAAGAAAAGA
AGGGCTTCTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAGCCTCCTCAGGGCTTCCAAGGTACACTCACTCATGGT
GCCTCTTGCTATCTGGAAACAGTA-TACATGTCCTTGAACCTTTCTCATTAGCATCAGTGGAAATCTCTTGCAGCACTCA
TCTCCTGGGCATTCCCTCCCGCAGTCATCCTCGGAATGGCTTTCGATGTGCCGGTACGGATTGAGTAGTTCCATTAACCT
CTAATACTCCTATTTACATGCATC----ATCTGTCTTGGGCTCACTGAACGGAGGAAGACTCATGGTCTATCCGTGCCAC
CAGGGGGAGTACCTTTACATTGGGGCAGCTATCTTCATCGTCATGTTCTGCGTCATCGAGATGGACAAGCCGGACAAACC
GCACAACTTTGAGCCGGAGATCTACATGATGGAGAGGTCCAAGCGCGACAAGCTCATCGCAGACTACAACTCCATGGACA
TCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCAACAGAGATGACCTCATCCAACCATAG------
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>chr3B_1_TraesCS3B01G477300
TTGGTATTGTTACAAGAGTGAGTTCTTACAGCCTTTTCTTGTATTGCTTCATACTTGCATTGGCCGTCATATGAAAGGTT
CTTACAATCATAATTTGCAGATTTTGCACTAAAACAATAACAGAATCCAAAAGTTTTTTATGGCATTACCCATCGTATTG
TTATCCCTTTTATCTCTTTTCATATTAATAAACTCGATGGTGTATTCAGGATTCTATAGGAAGAATTGTTTGCGTTCCTC
TAAAGCGATCCAATGAGATCATTGGTGCTACTACCGAGGAGCTGGTTATGAAATTCAGACAAAGCTAGTAAACTCAATTT
GAACCAGGTAATCTTCTTGTAAACTCCTGACCAGCTGTTGGCATTCTAAGGTTTCTGAATTTCTCCAAGAAGTGCTGACA
TGCTGACACTAGGTCTTTT-CATTTTAAGGGGGCAGGTACATCCTGGCTGGAAGCGGAATAGTTCTGCTACAGAGGTTGA
GGAGAGACGCGGCTGTGATTTGGTCGTAGATTCTTCTGTATTATGTAGTATTTGAAGTGCGGTGTCGTAGAT--------
---------------------------------------GTGTGGTGTAAGAATTAAATATCTCCTACTGGAGCAAATGT
G--GAGATGTTCAAGGAAGTGCTGTGTTTGCACATTGATTTAAGTTAATAAAGAAAAGAAATTCCCTGCATTGGTTTTGC
TGGATCTGTTCTGCTCCACATGTT-----GCTGGGGTATTTTCCTTCCCCTTATGTGT-GAACATAAAGTTCTGTGAGCA
TACAGTAACTTAACAGGGTGGTTTACTAATCACAATATAATCATTTGTCCAGCCATGTAACAGTTTCTGTGAGTTGATTA
CTGGCGAGTTTAC---------------AGATATCAAGGAAAAGGAGAAAGAAAAGCAGCAAAATTTTCTGGACGGTACA
TGTCCAAACCATATCCACTTGCCCTTGTCTGTTTGCAGGGAGGTACATGTGCAGGAGAAACAAGCGA--AGGGTGTGGAG
AAGAGGGGAGGCACAGCATTTGGGGGTGAGATAATG------AGCAGCAGC---TTGGCGTCCGCCATTTCTGCAGCAGC
CACTGCTGCTTGTCCCCGCCATGGCGCGGCGAAGCAGCAGCTGAGCACAAGGGTGAAGCCACACCTGAAGCATGCTGCAG
GCTGCTGGGAGAGCAGTGGCAGCGGC------AGGGCGGTGGTGGCGAGGGCCGGGCCCGGGCCGCTGACGGAGATCGAG
CCGGACCTGCAGGAGGACCCCATCGACAAGTGGCGCACCAACGGCGTCCTCCCGGTCTGGAGCGGTTTCCTTGGTTTTCT
TGTTCTTGCTGCTGTGTGTTGTCTGAAGAATTGGGATGACACTGGAGTGAAATTGTTTTGCAGGAAGACTTTGTGTATGG
AGTGTATGACGGCCACCACACCTATGATGAAGGCCAAGGTCTCTTATCTTGTGTATTATCTTGTATACAGAATAAACTAT
ATGTATGCGTTTCTCTAGCTAAAAGCTGCGCTGATTCTGGTGTGATGTGGT-GAAACCAATCATCCAACTGAAGAAAAGA
AGGGCTTCTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAGCCTCCTCAGGGCTTCCAAGGTACACTCACTCATGGT
GCCTCTTGCTATCTGGAAACAGTA-TACATGTCCTTGAACCTTTCTCATTAGCATCAGTGGAAATCTCTTGCAGCACTCA
TCTCCTGGGCATTCCCTCCCGCAGTCATCCTCGGAATGGCTTTCGATGTGCCGGTACGGATTGAGTAGTTCCATTAACCT
CTAATACTCCTATTTACATGCATC----ATCTGTCTTGGGCTCACTGAACGGAGGAAGACTCATGGTCTATCCGTGCCAC
CAGGGGGAGTACCTTTACATTGGGGCAGCTATCTTCATCGTCATGTTCTGCGTCATCGAGATGGACAAGCCGGACAAACC
GCACAACTTTGAGCCGGAGATCTACATGATGGAGAGGTCCAAGCGCGACAAGCTCATCGCAGACTACAACTCCATGGACA
TCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCAACAGAGATGACCTCATCCAACCATAGGTGCCA
TTCAGAAACGATGGTCGCATTGGCTAGATTCAGAAATGGAGGTCAGTTCAGATGACATGTATGATAGTGATATAAGCACT
CTCTAAGGAAATCAGGTATGGCATAGCTCCAAGAAAAGGATCTTCAAACAAAGCAACCTTGTAAAAAATGCAGAGCAGAT
TGTCAGGAAACACTATGCTACTA---ATGGCAAATGTCTAAAATTGTAGAGATATATAAAGTTACCAGTTTGGCGCTACT
CTCTCGGTGTTACAAAAGTCTAGCAAAAAAGAATTGTCATTCTTTTTTGTACAAGTTGAAACCCTATGTCGAATA--ACG
AAGAAAATAAACCAGGGGTGAAAAGGGAAGCCTAACAGCTCCTCCTTTTTTGTACACTTGAGTTGCACAGCTGGTGATGA
GCTGGCTCAATATGAGAAGAAACTAATGGGGCAAAATTGGAGCTAGAATAGCTAATCTATAACCCTGAAAGAGGAAACCT
AGCTTAGCCTTTGAAATGCTATAACTTTCCATGCTTCTTCATCTTGGTGATGTGAAGAGCTGGCTGCCTAGGGTCACAGT
TGTGTCGCCCACTGGCATGCCTGTCGTCCTCCTGATCTCCTGCTTGCGTATCCGGTGTATCTCAGCTTCCACCAGGCTCA
TCGACGGACGATTCTCGCTTGTCGGGTTCACGCACCGCAATGCCAAGCGCAACAATTCCTTCATGCCTTGTGGGGTAAAG
CCACTGGTCATTCTCCTATCTGCTATTGTAGAGATATCACTTGATTCTTGAAAGTTTTGAACCTGCATATCAGAGATGGA
TAGTAAGCAAACTGAAACCTTGGCTCTGGTATGATGATAGATATTATGAGAATGATATGGAAAAGAAAAATTGAACAATC
ATCAGGAATCAGTAGAATTTACCCATTCAATAATGCCTTGATCAGACGCAGCCGTCCTTCCACTGATCAACTCCACAAGG
AACACACCAAAACTGTAGACATCACTCTGTATGGAAAAA
>chr3A_1
TTGGTATTGTTACAAGAGTGAGTTCTTACAGCCTTTTCTTGTACTGTTTCATACCTGCATTGCCAGTCATATGAAAGGTT
CTTACAATCATAATTTGCAGATTTTGCAATAAAACAATGACAGAATCCAAAATTTTTTTATGACATTACCCATCGTATTG
TTATCCCTTTTATCTCTTTTCATATTAATAAACTCGATGGTGTGTTCAGGATTCTATAGGAAGAATTGTTTGCGTTCCTC
TAAAGCGATCCAATGAGATCATTGGTGCTACTACTGAGGAGCTGGTTATGAAAGCAAGACAAAGCTAGTAAACTCGATTT
GAACCAGGTAAACTTCTTGTAAACTCTTGGCCAGCTGTTGGCATTGTAATGTTTCTGGATTACTCCAAGAAGTGCTGACA
TGCTGATACTTAGTTTGTTCCATTTTAAGGGGGCAAGTACATCCTGGCTGGAAGCGGAATAGTTCTGCTACGGAAGTTGA
GGAGAGACGCGACTGTGATTTGGTCGTAGATTCTTCTGTATTATGTAGTATTTGAAGTGCGGTGTCGTAGAT--------
---------------------------------------GTGTGGTGTAAGAATTAAATATCCCCTACTCGAACAAATAT
