>input_sequence_61755
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------------------------------------------------------ATGCCGGCAGTGATGAAAGCTCTCGC
CGCCGCCTCGCCGGTCTCGGCGCCGCCATCGCCCCGTCGGAGCGTCGCAGGTTTTGTTCTCTTCTCACTGAAGCTGCATT
TCCATTTCTGCGCTCTAGTCTCTAGACTTGTAGTGA----TGTATGAGCACCTGTTCATAAGTTTCTGAATCCAGTATGC
GTGCGT--------TATTCAAATTTCACTGCACGATGTCCTTCCTTTGGGAGAGTTCAGAATTGACTACATGCTTCTCTG
TTAAGGCTGCCACTTCGGTTGGAATAGCGTTGGTCATATCTCACTCGTTCGGGTCGTTCTCTGTTAGTCCAGATAGCGTT
TGTTTGGTTCAGGCATCAACACCAGCAACTATTTTCTTCCGAAGTACCAAGTTGATTCTTCCACATATTCAGGGTAGTCC
TTGTGAAGTTGTGATGTCCAAATCTATATTTTGCGTTACATATCACACTGCAAAATGCTGTTTCTGCTGCTGATGGAATC
ATTATGTCTAGTCTATTTCGTTATTAACAATCA------------------------------TGGCCTTAAGAGTTAAG
ATATGCTTCTGAACCTCACATTTCAGTACCTGACACGCTGCATTTACAGGCTCGTCAGGTCCCCCGTGCCAAAGCCTGCA
CTCCTCATTCCGCGGCATCTCCCTGCGGTGCCGTCCGAGGAAACCGGTCCACCGCTCGCCACCGCTACGCAGCTCCCGGG
CAGCAGCGCAGGTGGTGGCCATGAAGCCGGCGATCCAGTTCATCCAGGGCACGGACGAGCAGACGATCCCGGACGTGCGG
CTGACCAAGTCCCGCGACGGCACCAACGGGGTGGCCATCTTCGAGTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGA
GCTCGGGGACATCACGGGGTTCTACATGATCGACGAGGAGGGCATGCTGCAGACGGTGGACGTGAGCGCCAAGTTCGTCA
ACGGGAAGCCGGCGAGGGTGGAGGCCAAGTACGTCATGCGCACGGCCGGGGACTGGGACAGGTTCATGAGGTTCATGGAG
AGGTACTCGCAGGCCAACGGCCTCCAGTTCGTCAAGAACTAA--------------------------------------
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>chr3B_1_TraesCS3B01G392800
TCATTTGATTGTAGTTAGGATGAACTATCATTTGTTTAACTAGCTGACACTATGTTTAGATTGTGTGTGGTAAGGTCACC
ACTAGATAGAAGTGGTGACAACACCTTATGCAGGTTGCAACCAAACACCATGTCATATGTGCACCTAATGCAATGCGGGC
AATCAAACGCCGGGTCAAAAATGATTGTCTCATGCAACTAGGGGCATGCAGGCAACCAAACTATGTGCATCTGTTTTTTT
TTTTTGGCCTGCATCCCCTCAAACCGGCTCAATAGAGCCAGGCTCGCCGGGCCAGGCTGAATCGGCAATGTAACCAAACA
CGCCCCATATGTTTTTAACAGCTTGGATTGATGACTTGGTCGTCAAGATTCAGTGGCCATGCTCGCCGACATTCCA-ATT
GTTTAGGTGGTGTCCTCTTTGAAGACGATGATTGTGAGTATTACTCTTCTGGTC-----TAGCATTTGTGAGGTCGGTGT
GTTGGTTATGTGCATGTTCGATGTTTTGTCATATGTTGTTCAACATGCTGGGTACATTTATTTGTACCGTCCGAAAGCGT
TAATAAAATCAGCCATTATCATAAATCTAGAACAAAAATTCTAATAAAATGATAGATTGAATTATATTCAAATCAGAATT
TCAACTACCAAATCTGGTGAGACGTGACTTTTCTTTTTGACAGCACAACGGAATTCACACTTGAAAATTTCCACATCAAG
CACTAGCTAGCATACGTGGGCTTTTAAATGGAAAAATTCTCAAACGTAAATGGGTGGCTTGGAAGCGTCCACGGGCAAGG
CAGTGGACCAGCAGGCGCCAGAGGAATGGGTAGCTCTGTTTGGGACACGCAGCCACCCAAAAACTCCATTCACTCTCTTC
CCCGTCTGTACCACTCAAAACCTCACCTCTGCCTGTATTTCTATTTCCCCGTCCCCTCCTTCCTTCTAGACACCAATCCT
TCTTCCTCACC--------CAACTGCCCAACTTCCGGAGCAAGCGAATTGCATCATGCCGGCAGTGATGAAAGCTCTCGC
CGCCGCCTCGCCGGTCTCGGCGCCGCCATCGCCCCGTCGGAGCGTCGCAGGTTTTGTTCTCTTCTCACTGAAGCTGCATT
