>input_sequence_61709
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----------------------------------ATGGCTCGCGGCCAGATCACACTGCTCCTCCTCTTCCTCCTGCTCT
CATCGACCGCGCTCCCGTCTCTGGCTCAACAGACCAACAGCACGGGCCACACCCGTTCCTCCAGAACCGCCGGCGGGTTC
ACGCCCACCACCGTCGTCGTGCTCGTCATCCTCATCGCGGCCTTCGTCGTCCTCACGCTCTTTTCGATCTACATCAACCG
CTGCACCGGCGGGCACCCTGTCCCTCGCCGGCCGTTCCGTAGCACGGCCCCAGATCAGCCCGTCGATGCCGCCGCCCACT
CGGATCGCTGCCGCCCCCGCGGCATCGACAGGGAGGTCGTGGAGGCCTTCCCGACGGCAGTCTACGGCGATGTGAAGGCG
CGCATGGCGACCACCAAGTCGGGCCCGCTCGAGTGCGCCGTCTGCCTCACCGAGTTCGAGGACAGCGACGAGCTCCGGGT
CCTCCCGGCGTGCTGCCACGTCTTCCACCCGGACTGCATCGACCCGTGGCTCGCCGGCGCGGTCACCTGCCCGCTCTGCC
GGGCCGACCTCACCGAGACCCCCGCGATCCCGGCCGGCGCCGAGAGCCGCGGCTACCTGACGGACACGGCCGTGCAGGAG
GAGCCGGAGGAGCTCGACGAGGAGTGCTCGGTGGTCTCTTTCACGGCTGAATCTCTCACCAGTTTCAGCACGGTATGGAG
GCACGAGTTCACGGGCGCGGAGTACAACCACTACCGCAGAACGCAGTCGGCCATGGACGCGCCGGACCGGCACACTCTCA
GGCTGCCGGAGCACGTCATGAAGGAGCTCGCCGCCGTCCGGAGGCACCGGCGAGCGGCTAGCCTCGCCGCAGAGTACCCG
GACACCGCGGATCAGAGGACACCGGGGTGGCTGACCTCGTTCCTGCGGTCCATGTCCTGGCAGCGGCAGAGCCGCGGGGA
CTCGGACGCCGGGGAGGAACACGGCGGCAGCAAACGGATTCATCCCGTGGCCGGTGCGCCGGTTGAAAAACCGAGTGGGT
CGGGGTCCGGCGGGGACGAGAAAAAAGAGAGCTCCGACGTTGACGCGTTAAACCGGGTTTGA------------------
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>chr4B_1_TraesCS4B01G304400
CTTGGATTCGGTGTAAACTTATACACCCGGATTTAATCTACAAGTGTATTTTACCGGTCGCAGTGTTATTTCCGCCTAGA
TTGAAAACGACGGCTCGAGGTCTGTTTTGGTTACAAGTGTATTTAGGAGTAAACCAACGATCCAAGCGGGGCCTAATAGA
AGTAACAAAACTCTACTTTTAAAAGGCCTGGCCTAATTATCTATTGTTAGAATTTGGCTCATTGAATCTGTA--------
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-----------------------------------------------------------------------AACAAGGCC
CCCTCATCAAAAAAGAAAAAAACTTTAAACAAGGGACGTTATGTGCACAAAGACTCTGACCAAATGCAGCCATGAAAAAG
GGCATGAGATGAGACGGT--TACAAATTTAAATTAAAATAACCTGGCATTCGATATCCTCCACAAGATTACTATGCGCTA
GACAGAAGATAGAGAAATGGCGAACCAATCTGTGGTTGGATGGTTAGAGGGACTGTGGTATCCCAGTCCATCAGGGTTCA
AATCCTGGTGCTCGCATTTATTCCTGTAGACGTTCCCGTCGACAACGAGGTGACTACGGTGACTTCGTAAATTTCAAGAT
GATATAATATATTGTCTCAGTCTTTTGGATGTGCTCATAGGGATAGGTGTACGTGTGTGCGTTCATAGGGATGAATGTAT
ACGCGTGTATATGAGTGCTTGCGTATGTCCTTGTGTTAAAAAAAGCTAGAGAAACGAGAGACCAATAATTCTACTTTTTA
TAT------ATTTGCCTGGGCTGACGAACATGTCAGCAGCCAATCAGAAGCTCGGTCAGCCG------------------
-------------------------------------------TCCCACATGACCACGTCCTGTTTACCCAAGTCCCTGA
TTGGTGGTCCCGCACAAACATTCGCTACGTACATCCCTATCTTGAGCTTACGTTACACTTTTTCGTCCGGCGTAATCAAA
CACTC----CCCGTGCCATCAAACCCTTCCTCATT-TTCTTTCTTTTTCTTTCTCTCCGGCGCCACGATAAATCTGTCCG
