>input_sequence_61871
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-----------------------------------------------------------------ATGGACCATGGCGGT
---------GGCGGCGGCAGGAGTAGCAGCCGCCTCCGGGACCGTCTGGCCCGGATGTTCCGTCCGGGCTCGCTGCTCCG
CTCGACCTGCAACAACAACACCGCGTCGACCTCCTCCTCCTCCTCCTGCTCCGCCGCGGTGGGCGCGGCAGCCGACGGGG
TGACCGCGTCCAAGCCGCCCCCGAGCTCCGTCTGCTCCTCCAGCCGCGCGCTCTTGGCCGCCGACTCCGCCATCTCCCGC
GACAGGGACTCGTTCCTTACCTCTTCTCGCCGCGACTACGCCACCATCGTTGGCCGCACCGAGTCCTTCTCCAACGCCCT
CGACCGCGTGCACCGCCGCGCCGGCGCCGCGGTGCATTCTCTGCCGCCTCCGGCTCGCTTCTCCATGCACGCGTCGCCTC
TGATGGAGAGCAAGAAAAAGAGCCCTCTCCACGGCAGTCATCGGCACCACCGCCACCGCCTCGGTGGCCGGGTCAAGGGC
GACAAGAGCAAGAAGCTGCTCTCCAACAACCCCTATGGCTTCAGCACCTCGGACACCGACGGCGACGACGTCTTCAGCAG
CGACGCTGACGAGCACGGCCGCAGCGACGCCAAGAAGGGGGACGCGGAGGCATTCTTCTCCTCCTCCAGAAGCTTCTCCT
TCTCCTCCGACTCCTCCGAGTTCTACAGCAAGAAGAAGAAACCAAAGAAG---TCCCCTGCCGCAGTGGCGCCCAAGCCG
CCGCCGCCGCCGCCGCCGAGAGCGAGGGCCAGGGGGCAGAGGCGCAAGAATCGCGTGGCGAGCAGCTGCGACACGTGCGG
CGTGAGGGAAGGGTTCCGGCCGGTGGTGTCGGCGGCGGAGGAGCAGGTGCGCAGGGGGTTCGCGGTGGTGCAGCGGTCGC
GGGACCCCTACGCCGACTTCCGGGCGTCGATGGTGGAGATGGTGGTGAGCCGGCAGATGTTCGGCGCGGTGGAGCTGGAG
CGGCTGCTGCGGTCGTACCTCTCGCTCAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGT
CGTCCTCCACGGCGGCTAG-------------------------------------------------------------
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-----------------
>chr3A_1_TraesCS3A01G151800
GGATGCATTGCATGTAGCAGGCGGGATCACGAAAAAGTGGTGGCAACAACACATGAGTGACTTCCATGGGGTTGCTACTC
GAACACCCGGTCTCGAGCTCCGGAGCGAAAGCCTATGTCAGACCCGAGTGGTTATACCTGGCAATGGCGATAT--ATTTT
CTTACGTCGTTATCTTATTGAAGACATTGCTCAGATATACTCAAACTGA-TCTCCAAGGTGAAAACCTAGATTTTGGCCT
TGTGGTTGGATCCGGTAATGACGACACTTGAGTGTCG---CTCCCTTC-TAAAGGCGTTGATGCTGAAAAACCTTGTCGT
CCATGTGGTGTCATGAGATGGTTGGTA-GGGTATGGTCATTACTCTAGTTTGTCGATCCTAGATCTAGTCACTTTGGGT-
---TTTTTT--TCCTCGTCTACGCAGGACTTTGGTCATATACGACTTTGCTGGTTGCCAACGTGTTTTTGCGTGTGTTTG
AGTTGATTT-----------------AGTATATATAAGTCGGATGTTTGCTCATTGTATTATGTACTTTCTTGATGCTCC
GTTTGAGTC---TACAAAATCCACTATTTGTCAGAAAAGAACAGT-CAGTAATTCGTTCGCCCCACCGTATATCATATCT
GGAATGCTGGATGATAACTCAGTGACAC----------------------------------------------------
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-------------TAAAATCTGTTTCAGAGTCAGTCCATAACGAAAATCTTGCATGATTTGCTCAGTGCTTCGGTGTC--
--AGTGATTCCATAACCGAATGCTTACATACATGCCAAAACATTCGTCGGCTTTATTATCCTTGCATAAACAAGAAAAAT
GC-ATGCCTTGATTAATAATTCGTCACGTGACACACTTTGTACGCACGGCTCGTAGTGCACGTAGTGTACTGGCAGCTCA