TCCATTTCTGCGCTCTAGTCTCTAGACTTGTAGTGA----TGTATGAGCACCTGTTCATAAGTTTCTGAATCCAGTATGC
GTGCGT--------TATTCAAATTTCACTGCACGATGTCCTTCCTTTGGGAGAGTTCAGAATTGACTACATGCTTCTCTG
TTAAGGCTGCCACTTCGGTTGGAATAGCGTTGGTCATATCTCACTCGTTCGGGTCGTTCTCTGTTAGTCCAGATAGCGTT
TGTTTGGTTCAGGCATCAACACCAGCAACTATTTTCTTCCGAAGTACCAAGTTGATTCTTCCACATATTCAGGGTAGTCC
TTGTGAAGTTGTGATGTCCAAATCTATATTTTGCGTTACATATCACACTGCAAAATGCTGTTTCTGCTGCTGATGGAATC
ATTATGTCTAGTCTATTTCGTTATTAACAATCA------------------------------TGGCCTTAAGAGTTAAG
ATATGCTTCTGAACCTCACATTTCAGTACCTGACACGCTGCATTTACAGGCTCGTCAGGTCCCCCGTGCCAAAGCCTGCA
CTCCTCATTCCGCGGCATCTCCCTGCGGTGCCGTCCGAGGAAACCGGTCCACCGCTCGCCACCGCTACGCAGCTCCCGGG
CAGCAGCGCAGGTGGTGGCCATGAAGCCGGCGATCCAGTTCATCCAGGGCACGGACGAGCAGACGATCCCGGACGTGCGG
CTGACCAAGTCCCGCGACGGCACCAACGGGGTGGCCATCTTCGAGTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGA
GCTCGGGGACATCACGGGGTTCTACATGATCGACGAGGAGGGCATGCTGCAGACGGTGGACGTGAGCGCCAAGTTCGTCA
ACGGGAAGCCGGCGAGGGTGGAGGCCAAGTACGTCATGCGCACGGCCGGGGACTGGGACAGGTTCATGAGGTTCATGGAG
AGGTACTCGCAGGCCAACGGCCTCCAGTTCGTCAAGAACTAAGTCGCCTCTCGTCGATGTGCCTTGTGTGTTGCCCATGT
TCAGTTCAGTATAACTGTCGAGCTGGTAACGAAGCTGAATGCTTGTACCGAGTTATTACGAGA-ATCTCTTATGTAACTT
TGACAATTGTGTGAGATTTTGTATGCACCAGCTGAAAGCACGTAATGAGGAAAACCGGTAGAAAACAAGCAT--------
-----------GTCCGGACGTTGTGCATGTTGTGTTAACCTTGTTGCACTGAACTAGTTTCAGACTTCAGTTTAGTTTTT
TCTGAATAATAGCCAGAAGTATCCTATG--TTCGTGCTGCGGCAGAATAGGCCGTAGCGTTTAATTCTCTGTAAGTTGCT
GGCCACGATTAGATTGTGGGATGGCGCGGGGTTCACGGATCGTGGGCAGCTAGTTTGTTATGCCGCTGAATAGAATGAAA
AAAAATGGAAAAGGACGCAAAGTGTGCGCGTCGCCAAAACACTGTCTCCT--------------------TTATGTGTTC
TTCAGAGTTCAGAGCTAATCCACCCTCACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGA
TTTGGGAGCTGCTCCAACATTTGGCATCAGAGCCGTGTTTCGGAGGCGATCCGGCAGCTGGAAAAGAGGAGGAGGTGCGG
CGGCGGTGATCGGCGATGGGAGACACATCGTCAAAGAGGGATCAGAACAACGGCGACAGCAGCAGTGGCGAAAATTACAC
GCCGCCAGCGAAGAGGCCCGGAGAAGAGGGCGTTGTGGTCGTGCAGCGAGTGCCACTGAGGACTGGTGGCGTCCCGATCC
AATATCCAATGCTCAACGATTCCAACTACGGTCTCTGGGCCATGAAGATGAGAGTGCTGCTCCGCCCACTCGGTGTCTGG
TCGGCGTTGGAGGGCACTGCGGAGTTCGACCAGGACAAGGACGATGAGGCGTTCTTCGCTCTCTCCCAGTCCGTCCCAGA
CGCGGTGATGATGGCAGTGGCCAACTATGAGACTGCCCATGAGG
>chr3A_325
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----CCATATATTTTTGGCAGCTTGGATTGATGACTGGGTCATCGAGATTCAGTGGTCGTACTGGCCGACATTCCATATT
GTTTAGGTGTTGTCCTCTCTGAAGACGACGATTGTGGGTATTACTTTTCTGGTCCCTTTTAGCATTTGTGAGGTCGGTGT
GTGGATTATG----TGTTCGATGTTTTGTCATGTGTTGTTCAACATGCCGGTTACACTTATTTGTACCAGCGAGACGCGT
TAATAAAATCACCCATTATCACAAATCCAGAGCAAAAATTCTAACAAAATGACATATTAAATCATATTCAAATCATAATT
