>input_sequence_61835
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---------ATGGCTCTAGTGGGTCAGCCAGCCACGTTTTGCTACGACGGCTTCGTCGGTGACGGTGTGCCGGCATTCAT
GGACGCCGGCGGCGTCCTCGGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTG
GCCACGCCCACGCATGGGAGCT---GCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGTGTCAACGCGTTCGGGAGC
CACGACCTCGGCTGGACCAGCCCAGCCGGCCGCATGTCCT---------CCTCCTCTTCGGTGCTCACCTTCGACAGCCC
GGGCGAGGACAAGTGCGCTGCTGCCGCGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCA-------
--ACCGCGCCGGCGGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGTCCCCCGGCGGCCTCCCCTTCGCACAAGCGG
CCTCGTGCGCGCGCGCAGGCACAGCAGGGAACGGAGCAAGAAAGCACTACTCTTCCCAAGAAGCAGTGCGGCGGCGACAG
GAAATCAGCAGTCAAGCCTATCAAAACGTCCGCGGCCACCACTTCAGCCAAAGACCCTCAAAGCGATGCTGCCAAGGTAC
GCTCATGGAGTTTCGTCCCGAACCATCGCAATTAAGGGAG--CTCAACCTCAATTCTCAGTGAACTGACAAGGTTTACTG
AATTACTGTGGACTACAGACTCGTCGTGAGCGGATCGGGGAGCGTCTGAGAGTTCTGCAGGAGCTGGTGCCCAACGGCAA
CAAGGTGGACATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACATACAT
TAATCGGTTTAGCAATGTGAATCCGGCGTCTTCGGCCTCGTTTCTTAGCCGGCACTTGTCTGATCCTAGTAGCTAACAAG
CAAATGATGTCAGGTGCTCGAGACGGACGCATTCTGGCCTGCGCAGGGCGGCGAGGCGCCGGAGATCTCCCAGGTGAAGG
CGGCACTCGACGCCATCATCCTCTCGTCGTCGCAGCAGCCTCGTCAGTGGAGCTAA------------------------
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>chr7D_1_TraesCS7D01G230600
CCAGGCGGCGATTTTTATGCCTCCTGGGAAGGGGCCAACGGCTGGAGATGCTCTAAGCATCCGAGCTAGCGTGAAGCTCC
GGCCCAAATGAAGAAGATG---TTTTCTGTGTATGCAAAATTAATTATAAGTATAGAAAATTCGCATCACTTGCACTGGA
AAATTCGTCAAACCAAACTTCATCGTTTGGATCTCAAGTCTTCCAGTTTCTTTTCAATAAGGCCCTGTTTGGAGTGCAGG
AATTCAAAATGCTGGGGTAGAAAAACAAATGAATTGAGATGTCATGTATCCTGAATTCCGATTTGAACTAGCCACAAAAA
ACTGCATAACTGTCGTTTGGAAATCACGCTAAAAAA-CACTGAAAACATGGACACAATGAGAAGAAAACATAAGGTTAAA
CCTCATGTTTGATTTCCTCCAAAATTCTTATGAGATA-CCTTCATAGGAATTTCAATGGAATATAGGATGGCAATTCCTT
TGTTTCAAACAGGGCCTAAAAAAAGAAGAAGAAAACAAGGATTCGCAAGCCAATTCTTTCCAAAAACCATTTGGTGTGTC
ACCATC-------------CCGCCGATCTTTGCTCCGAAGTCCTGAACCAGCTCGCGCGTCCATTTGTTGTTCTTTGCAG
ATGGAGTAGACTTGAGCAAGGATGCGCAATTATACGTGAATCTGGA------------TCGATCATACGGAGGGGAGTGC
CAGTATCTCCCTAGCGACCCTAAGCAATTGAGGGCATTAAATGCAATTGCATTTCTATAATCCGGCCATGCTAATGCCTC
CATGGCATGCGCTTGTTTAATCGCCGTCTTCCCCAGTGGCCATGTGGGCGTCGTCGCAGAGCAGCGCTATATAAGGCTGT
GCCCAAGAGTACCTTACCAAATCACAGAAGCCTAGTTCCTCCCCTGTTCTCGTGTGCTAGCATACAGAGACATTACATAC
AC----ACGTGTCGCTGTTTGATACACCAACACTTACGTAGAGTAGCTCGCTTACTTTGCTCA---------------TT
GCCGCCGCCATGGCTCTAGTGGGTCAGCCAGCCACGTTTTGCTACGACGGCTTCGTCGGTGACGGTGTGCCGGCATTCAT
GGACGCCGGCGGCGTCCTCGGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTG
GCCACGCCCACGCATGGGAGCT---GCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGTGTCAACGCGTTCGGGAGC
CACGACCTCGGCTGGACCAGCCCAGCCGGCCGCATGTCCT---------CCTCCTCTTCGGTGCTCACCTTCGACAGCCC
GGGCGAGGACAAGTGCGCTGCTGCCGCGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCA-------
--ACCGCGCCGGCGGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGTCCCCCGGCGGCCTCCCCTTCGCACAAGCGG
CCTCGTGCGCGCGCGCAGGCACAGCAGGGAACGGAGCAAGAAAGCACTACTCTTCCCAAGAAGCAGTGCGGCGGCGACAG
GAAATCAGCAGTCAAGCCTATCAAAACGTCCGCGGCCACCACTTCAGCCAAAGACCCTCAAAGCGATGCTGCCAAGGTAC
GCTCATGGAGTTTCGTCCCGAACCATCGCAATTAAGGGAG--CTCAACCTCAATTCTCAGTGAACTGACAAGGTTTACTG
AATTACTGTGGACTACAGACTCGTCGTGAGCGGATCGGGGAGCGTCTGAGAGTTCTGCAGGAGCTGGTGCCCAACGGCAA
CAAGGTGGACATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACATACAT
TAATCGGTTTAGCAATGTGAATCCGGCGTCTTCGGCCTCGTTTCTTAGCCGGCACTTGTCTGATCCTAGTAGCTAACAAG
CAAATGATGTCAGGTGCTCGAGACGGACGCATTCTGGCCTGCGCAGGGCGGCGAGGCGCCGGAGATCTCCCAGGTGAAGG
CGGCACTCGACGCCATCATCCTCTCGTCGTCGCAGCAGCCTCGTCAGTGGAGCTAACAGCGAACCGATACATCAGCACTA
CACATATACATCCTCCCAGAATTCACAGAGTTACTCTCTGCTCTATCCTCTTTCTATGTTGCTGTCCCATTCCCTAATCT
TCTCATCTTTGCTA-----TGTACTCACCGTAGTAGCCACAGTAAACTCTACTAATTGGTTAATGATGGCGTGCACTCGA
TCGACGATGTAATATAAACATTGTGCTCAGCACTTCATCGTCACTAGTTTCTTTT--AAAAAAAGGAGAAAATCCCGCCT
CTGCATCATAAGATGGACACAGCCATTTTATTAAACGTGAACCAAATCCAAGTCTCTAAATACCAAAAGAAACAAAACAA
AACAAAACAAGGCCACAACAATTAGAAACTTCCACATAATCTACTACTGTCATGCTAGCCAAACTGGTTGAACAAGTCCC
ATGCAATCATTTTCAGATGGCTGCATCCAAAAGTCATAAGTGTCCACACGTTGCGATGACCACATACGAAATAATTTTGT
AGCTCTAAAGATAACCCGCAAAAAATTGAAATAGATGATTTGTTAAAAACACACTCATTTTGACAATCTCAAACTGCCCA
AAGAATGGCACAAACTCCCATGCAGAATTGACCCTTAGATTATGGTGAATAACATCAAACATGTGGTCCGAA--------
GGTTAGGAGGAGAGTGGTATCCCCATCCCACGAGGGTTCGAGTCCTAGTCTTGACACCGGTGCTCGCATTTTTCTGGATT
TATTTCGGGCCTTTTGGCGATGTGCGTTCGATGTAAGGGTATGTTCCCGTTGACTATGAATGCATCTATGACGACTTTGT
CAATCTCAAAAGGATGTTGCGGCTCAAGTCTTTCGGGGTACTAGGGGGGGTGC----------GCGTTCATAGGGGTGAG
TGTGTGTGCATATGTATGAGCGTATGCGTGTGTACTATGTTAAGAAAAAAACACTTCTACTTCGGTACAACCAGATCTGT
CCATACCTTTCTGAGTCTGCCTTGGACCGGCCCAAAAATAA
>chr7B_63
--------------------------------------------------------------GAGCTAACGTGAAGCTCC
GACCCAAATCAAGAAGATGATGTTGTCCGTGTATGCAAAATGAATTAAAAGTATAGAAAATTTGCGTCACTTGCATGGGA
GAATTCGTCAATCCAAACTTCATCGTCTGGATTTCAAGTCT-----------TTCAATAAGGTCCCGTTTGGAGCATAGG
AATTCAAAATGCTGGGATAGGACAC---ATGAATTGAGATGTCATGTATCCTGAATTCCTATTTGAACTAGCCACG-AAA
ACTGCATAACTGTCGTTTGGAAATCATGCTGAAAAAACACAGAAAACCTGGACATGATGAGAAGAAAACATAAGGTTAAA
CCTCATGTTTGATTTCCTCCAAAATTCCGATGAGATAGCCTTCATAGGAATTTCAAATGG-TATAGGATAGCAATTCCTT
TGTTTCAAACTGGGCCTAAAAAGGGAAGAAAAAGGCGAGGATTCGCAAGCCAATTCTTTTCGAAAAGCATTTGTTGTGAT
GCTCGAATTGGTCATCATACCGCCGATCTTTGCTCCGAAGTCCTGAACCAGCTAGCGCGTGCATCTGGGAAAGCTG----
------------------------------TATATGTGAATCTGGGAATGCTGGATCGTCGATCATACGGAGAGCAATGC
