>input_sequence_61729
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------------------------------------------------------------ATGGATGTTTCTCTGAGCAT
CCCTGCTGCCCGCGGCGTGGGC---GACGACACCGACAGGAGGGCGCCTCGAAACTCGCCTTCCTTCAAGATCGTGCCGC
TGCACGACGAGATGGCCAAGCCATCCCCCGGCGGCCACGCGACCCTCGGCGCCGAAAGGGCGGCGGTGCTCCTCGTGAAG
AAGGTGCTGGCGGAGCTGCTGGGGACGTTCTTGCTCCTCTTCGTCCTGCTGTCGGCGCTGATCATGAACGCGACCCACGA
CGGCGCCCTGGGCCTGCTGGGCGTGGCGGCGACGGCGGGGCTGGCCGTGACGGTGCTCGTGGCGTCGCTGGTCCACATCT
CCGGGGCCCACCTGAACCCGGCGATAAGCGTCTCCATGGCCGTGTACGGCTACCTCCCGCGCGCCCACCTCGCGCCCTAC
ATGGCCGCGCAGTTCCTAGGCGCCATCGCCGCGTCCTTCGTGGCCAAGGCGGTCTACCACCCGGCGAACCCCGGCGCCAT
TGTGGCCACCGTGCCCACGCTCGGCACCGCGGGGACCTTCTTGGTCGAGTTCCTCACCACCTTTGTCCTCCTCTTCGTAA
TCGTCGCCCACGCCACCGATCCCAAGGCGGTAATAACATCTCCTTGCTCATCGATCTCATTTGCTCAGT-----------
--------TATATGC---ACTATGGTCTTGCCTTTTGTCCACCAGCTTAATGATGAATTGGACGTTATGGGCCATTGTTT
CTTTTCTTCAGGTGAAGGAGCTGATAGCAGTGGCAGCCGGGGCAGCAATCATGATGAACGCCCTTATCTCTGCGTAAGTG
AAATCAATCAATCCATCCATCCACGGTTAAATGAATCTGTACTCCAACTGATTTTACGTAGCTAGTACTATAATAAATTA
CGTATG--TATCTGACATAATGCATGCGTGTATGTGACTTTGAGCAGGGAGTCAACGGGAGCGTCCATGAATCCGGCGAG
GACGCTGGGGACGGCCATCGCCACCGGGACGTACACCAAGATCTGGGTCTACATGGTGGCGCCGCCGCTCGGAGCCATCG
CCGGGACCGGGGCTTACATTGCGCTCAAGCACTGA---------------------------------------------
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>chr7A_1_TraesCS7A01G303800
TCAATGCTACTGCAGCAACTCAGTACACGTTCGTGTTTGTTCTGTTCAAGATCCTGCCAGAGTTTCTTCTTCTGGTATCT
GTTCTAGATATGTTCTGTTCTATTTCACATCTTGAGATGTTATTTGTCTTCTCTCTGTTAGATTGCATGACTTGTTTCAT
CTTTACTATATAGTCATGTTTCATCTACTATTTATGTGGATTTAAATCATATGATAAATTATTCATATTTCCAACAAATA
CATCATTTGAACCATGGCTGAACATATCACTGTCTTATATCTTGTCGATCAGCCTGAGCTTGCCGCACTCGATCGTGAC-
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----------------------------------------GTACATTCATTCGGTTGGTCACG----CTTTTTTTTATGG
CAGCCACACT------------TTAGCTAATATAGTTTTCAAGTAAGTACAGCCAGGTAACAGTCAAATAAAATGTGTCC
GTCATTCTCTCTGCTCCTTATTCAAGGGAATGTTTGGCATATAAATTTTAGAGGAA----------------------CT
GAGAACATTCCCTGGTTCCAACATATGGCCTCCCCTAAACCCTCCTCCCATCATCAGAAACGAAACATGAGAGAATTCA-
GACGTCAAGGCGGTCGACCTGGTCGTGAGGAGCAAGAAGATGCCTATGGAATGTCTGACCAAGTAAAACGGGAATGAACA
CGCCAGA------CATCGACAAGGACATTGCTTCAGCG-----------CATATTCTCACTTTCTCATGTGTCGTCGATG
GATCAATCATAGGCTCA-----TCGGCCAGTGGTTTGCAGCTAATCGGATGTGTAC----CTTTTTGTATGGACAAGGAC
AATGATCCACAATGCATGCCGTGCCCGCCAAAA-CGCAAATTAACCTAGGCCTGCCTTCTCTGCTTCTGTTGC----ATA
TATATACACCTCCCCAA---------------------------------------------------------------
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-------------------------------------------------------------------GCATCATTGGAAC
TCACCTCGATCC---------------ATCCAGTTTAAGCCCTTCGCTCGATCAGGTATATA----GATAGATAGTCTGT