TCAGCTA-CAAATCTGGTGAGATGTGACTTTTTTTTAC-----CACAACGGAATTTACACTTGAAA-TTTCCATC-----
------------TACGTGGTCCTTTAAGATGGAAAATTCTCAAACCTAAATGGATGGCCTAGAAGTGGCCACGGGCAAGG
CAGTGGACCAACAGGCGCCAGAGGAATGGGTAGCTCTGTTTGGGACACGCAGCCACCCAAACACTCCATTCACTCTCTTC
CTCGTGTGTACCACTCAAAACCTCACCTCCGCCTGTATTTCTACTTCCCCGTCCCCTCACTCCTTCTAGACACCAATCCT
TCTTCCTCACC--------CAACT--------TCCGGAGCAAGCGAATTGCATCATGCCCGCAGTGATGAAAGCTCTCGC
CGCCGCCTCGCCGGTCTCGGCGCCGCCTTCGCCCCGTCGGAGCGTCGCAGGTTTTGTTCT-TTCTCACTGAAGCTGCATT
TCCATTTATGCGCTCTAGTCTCTAGACTTGTAGTGA----TGTATGAGCACCTGCTCATAAGTTTCTGAATCCAGTGTGC
GTGACTGCGTGCTGTATGCAAATTTCACTGCACGATGTCCTTCCTTTGGGAGAGTTCAGAATTGACTGCATGCTTCTCTG
TTAAGGCTGCCATTTCGGTTGGAATAGCGTTGGTCATATCTCACTCGTTCGGGTCGTTCTCTGTTAGTCCAGATAGCGTT
TGTTTGGTTCAGGCATCAACACCAGCGACTATTTTCTTCCGAAGTACCAAGTTGATTCTTCCACATATTCAGGGTAGCCC
--------TTGTGATGTCCAAATCTATATTTTGCGTTACAAATTACACTGCAAAATGCTGTTTCAGCTGCTGATGGAATC
ATTATGTCTAGTCTATTTCGTTATTAACAAGCA------------------------------TGGCCTTAAGACATGCC
A-----TTCTGAACCTCGCATTTCAGTACCTGACACGCTGCATGTACAGGCTCGTCAGGTGCGCCGTGTCAAAGCCTGCA
CTCCTCATTCCGCGGCATCTCCCTGCGGTGCCGTCCCAGGAAACCGGCCCACCGCTCGCCGCCGCTACGCAGCTCCCGGG
CGGCGGCGCAGGTGGTGGCGATGAAGCCGGCGATCCAGTTCATCCAGGGCACGGACGAGCAGACGATCCCGGACGTGCGG
CTGACCAAGTCCCGCGACGGCACCAACGGGGTAGCCATCTTCGAGTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGA
GCTCGGGGACATCACGGGGTTCTACATGATCGACGAGGAGGGCATGCTGCAGACGGTGGACGTGAGCGCCAAGTTCGTCA
ACGGGAAGCCGGCCAGGGTGGAGGCCAAGTACGTGATGCGCACGGCCGGGGACTGGGACCGGTTCATGAGGTTCATGGAG
AGGTACTCGCAGGCCAACGGCCTCCAGTTCGTCAAGAATTAAGTCACATCTCCTCGATGTGCCTTGTGTGTTGCCCATGT
TCAGTTCAGTATAACTGTCGAGCTGGTAACGGAGGTGAATGATTGTACTAAAGGTGTCATGTGTATCTCTTGTGTAACTT
TGAC-ATTGTGTGAAATTTTGTATGCACCAGCTGAAAGCACGAACTGAGGAAAACCGGTAGAAAACAAGCATCTGCGACT
CAGACGCACCAGTCCCGACGTTGTGCATGTTGATGTTGTGTTAAC------AACTAGTTTCAGACTTCAGTTTAGTTTTT
TCTGAATAATAGCCAGAAGTACGATATGTTTTCATGCTGCGGCAGAATAGGTTGTAGCGTTTAATTCTCTGTAAGTTGTT
GGACACGATCAGTCCGTGGGATGGCGCGGGATTAACGGATCGTGCACAGCTAGTTTGCTATGTCGCTGAATAAAAGGAAA
AAAAG-GGAAAATGATGCAAAGTGTGCGCGTCGCCAAAACACCGTTTCCTCTTTGTGTTCTTCTTGTTAGTTTTGTGTTC
TTCAGAATTCAGAGCTAATCCACCCTC-----------------------------------------------------
-TTGGGAGCTGCTCCAACATTTGGCATCAGAGCCATGTTTCAGAAGCGATCCGACAGCTGGAAAAGAGGAGGAGGTTCGG
CGGCGGTGATCGGCGATGGAAGACACATCGCCGAAGAGGGATCAAAATAGGGGC----GCATCAGTGGCGGAAATTACAC
GCCGCCAGCGAAGAGGCCCGGAGAAGAGGGCGATGTGGTCGTGTAGCGAGCGCCACTGAGGACTGGTGGCGTCCCGATCC
AATACCCAATGCTCAACGATTCCAACTAAGGTCTTTGGGCCATGAAGATGAGAGTGCTGCTCCGCCCGTTCGGTGTCCGG