CAGAATCTCATAACG----------AATTGCGGACATTAAATGCAAGTGCATTTCTATAATCCGGCCATGCTAATGCCTC
CATGGCAGGCGCTTGTTTAATCGCCGTCTGCCCCAGTGGCCATGTGGGTGTCGTCGCAGAGCTCCGCTATATAAGCTTGT
GCCCAGGAATACCTTGCCAAATCACAGAAGCTTAGTTCCTCTCCTATTCTCGTGTG---------------------TAC
TC----ACGTGTCGCTGCATGATACACTAGCACT-----AGAGTAACTTGCTTACTTTGCTCTTGTTCGTCATCGTCGTT
GCCGCCGCCATGGCTCTAGTGGGTCAGCCAGCCACGTTCTGCTACGATGGCTTCGTCGGTGACGGTGTGCCCGCGTTCAT
GGACGCCGGTGGCG---TCGGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTA
GCCACGCCCACGGATGGGAGTTGCCGCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGCGTCAACGCGTTCGGGGGC
CACGACGTCGGCTGGACGAACCCAGCTGGCCGCCTGTCGTCTTCTTCGGCCTCCTCCTCGGTGCTCACCTTCGACAACCA
GGGTGAGGACAACTACCCCGCTGCCACGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCAGCTGCGG
CAACCGCGCTGGCAGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGCCGCACGGCGGCGTCCCCTTCGCACAAGCGG
CCTCGTGCGCACGCGGAGGCACAGCAGGGCACGGAGCAAGAAAGCACTACCCTTCCCAAGAAGCAGTGCGGCGGCGATAG
GAAATCAGCAGTCAAGCCTAGCAAAACGTCCGCGCCCACCAGTTCGGCCAAGGACCCTCAAAGCGATGCAGCCAAGGTAC
GCTCATGGAGTTTCGTCCCGAACCATCGCAATTAAGGGAG--CTCAACCTCAATTCTCGGTGAACTGACAAGGTTTACTG
AATTACTGTGGGCTACAGACTCGTCGTGAGCGGATCGGGGAGCGTCTGAGAGTCCTGCAGGAGCTGGTGCCCAACGGCAA
CAAGGTGGACATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACAGACAT
TAATCGGTTCAGCAATGTCAATTCGGCGTTTTCGGCCTCGTTTCTTAGCCGGCACTTGTCTAATTGTAG---CTAACAAA
CAAATGATGTCAGGTGCTCGAGACGGACGCATTCTGGCCTGCTCAGGGAGGCGAGGCGCCGGAGATCTCCCAGGTGAAGG
CGGCACTCGACGCCATCATCCTCTCGTCGTCGCAGCAGCTTCGTCAGTGGAGCTAACAGCGAACCGATACATCACCACTA
--CATATACATTCTCCCAGAATTCAGAGAGTCGCTCTCTGCTCTATCCTCTTTCTATGTTGCTGTCCCATTCCCTAATCT
TCTCATC-TTGCTATGTACTGTACTCACCATAGTAGCCACAGTAAGCTCTACTAATTGGTTAATGACGGCGTGCACTCGA
TCA----------ATAAACGTTGTGCTCAGTACTTCATCGTTACTAGTTTCTTTCAAAAAAAAAGGAGAAAATCCCGCCT
CTGCACTATAAGATGGACACAGCCA---------ACGTGAACCAAATCCAAGTCTCTAAACACCAAAAGAAACAAAACAA
AACAAAACAAGGCCACAACAATTAGAAACATCCACATAATCTACTACTGTCATGCTAGCCAGACTGGTCGAACAAATCCC
ATGCAATCATTTTCAGATGGCTGCATCCAAAGATCATAAGTGTCCACACGCTGCGTATGAC-------------------
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>chr7A_669
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----------------------------------------------------------TCGATCATACGGAGGGGACTGC
CAGTATCTCCCTAGCGACCCTAAGCAATCGAGGGCATTAAATGCAACTGCATTTCTATAATCCGGCCATGCTAATGCCTC
CATGGCATGCGCTTGTTTAATCGCCGTCCTCCCCGGTGGCCATGTGGGCGTCGTCGCAGAGCAGCGCTATATAAGGCTGT
GCCCAAGAATACCTCGCCAAATCACAGAAGCTTAGTC-----------------------CATACAGAGACATTACATAC
ACACGTACGTGTCGCTGCTTGATACACTAACACTTACGTAGAGTAGCTCGCTTACTTTGCTCA---------------TT
GCCGCCGCCATGGCTCTAGTGGGTCAGCCAGCCACGTTCTGCTACGACGGCTTCATCGCTGACGGTGTGCCGGCGCTCAT