CGCTAGCCATTTCAAACCTTCCTTCGCTCCCGGCTCCATCTCCCACGGCTATATATAACATATAACACCGATGGCTCGGC
ACCAGTGCTCCCCTGCTTCCACAACCAACCAGTCCGGCGTCAAGTGAGCACCGACTGAGCTACCGATGGACCATGGCGGT
---------GGCGGCGGCAGGAGTAGCAGCCGCCTCCGGGACCGTCTGGCCCGGATGTTCCGTCCGGGCTCGCTGCTCCG
CTCGACCTGCAACAACAACACCGCGTCGACCTCCTCCTCCTCCTCCTGCTCCGCCGCGGTGGGCGCGGCAGCCGACGGGG
TGACCGCGTCCAAGCCGCCCCCGAGCTCCGTCTGCTCCTCCAGCCGCGCGCTCTTGGCCGCCGACTCCGCCATCTCCCGC
GACAGGGACTCGTTCCTTACCTCTTCTCGCCGCGACTACGCCACCATCGTTGGCCGCACCGAGTCCTTCTCCAACGCCCT
CGACCGCGTGCACCGCCGCGCCGGCGCCGCGGTGCATTCTCTGCCGCCTCCGGCTCGCTTCTCCATGCACGCGTCGCCTC
TGATGGAGAGCAAGAAAAAGAGCCCTCTCCACGGCAGTCATCGGCACCACCGCCACCGCCTCGGTGGCCGGGTCAAGGGC
GACAAGAGCAAGAAGCTGCTCTCCAACAACCCCTATGGCTTCAGCACCTCGGACACCGACGGCGACGACGTCTTCAGCAG
CGACGCTGACGAGCACGGCCGCAGCGACGCCAAGAAGGGGGACGCGGAGGCATTCTTCTCCTCCTCCAGAAGCTTCTCCT
TCTCCTCCGACTCCTCCGAGTTCTACAGCAAGAAGAAGAAACCAAAGAAG---TCCCCTGCCGCAGTGGCGCCCAAGCCG
CCGCCGCCGCCGCCGCCGAGAGCGAGGGCCAGGGGGCAGAGGCGCAAGAATCGCGTGGCGAGCAGCTGCGACACGTGCGG
CGTGAGGGAAGGGTTCCGGCCGGTGGTGTCGGCGGCGGAGGAGCAGGTGCGCAGGGGGTTCGCGGTGGTGCAGCGGTCGC
GGGACCCCTACGCCGACTTCCGGGCGTCGATGGTGGAGATGGTGGTGAGCCGGCAGATGTTCGGCGCGGTGGAGCTGGAG
CGGCTGCTGCGGTCGTACCTCTCGCTCAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGT
CGTCCTCCACGGCGGCTAGCCAGCGATCTCACTGGCTATCCACTCACTCACTCACTCAGTTATTAATCCAGCCCCAGGAC
GTTTCCTTAACTACCAGTAGGACTCTATCATAAGTAATCATGCTCTGCGTTCATGATTAGCTCCAACGATGTTCATCAGT
TTGATC----TTAGTTTTAATCTTGGCTGTAACTGGCCGTGCGGTTCTGCTGTAATGTACTCCTAGTACTAGTAGTACTA
CTGTTCTTGGCTCTGACCCAGTGTGCAAAAGCTAGCTTCTGATTTGGAATTGGATTCAGATTTGGCCAGAGGGCGCCGTG
GGTTTTGTTTGCTAGCTAGAGGAGCTGTACGATGTTTGATTTTGGGCGTCAATGATTTGAAAATCATGATGACACAGCAG
AACTTTGGGTTTGCGCTTCCCCTGCCATACCACCACTACACTGTTTTACCCTTTGTGTCGGCAATTATTGTATTATGCT-
--CGGATGCTCGCCATGTCGACTTTA-------------------------------AAGACAAACAAATAATCGTTCAT
CGGTGCCCAGTAGATTATATTTGTGCGATTCATGTGGAAGTACGTATCATGTAGACTTAACCTTTTTCAAAGAATCAAGA
ATAACATGGTTAAACAATGAGTAACATTTCGCCAATAGAAAAAAACAACAACAATGTCTATTCACATAATAAGAAGTATA
ATTCCTCTAAGTTTCTGAACTTGGGCCCAATATCCATTTTTCTACCCGAGCTTATCTGATCTCGATGAACAGTTAATAAA
TACTAGAAAAGTAAAAAAAAACTGATTTTTTTAGGAAGATGTTTAGCTGCATGAGGTATGTTTCAATTTTCAGCGTGTTT
GGACATTTGAGTAGCTCCCAGCAAAAAAAACTCGGTTCGAATATTGCACAAACAATAAACTTTTTCGCAGACCCTCAATT
TTTTTCTGATAGCTAATCAGATGTCCAGACATGATGAAAATTGGTATGAACATCACACACTCAAACATCTCTCATGTCAA
TCTGAACTTTTTCTAGT
>chr3D_1
GGATGCATTGCATGTAGCACGCGGGATCACGGAAAAGTGGTGGCAATAACACATGAGTGACTTCGTTGGTGTTGCTACTC
GAGCACCCAGTCTCAAGTTCTGAAGCGAAAGGCTAGGTTAAACCCGAGTGGTTATACCTGACAATGGCGATATTCTTTTT