GCCGCCGGCGGTTC-CCCCTGCCAAGAGACGGCAATGGCTCGCGGCCAGATCACACTGCTCCTCCTCTTCCTCCTGCTCT
CATCGACCGCGCTCCCGTCTCTGGCTCAACAGACCAACAGCACGGGCCACACCCGTTCCTCCAGAACCGCCGGCGGGTTC
ACGCCCACCACCGTCGTCGTGCTCGTCATCCTCATCGCGGCCTTCGTCGTCCTCACGCTCTTTTCGATCTACATCAACCG
CTGCACCGGCGGGCACCCTGTCCCTCGCCGGCCGTTCCGTAGCACGGCCCCAGATCAGCCCGTCGATGCCGCCGCCCACT
CGGATCGCTGCCGCCCCCGCGGCATCGACAGGGAGGTCGTGGAGGCCTTCCCGACGGCAGTCTACGGCGATGTGAAGGCG
CGCATGGCGACCACCAAGTCGGGCCCGCTCGAGTGCGCCGTCTGCCTCACCGAGTTCGAGGACAGCGACGAGCTCCGGGT
CCTCCCGGCGTGCTGCCACGTCTTCCACCCGGACTGCATCGACCCGTGGCTCGCCGGCGCGGTCACCTGCCCGCTCTGCC
GGGCCGACCTCACCGAGACCCCCGCGATCCCGGCCGGCGCCGAGAGCCGCGGCTACCTGACGGACACGGCCGTGCAGGAG
GAGCCGGAGGAGCTCGACGAGGAGTGCTCGGTGGTCTCTTTCACGGCTGAATCTCTCACCAGTTTCAGCACGGTATGGAG
GCACGAGTTCACGGGCGCGGAGTACAACCACTACCGCAGAACGCAGTCGGCCATGGACGCGCCGGACCGGCACACTCTCA
GGCTGCCGGAGCACGTCATGAAGGAGCTCGCCGCCGTCCGGAGGCACCGGCGAGCGGCTAGCCTCGCCGCAGAGTACCCG
GACACCGCGGATCAGAGGACACCGGGGTGGCTGACCTCGTTCCTGCGGTCCATGTCCTGGCAGCGGCAGAGCCGCGGGGA
CTCGGACGCCGGGGAGGAACACGGCGGCAGCAAACGGATTCATCCCGTGGCCGGTGCGCCGGTTGAAAAACCGAGTGGGT
CGGGGTCCGGCGGGGACGAGAAAAAAGAGAGCTCCGACGTTGACGCGTTAAACCGGGTTTGACCTCTTCGTTCGTTCTTG
TGTGTAATCTTCGTCTGAGTTCCTTATGCAAATAGAAATTTTATAGACCTATAGACTCATGGTTTTACTCGGCATTCCAT
GGCTTGCGATCTCCTTGTTTCTTTCTCTCTTTGAATTT----GGAGGAAGATCTCATTGGATTCATGCACCTGCTGCCGT
AGACAGAAGTTTTCAGATTATGCATTACATCGGCCTAAATTAATTGTGCAATTAGTTCTGCTACACCAATTACCGCGTTT
ACTTGTGCGACTTATGGGCAAGGAGTTAATTACTTCCTATGTTACCTGGTGGCCCTTGATTGCACTTCCCCGACTGTCAA
CCACGCTTTCACTAAGAGCAAATACAATACAATGACATACGCGAGCTGTAAGACTTTAAATATTACTATATTTTTATTGA
GTTGGAAGAGAAAGAAGAAGAGAAAGAAAAAAGAAACAGGCTGCAAACTAACAGCTGGTTGTAGTGCTCCTAAAGACTTT
GTGAGAGAATAAGGTGCATCATGTATCAATAAAGTTGTACCTGCTTACATCTTTGCTGGCTATATGGTTGATTATAGATG
ACGTGGCAATATCTTATAGCCGGCAGCTGGCTATACGATTCATCATGCTCTACAAACACACTCCATAAGAGCATGGTACA
GCCTAGAGCGGACTATATGAAGTTATCATGTGTTGTAGCCAACTTAATAGTCCACTGTTACAATAGTTAATATGATTAGT
ATGCTATATCATTATTATGCAACCCATTTGTTTCTCTCACAAAGATTGTTGGTTTGTGCTACAGCGGGTTGTAACATTGT
AGCCCGCTTCTCTTCTTTCTCATCTCCTATCTTCTCCAACTAGGCACAAATCTGATGTGGCTTTTCTTATAGACTGCCTA
CTTCACTCTATTATACTTGCTCTAAGCAAAATCCACATCTTTTTTCCTTGTCCGCCACCGCTAAGAGATCCGACCCTTCT
GGCATCGGATTCCGGCGGCTCCCCTC
>chr4A_154
TAATAG--------------------------------------------------------------------------
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AGTAACAAAACTCTACTTTTGAAAGGCCTGGCCTAATTATCTATTGTTAGAATTTGGCTTATTGAATCAGTAGTAGTCAA
TGTGTATGTGCAATGCATGTTAATTTAAAAGTATATTAAGTGCATGCGGATATTAACTAGGATATTATTTACGTGTTACT
ATATTTGGTATGAAATTAATTGCATGCTAATCGTGTTAAGCGCTCGACATTAAAGCAATCTAGGTCGTTGGATTGACATG