GGACGCCGGCGGCG---TCGGGTTCGGCTACGGGTACGATCACCACTCCCATCTCCTCGAGGAGGAATGCTTGCTCGGTG
GCCACGCCCACGCATGGGAATT---GCCGACCGGCAATCTTGGCGCCGAGGCGCCGGGCAGCGTCAACGCGTTCGGGGGC
CACGACCTCGGCTGGACCAGCCCAGCCGGCCGCATGTCCT---------CCTCCTCTTCGGTGCTCACCTTCGACAGCCC
GGGAGAGGACAACTGCGCCGCTGCCGCGTGGATGGACGCCGCGGACCAGCTGAGCTACAGCCCGTCAACGGCA-------
--ACCGCGCCGGCGGGAAGCTTCAGCTTCGAGGGCTGCGGCGGCAACGGCCGCACGGCGGCATCCCCTTCGCACAAGCGG
CCTCGAGCGCGCGCGCAGGCACAGCAGGGCTCGGAGCAAGAAAGCACCACTCTTCCCAAGAAACAGTGCGGCGGCGACAG
GAAATCGGCAACCAAGCCCACCAAAACGTCCGCGGCCACCAGTTCGGCCAAGGACACTCAGAGCGATGCAGCCAAGGTAC
GCTCATGGAGTTTCGTCCCGAACCATCGCAATTAAGGGAGAGCTCAACCTCAATTCTCAGTGAACTGACAAGGTTTACTG
AATCACTGTGGACTACAGACTCGTCGTGAGCGGATCGGGGAGCGGCTGAGAGTTCTGCAGGAGCTGGTGCCCAACGGCAG
CAAGGTGGACATGGTCACCATGCTCGACAAGGCCATCACTTACGTCAAGTTCATGCAGCTCCAGCTTACGGTACAGACAT
TAACCGGTTTAGCATTGTGAATTCGGCGTACTCGGTCTCGTTTCTTAGCCGGCACTTGTCTGATCCTAG---CTAACAAG
CAAATGATGTCAGGTGCTCGAGACGGACGCATTCTGGCCTGCTCAGGGCGGCGAGGCGCCGGAGATCTCCCAGGTGAAGG
CGGCACTCGACGCCATCATCCTCTCGTCGTCGCAGCAGCCTCGTCAGTGGAGCTAACAGCGAGCCGATACATCACCACTA
C----ATACATTCTCCCAGAATTCAGAGAGTTACTCTCTGCTCTATCCTCTTTCTATGTTGCTGTCCCATTCCCTAATCT
TCTCATC-TTGCTA-----TGTACTCACCATAGTAGCCACGGTAAACTCTACTAATTGATTAATGACGCCGTGTACTCGA
TCAACGATGTGATATAAACATTGTGCTCAGCACTTCATCGTCACTAGTTTCTTTAAAAGAAA---GAGAAAATCCCGCCT
CTGCATCATAAGATGGACACAGCCATTTTATTAAACGTGAACCAAATCCAAGTCTCTAAATACCAAAAGAAACA-----A
AACAAAACAAGGCCACAACAATTAGAAACTTCCACATAATCTACTACTGTCATGCTGGCCAAACTGGTTGAACAAGTCCC
ATGCAATCATTTTCAGATGGCTGCATCCAAAGGTCATAAGTGTCCACACGCTGCGATGACCACATATGGATTAATTTCGT
AGCCCTAAAGTTAAACCGCAAAAAAATGAAATAGATGGTTTGTTAAAAACACACTCATTTCGACAATCTCAAACTGCCCA
AAGAATGGCACAAACTCCCATGTGAATTTGACCCTTAGATTATGGTGCATAACATCAAACATGTGGTTCGATGGTTCGAT
GGTTAGGAGAACAGTGGCATTCCCATCCAACGAGGGTTCAAGTACTAGTCTTGACGCCGGTGCTCGCATTTTTCTGGATT
TATTCCGGGCCTTTTGGCGATGTGCGTTCGGTGGAAGGGCATGTTCCCGCTGACTACAAATGCGTTTATGGTGACTTCGT
CAATCTCAAAAAGATGGTGCGGCTC-AGTCTTTCGGGGTACTCATCGGGTGGGGGGGTAGGGGGCGTTCATAGGGATGAG
TGTGTGTGCATATGTATGAGCGTCTACGTCTGTACTATGTTAAGAAAA--------------------------------
-----------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----------
-S-------S--------------S--S-------------S-----S--------------S--S---------SS---
S----------S--------------S-----S--------SSSSSSSSSSS----------S--S--------SSS---
----------------S---S-S-SSSS-------------------------------S---------------SS---
--------------------------S---S---------S------S------SS------------------------
---------------------------SS---------------------------SS-SS--------S----------
----------S-----------SS------S--SS-S----------------------S-S----S------S----SS