CTTACGCCGTTACCTTATTGAAGACATTGCTCGGATATATCCGAACAGATTCTCAAAGGTGAAAACCTACATTTTGGTCT
TGTTACTGGATCTGGTGATGGTGACACTTGAGTGTCG---CGCCCTTCATAAAGGCGTTGCCATTGAAGAACCTTGTCGT
CCATGTGGTGTCATGAGATGGTTGGTG-GGATATGGTCATTACTCTAGTTTGTCGATCCCAGATCTAGTCACTTTGGGGC
TTCTTTTTA--TCCTCATCTACACATGGCTTTGCTTTGATACGACTTTGCTAGTTGTTGATGTGTTTTCGCGTGTGTGTA
AGTTGATGTTGCCTGTGTGCATGCTAAGTATGCAGACGTCGGATGTGTGCTCATTGTATTATGTATCTTCTTGATACCCC
ATTTGAGTC---TATAA--TCCACTCTTCGTCGAAAAAAAACAGGCCAGTAATTCGTTCG-------GTATATCATATCT
GGAATGCCGGATGATCACTCAGTGATACTAAAATGAGTTAAATACACCACAGGTGCCTTAACTTGTCATGTGCGGTCAGT
TTGATGCCTATAGTTGTAAAATACACGAAAGTGGTGCTCTAACTTGTCCGGCCATACAAATACGGTGCCTCCTACCATAT
TCGGTTGTGCACCTTGCCTGCATGGCGCGGCAGCGGCGGCCGCGGCCCACAAGCCTGGAAGTGGAGTGATTTTCTTTTTT
TGCAGGGATGGAAATTCGAACACGGGACACCCTGCTTAATGCAATAACGTGTTGGCCACCCGGCCAAACTAAGTTATACG
TTGTATTATTAGCTTCTTTTTGAGAAACCGTTATAGTATTAGCTAAAAATGTATATAGACCAATTCGGCGTATCCATCTG
CAATTCCTGAACATATTTTCTACATGTTTTTTCTCAAGTTCCTGTTTAGTTTTCATGATATGTAAATTTTACACAATAAC
ATTTTTAATACATGTTGAACATTTTTTTAATACATGTTGTCAATTTTTTGAATGCATGACAAACATCTTTCAAAACTAAG
GTTACAATTTTATAATACACATGAAACATTTTTCAAAACATTTTTTTTCAAATGCACTAGCATATTCCCTAAATCTCCCT
CAATACTAAAGCATTTTTTTTAGAAAAGGAGGAGGACCCTGGCCTCTGCATCTTAGTATCTCATTAAGGCGTCAAATGGT
GTCTTGTCTGTTGGTTAGCACACACGCGCGTTGGTAGCACCAAGAGGGCCCTGGGTGAACAATATAACCATGAGGCAGGA
CACCACGTGATGCCTAAATGGAGAAATAATGTTTACATGGAGACAATTAAATCAGCAGGAAAATTCCAACTAGATGGTCT
AATTAAACATAAAATCTTGCTTGATTTACCGGCTAGATTGCAAGGGTGGCACACCTGAGCTCGTGGGTTCGAAACTTCGG
ATCCCTTTTCCTTTCTTATTTCTCTTTATTATTTCACACGGTATTATTATTACAAATTGCGTTATATCTGTGATTTGCAT
ATACACCCATGCTTGGTGTAGCTGATATGCGGGACCCAAACCTGACAGGTTGAACCCATCAGTCTGCATCCGTATGTGAT
ACAATTATGTGTAATTAAATAATTAAATAAAATGTGAGGGGATTCTCGCTGTAAAAAAATGCTCCCGGCCACTAACATGC
GGTCCGCCACCATACTGGCTCGCCACGTGGGTATGGCCTATGACGGGATATGGTAATAGACATTGTATTTGCACACTTGG
ACAAGTTAAAACATCATTTTCGTGTATTTTACAACTTTAGGCACTAAACTGATCGCACAAGATAAATTAAGACCGTGATG
TATTTAACTCTAGTAAACTCTGTTTCAGAGTCAGTC-ATAACGAAAATCTTGCATGATTTGCTCAGTGCTTCAGTGTCAG
TAAGTGATTCCATAACCGAAAGCTTACATACATGCCAAAACATTCGTCGGCTTTATTATCCTTGCATAAACAAGAAAAAT
GC-ATGCCTTGATTAATAATTCGTCACGTGACCCACTTTGTACGCACGGCTCGTAGTGCACGTAGCGTACTGGCAGCTCA
CACTAGCCATTTCAAACCTTCCTTCGCTCCCGGCTCGTTCTCCCACGGCTAT-------ATATAACGCCGATGGCTCGGC
ACCAGTGCTCCCCTGCTTCCACAACCAACCAGTCCGGCGTCAAGTGAGCACTGACTGAGCTACCCATGGATCATG-----
-------GCGGCGGCGGCAGGAGTAGCAGCCGCCTCCGGGACCGGCTGGCCCGGATGTTCCGTCCGGGCTCGCTGCTCCG
CTCGACCTGCAACAACAACACCGCGTCGACCTCCTCTTCCTCCTCGTGCTCGGCCGCGGCGGGCGCGGCAGCCGACGGGG