GTTGTGTTGGTACAATTACTAATCACTAACCAGAGGATGGAGTTGAGCAGGAGCGTGACCATGGATGTTTCTCTGAGCAT
CCCTGCTGCCCGCGGCGTGGGC---GACGACACCGACAGGAGGGCGCCTCGAAACTCGCCTTCCTTCAAGATCGTGCCGC
TGCACGACGAGATGGCCAAGCCATCCCCCGGCGGCCACGCGACCCTCGGCGCCGAAAGGGCGGCGGTGCTCCTCGTGAAG
AAGGTGCTGGCGGAGCTGCTGGGGACGTTCTTGCTCCTCTTCGTCCTGCTGTCGGCGCTGATCATGAACGCGACCCACGA
CGGCGCCCTGGGCCTGCTGGGCGTGGCGGCGACGGCGGGGCTGGCCGTGACGGTGCTCGTGGCGTCGCTGGTCCACATCT
CCGGGGCCCACCTGAACCCGGCGATAAGCGTCTCCATGGCCGTGTACGGCTACCTCCCGCGCGCCCACCTCGCGCCCTAC
ATGGCCGCGCAGTTCCTAGGCGCCATCGCCGCGTCCTTCGTGGCCAAGGCGGTCTACCACCCGGCGAACCCCGGCGCCAT
TGTGGCCACCGTGCCCACGCTCGGCACCGCGGGGACCTTCTTGGTCGAGTTCCTCACCACCTTTGTCCTCCTCTTCGTAA
TCGTCGCCCACGCCACCGATCCCAAGGCGGTAATAACATCTCCTTGCTCATCGATCTCATTTGCTCAGT-----------
--------TATATGC---ACTATGGTCTTGCCTTTTGTCCACCAGCTTAATGATGAATTGGACGTTATGGGCCATTGTTT
CTTTTCTTCAGGTGAAGGAGCTGATAGCAGTGGCAGCCGGGGCAGCAATCATGATGAACGCCCTTATCTCTGCGTAAGTG
AAATCAATCAATCCATCCATCCACGGTTAAATGAATCTGTACTCCAACTGATTTTACGTAGCTAGTACTATAATAAATTA
CGTATG--TATCTGACATAATGCATGCGTGTATGTGACTTTGAGCAGGGAGTCAACGGGAGCGTCCATGAATCCGGCGAG
GACGCTGGGGACGGCCATCGCCACCGGGACGTACACCAAGATCTGGGTCTACATGGTGGCGCCGCCGCTCGGAGCCATCG
CCGGGACCGGGGCTTACATTGCGCTCAAGCACTGATGCACCGGTCCATCAATGCTTGCACGTTAGGATGAAAAACTCTAC
CAGAGAATGCTGCTAGGTCTAAAATTTCTAAAAG-AAAAATAGAAATTGTGAATTTGCTGATTCATGCAACTAAACAAGG
TAAAGAGTGATCAGTGCATAGCTGATAGATGGATCTTTTTTGTTCCCAGTAGCAAAGATTGTGTCTGCACTCTGCAGGCC
GGCCGCACGCACGAAATATTCCATTTCGGCAATCTGGC-TGACATTTCCCGGGAACATTTTCCCAGCGAACTGCTCCTTA
TAGCCGCCAGATCTCGCAGCACAAATCTTGGAGCAAACTCGATTCCACATCAGATCTGAGAAAACTTTCGCATCTCACCT
CTCCTTATCCATTCCCTCAGCCGCTTGCCCTCCCGTTCGTCCAGGATTACTTGTCGCTGGGAGAGATGGTACTCCCTTCG
TCCAAAATTACATGTCGCAGAAATGCATATATCTAGACATATTTTTAGTTCTAGATACATCTATTTCTCAGAAGCCGTGA
TCCCGTGATCTGAGATTTGCCAGTGCCATCGTAGCCATCTGTGTACCCGTGAGGCGGTCCTCCGCTCGGACTCACGGATG
ACGTGATGTGAACTTACACTACTTGTGAGGGCGTCAAAGCAAGAGACGGTGTATGGTGGTGTCGTCTGATATAGATCTAT
CACCGACTGCCGCTTGTGAGGATGTTGCGGTGCTGCGAGAGCGTCCCAAGGGATTTTGGCGATGTCAATGACCTTTCACC
TTTGTCAGTGGCCTTATCGCGTGTGCAATGCTGCTAGAATAGTGGAAAGTGGAAGCGACAACACAAGATGACTTCGGTTT
TGGTGGTGCTTCTCAGGTACCCGGTCTCGAGCTCCGGGGTGAAAATCCTAGGTGTGACTAGGTGTGACCCTGGTCTGTTA
TACCTGGTAATGGCGATGGTTTTCATCGTTATCTTGTTGAAGACATTACTTGGATCATGCTCAGACTTTATCTCCAG
>chr7B_2
-CAATGTTACTGCCGCAGCTCAGTGCGTGTTCGTGTTCTTTTTGTCCAAGATCCTGCTAGAGTTTCTTCCTCTAGTATCT
GTTCTAGATATGTTCTGTTCTAATTCACATCTTCAAATGTTACTTGCCTTCTCTCTGTTAGATTGCATGACTTGTCT-AT
TTTTAATATATAGTCATGTTTTATCTACTATTTATGTGGATTTAAATCATATGATAAATTGCTCATAATTCCAAGGAGTA
CATCATTTGAACCATGGCCGAACATATCGCTGTCTTATATTTTGTCGATAAGCCTGAGCTTGCCGCACTTGTGACGTACT
CCCTCCGTCCGAAAATAGTTGTCATCAAAAAGAATAAAAGGGAATGTATCTAGATGTATTTTAGTTCTAGATACATCTCT
TTTCATCCATTTTGGTGACAAGTATTTTCGGACGGAGGGAGTACATTCATTCGGTTGGTCACGTCCTCTTTTTTTTTTGA