ATTTGATGGTTAAGATTAAGTCGATCTGCCCCTTTGAATCTTTTTATATTGATATAAGATATAGATATAGAAACAAGGAC
CTCGCAAAAA--------------------------------------AAAAACTCTTACCAAATGCAGCCATGAAAAAA
GGCATGAGATGAGACGGT--TACAAATTTAAATTAAAATAACCCGGCATTCGTTGTCCTCCACAGGATTACTACGCGCCA
GAG-----------------------------------------------------------------------------
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----------------------------------------AAAAGCTATAGAAATGAGAGGCCAATAATTCTACTTTTTT
ATTAAGGCGATTTGCCTGGGCTGACGAACATGTCAGCAGCCAATGAGAAGCTCGGTCAGCCGCACCGCCCG---CTCTTC
TTCCACCTCTCACCGG-----CGAGGCGAGCTACACGTCCCCGTCCCACATGACCACGTCCTGTTT-CCCCAGTCCCTGA
CTGGTGGTCCCGCACAAACATTCTCTACGCACATCACCATCCCGATCTTACGTTACACTTTTTCGTCCGGCGTAATCAAA
CACTTCCTTCCCGTTCCATCAAAACCTCCCTCCTTTTTCTTTCTTTTCCTTTCTCTCCGGCGCCACGATAAATCTGCACG
GCCGCCGGCGGTTCGCCCCTGCCAAGAGACGGCAATGGCTCGCGGCCAGATCACATCGCTACTCCTCTTCCTCCTGCTCT
CATCGACCGCGCTCCCGTGTCTGGCTCAGCAGAGCAACAGCACGGGCCACACCCGTTCGTCCAGAACCGCCGGCGGGTTC
TCGCCGACCACCGTCGTCGTGCTCGTCGTCCTCATCGCGGCCTTCGTCGTCCTCACGCTCTTTTCGATCTACATCAACCG
CTGCACCGGCGGGCACCCCGTCCCTCGCCGGCCGTACCGTAGCACGGTCCCTGATCAGCCCGTCGATGCCGCCGCCCACT
CGGATCGCTGCCGCCCCCGTGGCCTCGACAAGGAGGTCGTGGAGGCCTTCCCGACGGCCGTCTACGGCGACGTGAAGGCG
CGCATGGCGACCAACAAGTCGGGCCCGCTCGAGTGCGCCGTCTGCCTCACCGAGTTCGAGGACAGCGACGAGCTCCGGGT
CCTCCCGGCGTGCTGCCACGTCTTCCACCCGGAGTGCATCGACCCGTGGCTCGCCGGCGCGGTCACCTGCCCGCTCTGCC
GGGCCGATCTCACCGAGCCCCCCGCGATCCCGGCCGCCGCCGAGAGCCGCGGCTACCTGACGGACACGGCCGTGCAGGAG
GAGCCGGAGGAGCTCGACGAGGAGTGCTCGGTGGTCTCTTTCACGGCTGAATCCCTCACCAGCTTCAGCACGGTATGGAG
GCACGAGTTCACGGGCGCGGAGTACAACCACTACCGCAGGACGCAGTCGGCCATGGACGCGCCGGACCGGCACACTCTGA
GGCTGCCGGAGCACGTCATGAAGGAGCTCGCCGCCGTCCGGAGGCACCGGCGGGCGGCCAGCCTCGCCGCAGAGTACCCA
GACACCGCGGATCAGAAGACACCGGGGTGGCTGACCTCGTTCCTGCGGTCCATGTCATGGCAGCGGCAGAGCCGCGGGGA
CTCGGACGCCGGGGAGGAGCACGGCGGCAGCAAACGGATTCATCCCGTGGCCGGAGCGCCGGTTGAAAAACCGAGCGGGT
CGGGGTCCGGCGGGGACGAGAAGAAAGAGAGCTCCGACGTTGACGCGTTAAACCGGGTTTGACCTCTTCGTTCGTCCTTG
TGTGTAATCTTGTCTGAGTTTCCTTATGCAAATAGAAATTTTACAGACCT--------------------------CCAT
GGCTTGCGATCTCCTCGTTTCTTTCTCTCTTTGAATTTGGAAGGAAGAAGATCTCCTTGGATTCATGCACCTGCTGCCGT
AGACAGAAGTTTTCAGATTATGCATTACATCGTCGTGAATTAATTGTGCAATTAGTTCTGCTACAGAAATTACCGCGTTT
ACTTGTGCGACTTATGG-CAAGGCGTTAATTACTTCCTATGTTACCTGGTGGCCCTTGACTGCAGCTCCCTGGTTGTCAA
CGACGCTTACACCAAGA---------------------------------------------------------------
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>chr4D_194
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---------------------------------TAATTATCTATTGTTAGAATTTGGCTCATTGAATCTGTA--------