TGACTGCGTCCAAGCCGCCCCCGAGCTCCGCCTGCTCCTCCAGCCGCGCGCTCTTGCCCGCCGACTCCGCCATCTCCCGC
GACAGGGACTCGTTCCTCACCTCTTCTCGCCGCGACTACGCCACCATCGTCGGCCGCACCGAGTCCTTCTCCAACGCCCT
CGACCGCGTGCACCGCCGTGCCGGCGCCGCGGTGCATTCTCTGCCGCCTCCGGCTCGCTTCTCCATGCACGCGTCGCCTC
TGATGGAGAGCAAGAAAAAGAGCCCTCTCCACG---GTCATCGGCACCACCGCCACCGCCTCGGTGGCCGGGTCAAGGGC
GACAAGAGCAAGAAGATGTTCTCCAACAACCCCTATGGCTTCAGCACCTCGGACACTGACGGCGACGACGTCTTCAGCAG
CGACGCTGACGAGCGCAGCCGCAGCGACGCCAAGAAGGGGGACGCGGAGGCCTTCTTCTCCTCCTCCAGAAGCTTCTCCT
TCTCCTCCGACTCCTCCGAGTTCTACAGCAAGAAGAAGAAACCAAAGAAGAAGTCCCCTGCCGCAGTGGCGCCCAAGCCG
CCGCCGCCGCCGC---CGAGAGCGAGGGCGAGGGGGCAGAGGCGCAAGAATCGCGTGGCGAGCAGCTGCGACACGTGCGG
CGTGAGGGAAGGGTTCCGGCCGGTGGTGTCGGCGGCGGAGGAGCAGGTGCGCAGGGGGTTCGCGGTGGTGCAGCGGTCGC
GGGACCCCTACGCCGACTTCCGGGCGTCGATGGTGGAGATGGTGGTGAGCCGGCAGATGTTCGGCGCGGCGGAGCTGGAG
CGGCTGCTGCGGTCGTACCTCTCGCTCAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGT
CGTCCTCCACGGCGGCTAGCTAGCGATCTCACTGGCTATCCACTCACTCACTCA----GTTATTAATCCAGCCCCAGGAC
GTTTCCTTAACTACCAGTAGGACTCTGTCATAATTAATCATGCTCTGCGTTCATGATTAGCTCCAACGATGTTCATCAGT
TTGGTC----TTAGTTTTAATCTTGGCTGTAACTGGCCGTGCGGTTCTGCTGTAATGTACTCCTAG---TAGTAGTACTA
CTGTTCTTGGCTCTGACCCAGTGTGCAAAAGCTAGCTTCTGATTTGGAATTGGATTCAGATTTGGCCAGAGAGCGCCGTG
GGTTTTGTTTGCTAGCTAGAGGAGCTGTACGATGTTTGATTTTGGGCGTCAATGATTTGAAAATCATGATGACACAGCAG
AACTTTGGGTTTGCGCTTCCTCTGCCATGCCACCACTGCACTATTTAATCCTTTGTGTCGGCAAGTATCGTATTTTGCT-
--CGGATGCTCGCCATGTCGAATTTA-------------------------------AAGATGAACAAATAATCGTTCAT
CGGTGCCTAGTAGATTATATTTGTGCGATTCATGTGGAAGTACGTATCATGTAGACTTAACCTTTTTGGAAGAATCAAGA
ATAACATGGTTAAACAATGAATAACATTTCACAAAT----AAAAAGAAGAACAATGTCTATTCACATAAGAAGTATAATT
--------------------------------------------------------------------------------
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-----------------
>chr3B_1
GGATGCATCACATGTAGCAGACGGGATCGCGAAAAAGTGGTGGCAACAACACATGAGTGACTTTGTTGGTGTTGCTACTC
GAGCCCCTGGTCTCGAGATCTGGAGCGAAAGCCTACGTCAGACCCGAGTGGTTATATCTGGCAATGCCGATATTATTTTT
ACGTTGTG----CCTTATTGAAGACATTGCTCGTATATACTCGGATCGGTTCTCCAAGGTGAAAACCTAGATTTTGGCCT
TGTGGTTTGATCCGGCGATGGCGACACTTCAATGTCG---CCCCCTTCATGAAGGCATTGTTGTTGAAGAACCTTGCCGT
CCATGCGGTGTCATGAGATGGTTGGTG-GGATATTGTCATTACTCTAGTTTGTCGATGC---------------------
--------TTTTCCTCGTCTACGCATGAC-TTGGCCTTGTATGTCTTTCCTAGTTGCCGACGTGTTTTCGTGTGT-----
--------------------------AGTATGCAGAGGTTGGACGTGTGCTCATTGTAT-------CTTCTTGATACTTC
GTTTGAGTC---TATAAAATTCACTCTTTGTA-AAAAAAAACAGGCCAGTAATTCGTTCGTTCCACCGTATGTCATATCT