TCGGCGTTGGAGGGCACTGCGGAGTTCGACTAGGGCAAGGACGATGAGGCGTTCGCCGCTCTCTCCCAGCCCGTCCCAGT
CGCGGTGATGATGGCAGTGGCCAACTACGAGACTGCCCATGAGG
>chr3D_567
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------------CCATTATCACAAATCCAGAACAAAAGTTCTAACAAAATGACATATTAAATCACATTCAAATCAGAATT
TCAACTA-CAAATCTGGTGAGATGTGACC--TTTTTAC-----CACAATGGAATTTACACTTGAAA-TTTCCACATCAAG
TACTAGCTAGCATACGTGGTCCTTTAAGATGGAAAATTCTCAAACCAAAATGGATGGCGTAGAAGTGTCCACGGGCAAGG
CAGTGGACCAACAGGCGCCAGAGGAATGGGTAGCTCTGCTTGGGACACGCAGCCACCCAAACACTCCATTCACCCTCTTC
CCCGTCTGTACCACTCAAAACCTCACCTCCGCTTGTATTTCTATTTCCCCGTCCCTTCCTTCCTTCTAGACACCAATCCT
TCTTCCTCACCCGACTGCCCAACT--------TCCGGAGCAAGCGAATTGCATCATGCCCGCAGTGATGAAAGCTCTCGC
CGCCGCCTCGCCGGTCTCGGCGCCGCCATCGCCCCGTCGGAGGGTCGCAGGTTTTGTTCTCTTCTCACTGAAGCTGCATT
TCCATTTATGCGCTCTAGTCTCTAGACTTGTAGTGACCGATGTATGAGCGCCTGTTCATAAGTTTCTGAATCCAGTATGC
--------GTGCTGTATGCAAATTTCACTGCATGATTTCCTTCCTTTGGGAGAGTTCAGAATTGACTACATGCTTCTCTG
TTAAGGCTGCCATTTCGGTTGGAATAGCGTTGTTCATATCTCACTCGCTCGGGTCGTTCTCTGTTAGTCTAGATAGCGTT
TGTTTGGTTCAGGCATCAACACCAGCGACTATTTTCTTCCGAAGTACCAAGTTGATTCTTCCACATATTCTGGGTAGTCC
--------TTGTGATGTCCAAATCTATATTTTGCGTTACAAATCACACGCT-AAATGCTGTTTCAGCTGCTGATGGAATC
ATTATGTCTAGACTATTTCGTTAGTAACAATCATGGCCACCCGCAAAATAAAAATAAAAATCATGGCCTTAAGACATGCC
A-----TTCTGAATCTCACATTTCAGTACCTGACACGCTGCATGTACAGGCTCGTCAGGCGCGCCGTGCCAAAGCCTGCA
GTCCTCCTTCCGCGGCATCTCCCTGCGGTGCTGTCCCAGGAAACCGGCCCACCGCTCGCCGCCGCTACGCAGCTCTCGGG
CGGCGGCGCAGGTGGTGGCGATGAAGCCGGCGATCCAGTTCATCCAGGGCACGGACGAGCAGACGATCCCGGACGTGCGG
CTGACCAAGTCCCGCGACGGCACCAACGGGGTGGCCATCTTCGAGTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCGGA
GCTCGGGGACATCACGGGGTTCTACATGATCGACGAGGAGGGCGTGCTGCAGACGGTGGACGTGAGCGCCAAGTTCGTCA
ACGGGAAGCCGGCCAGGGTGGAGGCCAAGTACGTGATGCGCACGGCCGGGGACTGGGACCGCTTCATGAGGTTCATGGAG
AGGTACTCGCAGGCCAACGGCCTCCAGTTCGTCAAGAACTAAGTCACATCTCCTCGATGGGCCTTGTGTGTTGCCCATGT
TCAGTTCAGTATAACTGTCGAGCTGGTAACGAAGGTGAATGATTGTACTG-AGGTGTCATGTGTATCTCTTATGTAACTT
TGAC-ATTGTGTGAAATTTTGTATACACCAGCTGAAATCACGTAA-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------S-----SS------------------S----S--S-----------S-S-S--S----------------
---------S--------S---------S-------S--------S----------------------------------
--S-S-----SSSS------------------S---------------S--S----S-----------SS-SSS-S----
-----------S---------S-----S----------------S-------S-S---S---S-----------------
-------S--------------S---------S---SSSSSSS------------S----------S-------------
S------------------S-S-----SSS-S-------------S-------S----S-S----S--------------