G--GAGATGTTCAAGGAAGTGTTGTGTTTGCACATTGATT-AAGTTATTAAAGAAAAGAAATTCCCTGGATTGGTTTTGC
TGGATCTGTTCTGCTCCACATGTT-----GCTGGGGTATTTTCCTTCCCCTTATGCGTAAAACATAAAGCCCTGTGAGCA
TACAGTAACTTAACAGGGTGGTTTACTAATCACAATATAATCACTTGTCCAGCCATGTAACAGTTTCTGTGAGTTGATTA
CTGGTGAGTTTAC---------------AGATATCAAGGAAAAGGAGAAAGAAAAGCAGCAAAATTTTCTGGACGGTACA
TGTCCAAACCATATCCACTTGCCCTTGTCTGTTTGCAGGGAGGTACATGTGCAGGAGAAGCAAGCGAAGAGGGTGTGGAG
AAGAGGGG-GGCACAGCGTTTGGGGGTGAGATAATGAGCAGCAGCAGCAGC---TTGGCGTCCACCATTTCTGCAGCAGC
CACTGCTGCTCGTCCTCGCCATGGCGCGGCGAAGCAGCAGCTGAGCACAAGGGTGAAGCCACACCTGAAGCATGCTGCAG
GCTGCTGGGAGAGCAGCGGCAGCGGC------AGGGCGGTGGTGGCGAGGGCTGGGCCCGGGCCGCTGACGGAGATCGAG
CCGGACCTGCAGGAGGACCCCATCGACAAGTGGCGCACCAACGGCGTCCTCCCGGTCTGGAGCGATCCCCTTGGTTTTCT
TGTTCTTGCTGCTGTGT--TGTCTGGGGAATTGGGATGACACTGGAGTGAAATTGTTTTGCAGGAAGACTTTGTGTATGG
AGTGTATGATGGCCACCACACCTATGATGAAGGCCAAGGTA--TTATCTGGTATATTTTCTTGTATACAGCATAAACTAT
ATGCATTCGCTGGCTG----AAAGTTTGTGCTGATTCTGATATGATGTGGTGGAAACCAATCATCCAACTGAAGAAAAGA
TGGGCTTCTGGGAGGATGTTTCTGAGTGGTACCAAGAAGCTGAGCCTCCACAGGGATTCCAAGGTACACTCACTCATGGT
GCCTTTTGCTATCTGGAAACAGTATTACATGTCCTTGAATCTTTCTCATTAGCATCAACGGCAATCTCTTGCAGCACTCA
TCTCCTGGGCATTCCCTCCTGCAGTCATCCTCGGAATGGCTTTCGATGTGCCGGTATGGATTGAGTAGTTCCATTAACCT
CTAATCCTCCTATTTACATGCATC----ATCTGTCTTGGGCTCACTGAACGAAGGAAGACTCGTGGTCTATTTGTGCCAC
CAGGGAGAGTACCTTTACATTGGGGCAGCTATCTTCATCGTCGTGTTCTGCGTCATCGAGATGGACAAGCCGGACAAACC
GCACAACTTTGAGCCGGAGATCTACATGATGGAGAGGTCCAAGCGCGACAAGCTCATCGCAGACTACAACTCCATGGACA
TCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACTGTCAACAGAGATGACCTTATCCAACCATAGGTGCCA
TTCAGAAATGGTGGTCGCATTGGCTAGATTCAGAAATGGAGGTCAGTTCAGATGACATGTATGATAGTGATATAAGCACT
CTCTAAGGAAATCAGGGATGGCATAGCTCCAAGAAAAGGATCTTCAAATAAAGCATCCTTGTAAAAAATGCAGAGCAAAT
TGTCAGAAAAGACCATACTACAA---ATGGCAAATGTCTAAAATTGAAGAGATATATAAAGTTGCCAGTTTGGCGCTACC
CTCTCGATGTTACAAAAGTCTAGCAAAAAAGAATTGTCATTCTTTTTTGTGCAAGTTGAAACCCTATGTCGAATACAACG
AAGAAAATACACCAGGGGTGAAAAGGGAAGCCTAACAGCTCCTCCTTTTTTGTACACTTGAGTTGCACAGCTGATGATGA
GCTGGCTCACTATGAGAAGAAACTAATGGGGCAAAATTGGAGCTAGAATAGCTAATCTATAACCCTGAAAGAGGAAAACT
AGCTTAGCCTTTGAAATGCTATAACTTTCCATTCTTCTTCATCTTGGTGATGTGAAGAGCTGGCTGCCTAGGGTCACAGT
TGTGTCGCCCACTGGCATGGCTGTCGTCCTCCTGATCTCCTGCTCGCGTATCCGGTGTATCTCGGCTTCCACCAGGCTCA
TCGACGGACGATCCTCGCTTGCCGGGTTCACGCACCGCGATGCCAAGCGCAACAATTCCTTCATGCCTCGTGGGGTAAAG
CCGCTGGTCATTCTCCTATCTGCTATTGCAGAGATTTCACTTGATTCTTGAAAGTTCCGAACCTGCATATCAGAGATGGA