GGAATGCTGGATGATCGCTCAGTGATAC----------------------------------------------------
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-------------GAAAATATGTTTCCGCGTCACTCCATAACGGAAATCTTGCATGATTTGCTCAGTGCTTCAGTGTC--
--AGTGATTCCATAACCGAAAGCTTACATACATGCCAAAACATTCGTCGGCTTTATTATCCTTGCATAAACAAGAAAAAT
GTTATGCCTTGATTAATAATTCGTCACGTGACCCACTTTATACGCACGGCTCGTAGTGCACGTAGCGTACTGGCAGCTCA
CACTAGCCATTTCAAACCTTCCTTCGCTCCCGGCTCCATCTCCCACGCCTAT-------ATATAACGCCGATGGCTCGGC
ACCAGTGTTCCCCTGCTTCAACAACCAACCAGTCCGGCGTCAAGTGAGCACTGACTGAGCTACCCATGGATCATGGTGGC
GGAGGTGGCGGTGGCGGCAGGAGTAGCAGCCGCCTCAGGGACCGGCTCGCCCGGATGTTCCGTCCGGGCTCGCTGCTCCG
CTCGACCTGCAACAACAACACCGCATCGACCTCCTCTTCCTCCTCGTGCTCCGCCGCGGTGGGCGCGGCAGCCGACGGGG
TGACTGCGTCCAAGCCGCCCCCGAGCTCCGCCTGCTCCTCCAGCCGCGCGCTCTTGGCCGCCGACTCCGCCATCTCCCGC
GACAGGGACTCGTTCCTCACCTCTTCTCGCCGCGACTACGCCACTGTCGTCGGCCGCACCGAGTCCTTCTCCAACGCACT
CGACCGCGTGCACCGCCGTGCCGGCGCCGCGGTGCAATCTCTGCCACCTCCGGCTCGCTTCTCTATGCACGCGTCGCCTC
TGATGGAGAGCAAGAAAAAGAGCCCTCTCCACG---GTCATGGGCACCACCGCCACCGCCTCGGTGGCCGGGTCAAGGGC
GACAGGAGCAAGAAGCTGCTCTCCAACAACCCCTATGGCTTCAGCACCTCGGACACTGACGGCGACGACGTTTTCAGCAG
CGACGCTGACGAGCGCGACCGCAGCGACGCCAAGAAGGGGGACGCGGAGGCCTTCTTCTCCTCCTCCAGAAGCTTCTCCT
TCTCCTCCGACTCCTCCGAGTTCTACAGCAAGAAGAAGAAACTAAAGAAGAAGTCACCTGCGGCAGTGGCGCCGAAGCC-
--GCCGCCGCCGC---CGAGAGCGAGGGCGAGGGGGCAGAGGCGCAAGAATCGCGTGGCGAGCAGCTGCGACACGTGCGG
CGTGAAGGAAGGGTTCCGGCCGGTGGTGTCGGCGGCGGAGGAGCAGGTGCGCAGGGGGTTCGCGGTGGTGCAGCGGTCGC
GGGACCCCTACGCCGACTTCCGGGCGTCGATGGTGGATATGGTCGTGAGCCGGCAGATGTTCGGCGCGGCGGAGCTGGAG
CGGCTGCTGCGGTCGTACCTCTCGCTCAACGCGCCGCGCCACCACCCGGTCATCCTCCAGGCCTTCTCGGACATCTGGGT
CATCCTCCACGGCGGCTAGCTAGCGATCTCACTGGCTATCCACTCACTCACTCA----GTTATTAATCCAGCCTCAGGAT
GTTTCTTTAACTACTAGGA-----CTATCATAAGTAATCATGCTCTGTGTTCATGATTAGCTCCAACGATGTTCATCAGT
TTGATCTTAATTAGTTTTAATATTGGCTGTAACTGGCCGTGCGGTTCTGCTGTAATGTACTCCTAG---AAGTAGTACTA
CTGTTCTTGGCTCTGACCCAGTGTGCAAAAGCTAGCTTCTGATTTGGAATCGGATTCAGATTTGGCCAGAGAGCGCCGTG
GGTTTTGTTTGCTAGCTAGAGGAGCTGTACGATGTTTGATTTTGGGCGTCAATGATTTGAAAATCATGATGACACAGCAG
AACTTTGGGTTTGCGCTTCCCCTGCCATGCCACCACTGCACTATTTTACCCTTTGTGTCGGCAAGTATTGTACTATCATA
CCCGGATGCTCGCCATGTCGATTTTAAAAATGAACAAATAATCTTTTGTTTTAGGGAAAGATGAACAAATAATCATTCAT
CGGTGCCTAGTAGATTAAATTTGTGTGATTCATGTGGAAGTACGTATCATGTAGACTT----------------------
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-----------------
>chr3B_6
-----CATCGCATGTAGCTGCTGGGATCGCGGAAAAGTGGCGGCGACAACACATGAGCGACTTCGATGATGGTGCTACTC