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-----------------------------------------------------------------------AACAAGGCC
CCGCAAAAAAAAAAGAACAAGGGACGTA-----------TATGTGCACAAAGACT--GACCAAATGCAGCCATGAAAAGA
GGCATGAGATGAGAGGGTTATACAAATTTAAATTTAAATAACCCGGCATTCGATATCGTCCACACGATTACTACGCGCCA
GAC-----------------------------------------------------------------------------
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----------------------------------------AAAAGCTAGAGAAATGAGAGACCAATAATTCATCTTTTTA
TATAAGGTAATTTGCCTGGGCTGACGAACATGTCAGCAGCCAATGAGAAGCTCGGTCAGCCGCACCGCCGCCCTCTCTTC
TTCGACCTCTCACCGGTAAGGCGAGGCGAGCTACACGTCCCCGTCCCACATGACCACGTCCTGTTTACCCCAGTCCCTGA
CTGGTGGTCCCGCACAAACATTCCCTACGCACATCCCCATCTTGATCTTACGTTACACTTTTTCGTTCGGCGTAATCAAA
CACTTCCCGTTC---CCATCAAAACCTCCCTCCTT-TTCTTTCTTTTTCTTTCTCTCCGGCGCCACGATAAATCTGTCCG
GCCGCCGGCGGTTCGCCCCTGCCAAGAGACGGCAATGGCTCGCGGCCAGATCACACAGCCCCTCCTCTTCCTCCTGCTTC
TATCGACCGCGCTCCCGTCTCTGGCTCAGCAGAGCAACAGCACGGGCCACACCCGTTCGTCCAGAACCGCCGGCGGGTTC
TCGCCGACCACCGTCGTCGTGCTCGTCGTCCTCATCGCGGCCTTCGTCGTCCTCACCCTCTTTTCGATCTACATCAACCG
CTGCACCGGCGGGCACCCCGTCCCTCGCCGGCCGTACCGTAGCACGGTCCCGGATCAGCCCGTCGATGCCGCCGCCCAAT
CGGATCGCTGCCGCCCCCGCGGCATCGACAGGGGGGTCGTGGAGGCCTTCCCGACGGCCGTCTACGGCGACGTGAAGGCG
CACATGGCGACCACCAAGTCGGGCCCGCTCGAGTGCGCCGTCTGCCTCACCGAGTTCGAGGACTGCGACGAGCTCCGGGT
CCTCCCGGCGTGCTGCCACGTCTTCCACCCGGAGTGCATCGACCCGTGGCTCGCCGGCGCGGTCACCTGCCCGCTCTGCC
GGGCCGACCTCACCGAGCCCCCCGCGATCCCGGCCGGCGCCGAGAGCCGCGGCTACCTGACGGAGACGGCCGTGCAGGAG
GAGCCGGAGGAGCTCGACGAGGAGTGCTCAGTGGTCTCTTTCACGGCTGAATCTCTCACCAGTTTCAGTACAGTATGGAG
GCACGAGTTCACGGGCGCGGAGTACAACCACTACCGCAGAACGCAGTCGGCCATGGATGCGCCGGACCGGCACACTCTCA
GGCTGCCAGAGCACGTCATGAAGGAGCTCGCCGCCGTCCGGAGGCACCGGCGGGCGGCTAGCCTCGCCGCAGAGTATCCG
GACACCGCGGATCAGAGGACGCCGGGGTGGCTGACCTCGTTCCTGCGGTCCATGTCATGGCAGCGGCAGAGCCGCGGGGA
CTCGGACGCCGGGGAGGAACACGGCGGCAGCAAACGGATTCATCCCGTGTCCGGAGCGCCGGTTGAAAGACCGAGCGGGT
CGGGGTCCGGCGGGGACGAGAAGAAAGAGAGCTCCGACGTTGACGCGTTAAACCGGGTTTGACCTCTTCGTTCGTTCTTG
TGTGTAATCTTCGTCTGAGTTCCTTATGCAAATAGAATTTTTATAGACCT--------------------------CCAT
GGCTTGCGATCACGTTGTTTCTTTCTCTCTTTGAATTTGGAAGGAAGAAGATCTCCTTGGATTCATGCACCTGCTGCCGT
AGACAGAAGTTTTCAGATTATGCATTACATCGTCCTGAATTAATTGTGCAATTAGTTCTGCTACAGAAATTACCGCGTTT
ACTTATGCGACTTATGG-CAAGGAGTTAATTACTTCCTATGTTACCTGGTGGCCCTTGATTGCACTTCCCTGATTGTCAA
CGACGCTTCCACTAAGA---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------------------S-----------------------------------------------------------
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---S--SS---------S--SSSSSSS-SSSSSSSSSSS----------------------------------------S
-------------------------------------------S--------------------S--------S----S-
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-------------------------
--------------------------------------------S-----------------------------------
----------------------------------------------------------------------S---------
S----------------------S-----S-------S-------S----------------------------------
----S---------S--------S---S----S-----------------------------------------------
--------------------------------------------------------S-----------------------
----------------------------S----S------------------------S---------------------
S----S---------------------S----------------------------------------------------
------------------S----------------S-----------S---S----------------------------
----------------------------------------------------------S-----------S---------
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---------------------------------S----------------------------------------------
-----------------S--------------------------------------------------------------
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----------------------------------------------------S---------------------------
--------------------------------------------------------S-----------------------
------------------------------------------------------S--------------------S----
----------------------S---------------------------------------------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS----
---------------------------------------------S---------S------------------------
--------------------------------S---S----------------------------SS-------------
-----------------S----------------------------------------------------S--S------
-S------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_737
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-----------------------------------------------------------------------------TCA
AATCCTGGTGCTCGCAT---------------------------------------------------------------
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>reverse_2711
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----------------------------------------------------------------------CGACTGTCAA
CCACGCTTTC----------------------------------------------------------------------
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