TAG--------------------------TATGGTGATAGATATTATGAGAATAATATGGCAAAGAGGAATTGAACAATC
ATCAGGAATCAGTAGAATTTACCCATTCAATAATGCCTTGATCAGACGCAGCCGTCCTTCCACTGATCAACTCCACAAGG
AACACACCAAAACTGTATACATCACTTTGTATGGAAAAA
>chr3D_1
TTGGTATTGTTACAAGAGTGAGTTCTTGCAGCCTTTTCTTGTATTGCTTCATACTTGCATTGGCAGTCATATGAAAGGTT
CTTACAATCATAATTTGCAGATTTTGCACTAAAACATTGACAGAATCCAAAAGTTTTTTATGGCATTACCCATCATATTG
TTATCCCTTTTATCTTTTTTCATATTAATAAACTCGATGGTGTATTCAGGATTCTATAGGAAGAATTGTTTGCGTTCCTC
TAAAGCGATCCAATGAGATCATTGGTGCTACTACCGAGGAGCTGGTTATGAAAGCCAGACAAAGCTAGTCAACTCAGTTT
GAACCAGGTAATCTTCTTGTAAACTCTTGACCAGCTGTTCGCATTCTAATGTTTCTGGATTACTCCAAGAAGTGCTGACA
TGCTGACACTAA-TTTGTTTCATTTCAAGGGGGCAAGTACATCCTGGCTGGAAGCGGAATAGTTCTCCTACGGGAGTCGA
GGAGAGACGCGGCTGTGATTTGGTCATAGATTCTTCTGTATTATGTAGTATTTTAAGTGCGGTGAAGAATTATTTTTGCG
TAGAAGTGTGGTGTAAGAAGTTTTTTCTTTTGCGTGGAAGTGTGTTGTAAGAATTTTAAATCTCCCTCTGGAACAAATGC
GGAGAAATGTTCAAGGAATTGCTCTGTTTGTACATTGGTC-AAGTTAATAATGAAAAG-AATTCCCTGCGTTGCTTTGGC
TGGATCTGTTCGGCTCCACATAAAGACCCGCTGTGCTATTTTCCTTCCCCTTATGTGC-AAACATAAACCCCTGTGAGGA
TGCAGTAATTTAGCAGGCAGTCGACGACCAGAAGACTGCAGT-----------CATGTAACAGTTTCTGTGAGTTGATTA
CTGGTGAGTTTACATTCGTCTAATTTGCAGATTTCAAGGAAAAGGAGAAAGAAAGACGGCAGAATTTTCTGGACGGTACA
TGTCCAAACCATATCCACTTGCCCTTGTCTGTTTGCAGGGAGGTACATGTGCAGGAGAAACAAGCGAAGAGGGTGTGGAG
AAGAGGGG-G-CACAGCGTCTGGGGGTGAGATAATGAGCAGCAGCAGCAGCAGCTTGGCGTCCACCATTTCTGCAGCAGC
CACTGCTGCTCGTCCTCGCCATGGCGCGGTGAAGCAGCAGCTGAGCGCTAGGGTGAAGCCACACCAGAAGCATGCTGCAG
GCTGCTGGGAGAGCAGTGGCAGCGGCAGCAGCAGGGCTGTGGTGGCGAGGGCTGGGCCCGGGCCGCTGACGGAGATTGAG
CCGGACCTGCAGGAGGACCCCATCGACAAGTGGCGCACCAACGGCGTCCTCCCGGTCTGGAGCGATTTCCTTGGTTTTCT
TGTTCTTGCTGCTGTGT--TGTCTGAGGAATTGGGATGACGCTGCAGTGAAATTGTTTTGCAGGAGGACTTTGTGTATGG
AGTGTATGACGGCCACCACACCTATGATGAAGGCCAAGGTCTCTTATCTTGTGTATTATCTTGTATACAGAACAAATTAT
ATGCATGCGTTTCTTTAGCTAAAAGTTGTGCTGATTCTAATGTGATGTGGT-GAAACCAATCATTCAACTGAAGAAAAGA
AGGGCTTCTGGGAGGATGTCTCTGAGTGGTACCAAGAAGCTGAGCCTCCTCAGGGCTTCCAAGGTACACTCACTCATGGT
GCCTTTTGCTATCTGGAAACAGTA-TACATGTCCTTGAATCTTTCTCATTAGCATCAATGGCAATCTCTTGCAGCACTCA
TCTCCTGGGCATTCCCTCCCGCAGTCATCCTCGGAATGGCTTTCGATGTGCCGGTACGGATCGAGTAGTTCCATTAACCC
CTATTCCTCCTATTTACATGCATCATCTATCTGTCTTGGGCTTACTGAACGGAGGAAGACTCATGGTCTATTTGTGTCAC
TAGGGGGAGTACCTTTACATTGGGGCAGCTATCTTCATCGTCGTGTTCTGCGTCATCGAGATGGACAAGCCGGACAAACC