AAGGACAATCATCATTCTCTCGTTAGCTGATAAAGTTGTCAAGTAAGTACAGCCAGGTAACAGCCAAATAAAATGTGCCC
ATCATTCTCTCTGCTCCTTATTAAAGGGAATGTTTGCCGTATAAAT--------------------------------CT
GAGAACATTCCCTCGTTCCAACATATGGCCTCCCCTAAAGCACCCTCCCATCATCAGAAACAAAACATGAGAGAATTCA-
GACGTCAAGGCGGTCGACCTGGTCGTGAGGAGCAAGAAG-----------ATGTCTGACCAAGTAAAACGGGAATGAAGA
CGCCAGA------CATCGACAAGGACATTGCTTCAGCG-----------CATATTCTCACTTTCTCATGTGTCGTCGATG
AATCAATCATAGGCTCA-----TCGGTCAGTGATTTGCAGCTAATCGGGTGTGTACGTACCTTTTTGTATGGACAAGGAC
AATCATCCACAATGCATGCCGTGCCCGCCAAAA-CCCAAATTAACCCAGGCCTGCCTTCTCTACTTTTGTTGCATATATA
TATATACACCTCCCCAA---------------------------------------------------------------
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-------------------------------------------------------------------GCGTCATTGGAAC
TCACCTCGATCC---------------ATCCAGTTTAAGCCCTTCGCTCGATCAGGTATATAAGTAGATAGATAGTCTGT
GTTGTGCTGGTACAATTACTAATCACTAACCAGAGGATGGAGTTGAGCAGGAGCGTGACCATGGATGTTTCTCTGAGCAT
CCCTGCTGCCCGCGGCGTCGGCGGCGACGGCACCGACAGGAGGGCGCCTCGAAACTCGCCTTCCTTCAAGATCGTGCCGC
TGCATGACGAGATGGCCAAGCCATCGCCGGGCGG---------CCGCGGCCACGAGAGGGCGGCGGTGCTCCTCGCGAAG
AAGGTGCTGGCGGAGCTGCTGGGGACGTTCCTGCTCCTCTTCATCCTGCTGTCGGCGCTGATCCTGAACGCGACCCACGA
CGGCGCCCTGGGCCTGCTGGGCGTGGCGGCGACGGCGGGGCTGGCCGTGACTTTGCTCGTGGCGTCGCTGGTCCACATCT
CCGGGGCCCACCTGAACCCGGCGATAAGCGTCTCCATGGCCGTGTACGGCTACCTCCCGCGCGCCCACCTCGCGCCCTAC
ATGGCCGCGCAGTTCCTAGGCGCCATCGCCGCCTCCTTCGTGGCCAAGGCGGTCTACCACCCGGCGAACCCCGGCGCCAT
TGTGGCCACCGTGCCCACGCTCGGCACCGCCGAGACATTCTTGATCGAGTTCCTCACCACCTTTGTCCTCCTCTTCGTAA
TCGTCGCCCATGCCACCGATCCCAAGGCGGTAATAACATCTCCTTGCCCATCGATCTCACTTGTTCAGC-----------
--------TATATGTCCTACTATTGTTTTGCCTTTTGTCCACCAGCTTAATGATGAATTGGACGTTATGCGCCATTGTTT
CTTTTCTTCAGGTGAAGGAGCTGATAGCAGTGGCAGCCGGGGCAGCAATCATGATGAACGCCCTTATCTCTGCGTAAGTG
AAATCAATC--------CATCCACGGTTAAATGAATCTGTATTCAAACTGATTTTACCTGGC---TAGTATGATAAATTA
CGTATTACTATCTGACATAATGCATGCATGTATGTGACTGTGAGCAGGGAGTCAACGGGAGCGTCCATGAATCCGGCGAG
GACGCTGGGGACGGCCATCGCCACCGGGACCTACACCAAGATCTGGGTCTACATGGTGGCGCCGCCGCTCGGAGCCATTG
CCGGGACCGGGGCTTACATTGCGCTCAAGCACTGATGCACTGGCCCATCAATGCTTGCACGTTGGGATGAAAAACTCTAC
CAGAGAATGCTGCTAGGTCTAAATTTCTAAAGAAAAAAAAAAGAAATTGTGAATTTGCTGATTCATGCAACTAAACGGGG
TGAAGAGTGATCAGTGCATAACTGATGGATGGATCTTTTTTGTTCCCAGTAGCAAAGATTGTGTCTGCACTCTGCAGGCC
GGCCGCACGCAAGAAATATTCCATTTCGGCAATCTGGCTTGACGTTTCCCGGGAACATTTTCCCAGCGAACTGCTCCTTA
TAGCCGCCAGATCTCGCAGCACAAATCTTGGAGCAAACTCGATTCCTCATCAGATCTATGAAAACTTTC-----------
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>chr7D_232
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-----------------------------------------------------------------------CAACAAGTA
CATCATTTGAACCATGGCCGAACATATCACTGTCTTATATCTTGTCGATCAGCCTGAGCTTGCCGCACTTGTGACGTACG