GAGCACCCAGTCTTGAGCTCCAGGGCGAAAGCCTAGGTCAGACCCGAGTGGTTATACCTGGCAACGGCGACG-----TTT
TTTACGTCGTTACCTTGTTGAAGGCGTTGCTTGGATAGACTCGGACTGATTCTTCATGGTGAAAACCTAGATTTTGGCCT
TGTGGTTGGATCCGGTGACGGCGGCGCCTGAGTGTCG---CTCCCTTCCTGAAGGCGTTGCTGTTGAAGAACCTCGTTGT
CCATGTGGTGTCAAGAGATTATTGGTGCGGATATGGTCATGATTGTAGTTTGCCCATCACAAGTCTGATCACTTTGGGT-
---TTTTTT--TTCTCGCCTTCACATAGCTTTGGTCTTGTATGACTTTGCTTGTTGTCGGTGTTTTTTCGTGTGTGTGTG
AGCTGGTGTAGGCTGTGTGCATCCTAGCTATGCAGAGGCCGGGTGTGTGCTCATTGTGTTATGTATCTTCTTGATGCTCC
ATTTTGAGCTAATAAAA--TCCACTCTTTGTCGAAAAAAA----------------------------------------
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-----------------
>chr5A_11
----------CATGTAGCTGCTAGGATCGCGGAAAAGTGGCGGCGACAACACATGAGTGATTTCGATGGTGGTGTTACTC
AAGCACCTGGTCTCGAGCTTCGGGGCGAAAGCCTAGGTCAGACCCGAGTGGTTATACCTGGCAATGGTGATGT--TTTTT
CTTACGTCGCTACCTTGTTGAAGGCATTGCTCGAATATGATCAGACTGATTCTTCAGGGTGAAAACCTAGATTCTGACCT
TGCGGTAGGATCCGGTGACTGTGACCCTTGATTATTGCTCCTCCCTTCCTGAAGGCGTTGTTGTTGAAGAATCTCATCGT
CCATGTGGTGTAATGAAATTGTTGGTGCGGATATGGTCATTGTCGTAGTTTGCCGATCACAAATATGATCACTTTGAGG-
---TCTTTTTTTCCTTGCCTACACATAGCTTTGGTCTTATATGACTTTGCTAGTTGCCGGCATTTTTCT-CGCGTGTGTG
AGATGGTGTTGGCTGTGTGCATCCTAGCTGTGCAGAGGCCGGGTGTGTGCTCATGGTGTTATGTATCTTCTTGATGCTCC
ATTTTGAGTCAATAAAA--TCCACCCTTTGTCGAAAAAAA----------------------------------------
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>SNPs
----------------------------------------------------------------S----S----------
--S--------------------------------S---------------------------------------S----
------------S-------------------S-----------------------------------------------
----------------S---S---------------------------------------S--S----S-----------
--------------------------S---S----------------------------S--------------------
-------------------------S----------S--------------S------S------------------S--
-------S-----------------------SS-S-S---------S------------------SS-------------
--------------S----------S------SS----S-----S---------------SS------------------
---------------S---------S------------------------------------------------------
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------------------------------------------------------------------------S-------
--------------------S-----------------------------------------------------------
--------------------------------S--------------------------------S--------------
-S--------------------------------------------------SSSSSSS-------S-------------
---------------------------------------------------S------------S-----S-----S--S
--------------------------------------------S-----------------------------------
------------------------------------S--------S----------------------------------
----S-------------------------S-------------------------------------------------
-----------------S--------------------------------S-----------------------------
------------------S-------------------------------------------------------------
---------------------------------SSS--------------------------------------------
--------------------------------------------------------S-----------------------
--------------S------------------------------------S----------------------------
--------------------------------------------------------------------------------
-------------SSS-------------S--------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
--------------------S---------------------------------SSSS----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSS-----------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----------------------------S--------S----S---------------------S---------------
---------------------S---------------------------------------SS-----------------
-------S-----------------------------------------------------------SS-----------
--------------------S---------S-S---SSSS-----S--S--------------------S---S-SS--S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_459
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---------------------------------------TACGACTTTGCTGGTTGCCA---------------------
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>reverse_2658
--------------------------------------------------------------------------------
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-----------------TACCTCTTCTCGCCGCGA---------------------------------------------
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>forward_2391
--------------------------------------------------------------------------------
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---------------------------------------------------CGACTGAGCTACCGATGGAC---------
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>reverse_4171
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----------GTTTCTGAACTTGGGCCCAA--------------------------------------------------
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-----------------
