>input_sequence_61645
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-----------------------------------------------------------GCT-CCCCCCGCACACGGCAC
CCGG----GGAGCGGAGCCATGGCGGATCACAGCGACGGCCCGGCTGTCGGGAACCCTCGAGAAGATCCAACTGCGTCAG
AAGACGAGGAGG------AGGAGGAGGAGGAGGGGGAGGGGTTCACCTTCGCGGCGGCCGCGCGTGTGGGCGACGGGTGC
GCGATCGGGCCCGTGTACCTGGTCTTCGGCCGCCCGCGTTCGCCGGCGGAGCAGGAGGTGGAGGAGGAGGATGCCGGCAC
GGCCACCGTGCGGGTGCCGCTGAGGCAGCTTCTCCTGGAGGAGCGGGGGTCTTCCTCCTCGTCGCCAGGGAAACGAGCGG
ACGAAGAAGAAGAAGACGACGACGAGCTGGACGGGGTGCCGGCGGAGACGTACTGCCTGTGGTCGCCCGGGACC------
TCGCCGTCTCCGTCCCCGTCGCCGTCGCGGTGCCAGAAGAGCGGGTCGACCGGGTCGGTCCTGCGGTGGCGCCAGCGGCT
GCAGGTGGGCCGGAGCCACAGCGACGGCAAGGAGAAGTTCGTGTTCCTGCAGGCCCAACAGGACGCCGCCGGCTCCCCCG
GCCGCAGGGGAGGGACGGGGACCGGCGAGTCGCGCGGCCGGGGAGGAGTCCACGGCTGGAGCCACCGCGGCAGAGGCGGC
AGCGGCAGGGGGAGCCCCGGGCGCAGGGCGTCGACGTTCCTCCCGTACAAGCAGGATCTCCTCGGGCTCTTCGCCAACGC
CGGCGCCTTCCGCCGGAGCTACCACCCCTTCT----AACCAACCAACCAACGTCAGCCGTCAGCGTCGATCCATCTTCAC
GCCGATCGGGTGGTTGCCCTGCA------TTTTTTTTCTTCTTTCTTTCTTTCAGATTGTGATCCCTTATCAGTACACGG
CGTGTAGAATTTCTTGGGTTCTTTTCGTACATATACAGTGAC---AGTAGCTG-GTAGATCAGATCAAATCCAACATTC-
---TAGTTTGTACAGCAATTTCTTCAGTTGCAAATTGAGTTGCGGTGACAAGAAATTCTTTGCAGTCAAGCAAACATTCC
CAAGCACATCAAATCAACGAAGGAAATTAAGTGTGCACGACCCA------------------------------------
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>chr1D_1_TraesCS1D01G415200
ATTGGGGCCCACTATAGATAAGTTGTCTGAACTTTTTGTGGTGTAATAATGAATGTTGACTGTTTGAACTGCCCGATTTA
AACTCAAGGGCCCCCGTATGTTCTTCCTCCTCTGGCTTTCCTTCCCCCCGCCTGATCAAACCACATGTTGCTGGCACTAG
TGTTAGCGTCGATGGCGCTCTGACACGCGCCTTGCCACCCCTTCATGCCTTCTCAGTCATGCCGCCTTCCGTATAAGCCC
CTGTGACCCTAGCCTTCCCCATAAGCCCTCACAGTCCTTATTCTCTAGCGTCGGCAGCCCACCCCACACCCTGAGACCTC
CCCGGCTTCGAGTCGCTACTAGCTCAGCCTTGCCAGTGAGCCTGCGTTTCATTGCCTTTTGTTGCGGTGCCCCCGGCTTC
ACCTTGCCTTCCTTTCTTTTTCCCAGAAATCGATTTAAGACAATTAATTTATTGTCCGAACAATTTACCAATGGCAAACG