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---------------------------------------------TTCATTCGGTTGGTCACGTTTTTTC---TTTATGG
CAGCCACACA------------TTAGCTGATACAGTCGTCAAGTAAGTACAGCCAGGTAACAGCCAAATAAAATGTGTCC
ATCATTCTCTCTGCTCCTTATTCAAGGGAACGTTTGCCATATAAATTTCACAGGAAAACAATTTAATTCATCATGGATCT
GAGAACATCCCCTCGTTCCAACATATGGCCTCCCCTAAATCGTTCTCCCATCAGA--AAATGAAACATGAGAATTGATGT
GACGTCAAAAGGGTCGACCTGGTCGTGAGGAGCAAGAGGATGCCTACGGAATGTCTGACCAAGTACAACGAGAATGAGCA
GGCGAGGCCAATCCATGGACTAGCACATTACTGGTACTATAATCATCCACACATTCTCACTGTCTCATCAT-------TG
AATCAATCATAGGCCCGTCTTGTCGGGCAGTGCTTTGCACCTAATCATCAGATGGTTTCTTTTGTTT---------GGAC
AAGCATCCACAATGCATGCCGTGCCCGCCAAAAACCCAAATTAACCCAGGCCTGCCTTCTCTACTTCTGTTGCATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCATTGGAAC
TCAACTCTCATACTCTCACTCCATCCAATCCAGATTAAGCCATTCGCTCGATCAGGTATATA----GATAGATAGTCTCT
GTTGTGTCGGTG-------TAATTACTAACCAGAGGATGGAGTTGAGCAGGAGCGTGACCATGGATGTTTCTCTGAGCAT
CCCTGCTGCCCGCGGCGTCGGCGACGAC---ACCGACAGGAGGGCGCCTCGAAACTCGCCTTCCTTCAAGATCGTGCCGC
TGCACGACGAGATGGCCGAACCGTCGCCGGGCGGCCACTCGACCCTCGGCGCCGAGAGGGCGGCGGTGCTCCTCGTGAAG
AAGATGCTGGCGGAGCTGCTGGGGACGTTCCTGCTCCTCTTCGTCCTGCTGTCGGCGCTGATCATGAACGCGACCCACGA
CGGCGCCCTGGGCCTGCTGGGCGTGGCGGCGACGGCGGGGCTGGCCGTGACGGTGCTCGTGGCGTCGCTGGTCCACATCT
CCGGGGCCCACCTGAACCCGGCGATAAGCGTCTCCATGGCCGTGTACGGCTACCTCCCGCGCGCCCACCTCGCGCCCTAC
ATGGCCGCGCAGTTCCTAGGCGCCATCGCCGCGTCCTTCGTGGCCAAGGCGGTCTACCACCCGGCGAACCCCGGCGCCAT
TGTGGCCACCGTGCCCACGCTCGGCACCGCGGGGACATTCTTGGTCGAGTTCCTCACCACCTTTGTCCTCCTCTTCGTAA
TCGTCGCCCACGCCACCGATCCCAAGGCGGTAATAACATCTCCTTGCTCATCGATCTCACTTGCTCAACAACGAGTACTA
CTACTATATATATGC---ACTATGGTCTTGCCTTTTGTCCACCAGCTTAGTGATGAATTGGACGTTATGCGCCATTGTTT
CTTTTCTTCAGGTGAAGGAGCTGATAGCAGTGGCAGCCGGGGCAGCAATCATGATGAACGCCCTTATCTCTGCGTAAGTG
AAATCAATC--------CATCCACGGTTAAATGAATCTGTACTCCAACTGATTTTACGTAGCTAGGAGTATAATAAATTA
CGTAT---TATCTGACATAATGCATGCATGTATGTGACTGTGAGCAGGGAGTCAACGGGAGCGTCCATGAATCCGGCGAG
GACGCTGGGGACGGCCATCGCCACCGGGACGTACACCAAGATCTGGGTCTACATGGTGGCGCCGCCGCTCGGAGCCATCG
CCGGGACCGGGGCTTACATTGCGCTCAAGCACTGATGCACCGGCCCACCAATGGTTGCACGTTAGGATGAAAAACCCTAC
CAGAGAATGCTGCTAGGTCTAAATTTCTAAAGGAAAAAA-TAGAAATTGTGAATTTGCTGATTCATGCAACTAAACAATG
TAAAGAGTGATCAGTGCATAACTGATAGAAGGATCTTTTTTGTTCCCAGTAGCAAAGATTGTGTCTGCACTCTGCAGGCC
GGCCGCACGCAAGAAATATTCCATTTCGGCAATCTG--------------------------------------------
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>SNPs
S-----S------S---S------S-SS---------SS--S---S-----------S-----------S---S------
----------------------S----------S-S------S---S----------------------------S-S--
S----S---------------S--------------------------------------SS-----S---------S--
------------------S--------------------------------------------------S-SSSSSS---