----------S--------------------------------------------------S------------------
-----------------------------S--------------------------------------------------
------------------------SSSSSSSS---------------------------S--------------------
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-------S------------------------------------------------------------------------
---SS------------S--------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------S-----------------------------------------------------
SSSSSSSS--------------------------------S-----------------------S---------------
--------------------------------------------------------------------------SS-SSS
-SSSSS-------------------------------------S----------------S-S-----------------
------------------------------------S----------S------------S-------------------
-S--S--------------S------------------------------------------------------------
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-------------S--------------------S------------------------S--------------------
---------------------------------------------S-S----S---------------------------
----------------------------------S------S------S--SSSSS-SSSSSS-----------------
----S---------S-----------------------------------------------------------------
---------------S----------------SSS-SSSS--SSSSSSSSS-----------------------------
---------------------SSS---------S-----------------SS-------------------------S-
--S------S--SSS---------------S--S----------SS-----------S----S---------S--S----
----SS------S--S--------------------------S--S--------------------------S-------
------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---------------------------------S------S--S--------S----------------------S---
-------------------S----------S-S-----------S--S-SS---SSSS---S--------S---------
--------------------------------S----------S------S-----------------------------
----S-----------------------S-----S--------------------------------SS--------S--
------------------------------S---S-------------------SS-------------S---------S
---------------------------S----------------
>forward_987
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-------TTCTTCCTCACCCAACTGCC-----------------------------------------------------
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>reverse_2857
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--------------------------------------------------------CAGCAGCAGTGGCGAAAATT----
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