TGTTTTTTTTTTTGGATGTTTGGTAGTACTCCCCTGTCCGACTATTAGACACATTCATCTTTATCCATTTATCTGACAAA
TATTTTCGGATGGAGGAAGTATTTTTTTAATGTGAATTATAATGTTTCAGACTTTCAGTAGTGCAGGAAGGAGTGACAGG
GGCTCTCGAGAAAAGATG---------GAGAAGCTGCACATGGATGGATCGGATCAGATCCAGCAACGCTGTAGTCCACT
CCAGTGGGATTCTCGCCGCC--------GCCGCCGCCGCTGCTGCTGTCCAGCTTGCATTCTTCCGTTCCGTTG--GCTC
AACGGCCGGCTCCCATCACCGGCCACGCGTCGCGCATGGGCCGGGCCCACCCACCAACCGAACAACCAGCTCCCTCGAAT
CACTGACGAGGCAACAACGGCAGTGCGAGCCCGGGCCCACCCGTCGGCCACGCAGCGGGCTTCGCGGGCCCGCGCCTTGC
GTGCCAGGCGCAGCTCGCAGCTGCAACCGCCAGCGTCTCCCGGCCCTTTTATCCCCGCCGCT-CCCCCCGCACACGGCAC
CCGG----GGAGCGGAGCCATGGCGGATCACAGCGACGGCCCGGCTGTCGGGAACCCTCGAGAAGATCCAACTGCGTCAG
AAGACGAGGAGG------AGGAGGAGGAGGAGGGGGAGGGGTTCACCTTCGCGGCGGCCGCGCGTGTGGGCGACGGGTGC
GCGATCGGGCCCGTGTACCTGGTCTTCGGCCGCCCGCGTTCGCCGGCGGAGCAGGAGGTGGAGGAGGAGGATGCCGGCAC
GGCCACCGTGCGGGTGCCGCTGAGGCAGCTTCTCCTGGAGGAGCGGGGGTCTTCCTCCTCGTCGCCAGGGAAACGAGCGG
ACGAAGAAGAAGAAGACGACGACGAGCTGGACGGGGTGCCGGCGGAGACGTACTGCCTGTGGTCGCCCGGGACC------
TCGCCGTCTCCGTCCCCGTCGCCGTCGCGGTGCCAGAAGAGCGGGTCGACCGGGTCGGTCCTGCGGTGGCGCCAGCGGCT
GCAGGTGGGCCGGAGCCACAGCGACGGCAAGGAGAAGTTCGTGTTCCTGCAGGCCCAACAGGACGCCGCCGGCTCCCCCG
GCCGCAGGGGAGGGACGGGGACCGGCGAGTCGCGCGGCCGGGGAGGAGTCCACGGCTGGAGCCACCGCGGCAGAGGCGGC
AGCGGCAGGGGGAGCCCCGGGCGCAGGGCGTCGACGTTCCTCCCGTACAAGCAGGATCTCCTCGGGCTCTTCGCCAACGC
CGGCGCCTTCCGCCGGAGCTACCACCCCTTCT----AACCAACCAACCAACGTCAGCCGTCAGCGTCGATCCATCTTCAC
GCCGATCGGGTGGTTGCCCTGCA------TTTTTTTTCTTCTTTCTTTCTTTCAGATTGTGATCCCTTATCAGTACACGG
CGTGTAGAATTTCTTGGGTTCTTTTCGTACATATACAGTGAC---AGTAGCTG-GTAGATCAGATCAAATCCAACATTC-
---TAGTTTGTACAGCAATTTCTTCAGTTGCAAATTGAGTTGCGGTGACAAGAAATTCTTTGCAGTCAAGCAAACATTCC
CAAGCACATCAAATCAACGAAGGAAATTAAGTGTGCACGACCCACCATGTCCCATGATTTGTCTCTAAATTATGCATAAG
CCAAAGCCTTAATTAGGAGTAGTA-GTATTAGTTAAGCAACGCAACGAGCAGCCGTT---GCCGCGTACGAGCTGTC---
GAACGAATATGATCGTCAGACATCAGGCCGGAGGTTCAGGC---------------GTCCGCGTCGATCGATCTTATCGC