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---------S------------------S---S----S-------------------------S----------------
S-----------------------------------S-----------S-S-----------------------------
-------------S-------------------------S-S--------------------------------------
----------------------------------------------S---------------------------------
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S-------------------------S-----S---------------S-------------------------------
---S-------------------------------S----------S---------------S-----------------
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------------------S----------S--------------------------------------------------
-------------------------S--S---------S----------------S------------------------
------------------------------S-------------------------------------------------
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------------------------------------S-------------------------------------------
-----------------------------------------------------------S--------S-----------
---------------------------------------------------------------------S----------
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---------SSSSSSSS--------------------------------------------------S------------
-----S---------------------S-----------S----------------------------------------
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-------------------------------------------S------------------------------------
-----------------------S--SSS--S-S----------------------------------------------
--------------------S-----------------------------------------------------------
-----------S-------------------------------S------------------------------------
----------------------------------------------S----------SS----------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_509
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---------TGGCAGCCACACTTTAGCTA---------------------------------------------------
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>reverse_1871
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------------------------------TTGCTCCTCTTCGTCCTGCT------------------------------
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>forward_1023
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-------------------------------------------ACCTAGGCCTGCCTTCTCTG-----------------
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>reverse_3172
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---------------------------------------------------TGTCGCTGGGAGAGATGGTA---------
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