GCACAACTTTGAGCCGGAGATCTACATGATGGAGAGGTCCAAGCGCGACAAGCTCATCGCGGACTACAACTCCATGGACA
TCTGGGACTTCAACGAGAAGTACGGCGAGCTCTGGGACTTCACCGTCAACAGAGATGACCTCATCCAACCATAGGTGCCA
TTCAGAAATGGTGGTCGCGTTGGCTAGATTCAGAAATGGAGGCCAGTTCAGATGACATGTATGATAGTGATATAAGCACT
CTCTAAGGAAATCAGGGATGGCATAGCTCCAAGAAAAGGATCTTCAAATAAAGCATCCTTGTAAAAAATGCAGAGCAAAT
TGTCAGAAAACACTATGCTACTAAGGATGGCAAATGTCTAAAATTGTAGAGATATATAAAGTTGCCTGTTTGGCACTACC
CTCTCGATGTTACAAAAGTCTAGCAAAAAAGAATTGTCATTCTTTTTTGTACAAGTTGAAACCCTATGTCGAATA--ACG
AAGAAAATAAACCAAGGGTGAAAAGGGAAGCCTAACAGCTCCTCCTTTTTTGTACACTTGAGTTGCACAGCTGATGATGA
GCTGGCTCGCTATGACAAGAAACTAATGGGGCAAAATTGGAGCTAGAATAGCTAATCTATAACCCTGAAAGAGGAAA-CT
AGCTTAGCCTTTGAAATGCTATAACTTTCCATTCTTCTTCATCTTGATGATGTGAAGAGTTGGCTGCCTAGGGTCACAGT
TGTGTCGCCCACTGGCATGGCTGTCGTCCTCCTGATCTCCTGCTCGCGTATCCGGTGTATCTCGGCTTCCACCAGGCTCA
TCGACGGACGATCCTCGCTTGTCGGGTTCACGCACCGCGATGCCAAGCGCAACAATTCCTTCATGCCTTGTGGGGTAAAG
CCACTGGTCATTCTCCTATCTGCTATTGCAGAGATTTCACTTGATTCTTGAAAGTTCCGAACCTGCATATCAGAGATGGA
TAGTAAGCAAACTGAAACCTTGGCTCTGGTATGATGATAGATATTATGAGAATAATATGGAAAAGAGGAATTGAACAATC
ATCAGGAATCGGTAGAATTTACCCATTCAATAATGCCTTGATCAGACGCAGCCGTCCTTCCACTGATCAACTCCACAAGG
AACACACCAAAACTGTATACATCACTTTGTATGGAAAAA
>SNPs
----------------------------------------------------------------S---------------
--------------------------------------S-----------------------------------------
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-----------------------------------------------------SS-------------------------
--------------------------S----------------------S-------S---S------------------
-----------S--S-S------------------S-----------------------------------S--S-----
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------------------------------------------------------------------------S-------
----------------------------------------S---------------------------------------
-----------------------------------------------------------S---------SS---------
-------------------------------------------S------------------------------------
----S---------------------------------------------------------------------------
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--------S--------S---------------------------------------------S----------------
----------S----S----------------------------------------------------------------
----------------------------------------------------S---------------------------
----------------------------------------------------------------S---------------
-----------------SS-------S-----------------------------------------------------
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---S----------S----------S--S----------S----------------------------------------
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----S----------------------------------S-----------------S---S------------------
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-----S-----------------------------------------------------------------SS-------
------------------------------------------S-------------------------------------
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--------S-S---------------------------------------------------------------------
----------------S-------------------------------S------S---------------------S--
------S--------------------------------------------------------S---------------S
------S-------------------------------------------------------------------------
-------------------------------------------------------------------------S------
---------S-------------------------------------------------------------------S--
--------------------------------S-----------------------------------------------
-------------------S------------------------S------------------S----------------
------------S-------------------------S-----------------------------------------
----------------------------S------S--------------------SS----------------------
-----------------------------------------------------S------------SS------------
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-----------------S--------S------------
>forward_1049
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----------------------------------------------------------------------GGGTGTGGAG
AAGAGGGGA-----------------------------------------------------------------------
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>reverse_2384
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---------------------------------------------------------------ACCAGTTTGGCGCTACT
CTC-----------------------------------------------------------------------------
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