S-SSSS-----------------------------------------------S------S---S--SSSSSSS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------S------------------------------S---
----------------------------------------------S---------------------------------
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--------S------S---------------S---------S---S----------SSSS--------------------
-----------------S---------S----------------------------------------------------
--------------------------------------S-----------------------------------S-----
--------------SSS---------------------------------------------------------------
--------------------S----------------------------------------S---------------S--
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---S--------S-----S-------------------------------------------------------------
-------------------------------------------------S-S-S-------S------------------
-----------------------------S--------------------------------------------------
--------------------S--------------------S---S-----S-----------------S----------
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---------------------------------------------------------------------------S----
----------------------S------S---------------------------------------SSS--------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------S-----
-S---------S-------------S------------------------------------------------------
-------S---------------------S------------------------------------S-------------
--S-------S-------------------------------------------S-------------------------
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-------------------------------S------------------S---------------S-S-S------S--
---S------S---S----------S-----------S----------------------S-------------------
----------------------SSS-S--------------------S-------------------S---S--------
---------S-S-----S--S-------S----------S---S-----------S------------------------
----S-------------------------S--S-----S---------S------SS-----S-S----SS-----S--
-----------S----S--------S----------------SSSS---SS-S----------------------S----
-----------------------S-S---S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_978
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------------------------------------------------------------------------------AC
ATACACACGTGTCGCTGT--------------------------------------------------------------
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>reverse_2844
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-------------------------------------------CCTAGTCTTGACACCGGTGC-----------------
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