CGGTCACCTACTCTAGCTAGCCATCTTTGGC--TCCTTCCCCAAACTGTACACTTCGGATTAGTGGAGCTAATTGGCCAG
CTCGCTCCCTGGG-TTAGGCTAGCTCGTAGCTGGTCACGATCTTGCTCAGTCTGGACTCTGAACGTACGTAAGTG---GC
CGGAGCCACACAAATGGAAACCGGATAATTATCGTCTGCCATCTAATTAAACTTTGCAGTTTTGAGGGATGGCTAG----
--CTTGACCGGTAGCTGGCCAACGCAGCTGGTGCAATGAGAGTCCATTTGGAACGCCGTCGTTCATCAGAGAGG-AAATT
CGTCCCAATTATACAGAGTTCTCTATAAAATCCCAATATTTATGGGGAAACCGGCTGAATTGCTATAATATTTTAAAACT
-TTGCTTGGTTGTGTCTCCAATCACAGTAA-AAGTCCTTTTGGTATACTTTGACAAACTACATCAACCTTCACTTACCCG
CCAAAAGAAAAACGACCATAGCTTCACCAACCTTCCATTCCACAAGGACAACGAAGAACTGGAAAAGTTCTTCAAGAACA
ACGCCTTAAGGAAACGACCGTCAAATTCCACTGTCACCGGATCCAATCATTAAAGGCTATAATTTAGATTTCCATTATAG
ATAATAAGTTTGAGCATATCCGAGCAATGCCCTCAACAAAGTAATGACACAAATAACATCGTCATTACCAGGTATAAACC
AACTTGAGTAAGACCTAGAGTTTTCACCCCAGAGCTCGAGGTTGACTATTCATGAAGCACCACCAAATCGAAGTCATTCA
TGAGTTGTTGCCATCACTTTCCGCGATCCCAACTGCTAAAT
>chr1A_625
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----------------------------------------------------------------AGGAGTGAGTGACAGG
GGCTCTCGAGAAAAGTTCAAAAGAGGAGAAAAGCCGCACATGGATGGATCGGATCAGATCCAGCAACGCTGTAGTCCACT
CCACTGGGATTCTCGCCGCC--------GCC---------GCTGCTGTCCAGCTTGCATTCTCCCGTTCCGTTGAGGCTC
AACGGCCGGCTCCCATCACCGGCCACGTGTCGCGCATGGGCCCGGCCCACCCACCAACCGAACAACCAGCTCCCTC-AAT
CACTGACGAGGCAACAACGGCAGTGCGTGTCCGGGCCCACCCGTCGGCCACGGAGAGGGCCTCGATGGCCCACGCCTTGC
GTGCCAGGCGCAGCTCGCAGCGGCAACCGCCCGCGTCTCCCGGCCCTTTTATCCCCGCCGCTCCCCCCCGCACACGGCAC
CGGGGAACGGAGCGGAGCCATGGCGGATCACAGCGACGGCCCGGCTGTCGACATTGTTCGAGAAGATCCAGACGAG---G
AGGAGGAGGAGG------AGGAGGAGGAGGAGGGGGAGGGGTTCACGTTCGCGGCGGCCGCGCGTGTGGGCGACGGGTGC
GCGATCGGGCCCGTGTACCTGGTCTTCGGCCGCCCGCGTTCGCCGGCGGAGGAGGAGGTG---GAGGAGGATGCCGGCAC
GGCGACCGTGCGGGTGCCGCTGAGGCAGCTCCTCCTGGAGGAGCGAGGGTC---CTCGTCGTCGTCGGGGAAACGGCCGG
ACGACGACGGAGGAGAAGACGACGAGCTCGACGGGGTGCCGGTGGAGACCTACTGCCTGTGGTCGCCCGGGACC------
TCGCCGTCCCCGTCCCCGTCGCCGTCGCGGTGCCAGAAGAGCGGGTCGACCGGGTCGGTCCTGCGGTGGCGCCAGCGGCT
GCAGGTGGGGCGGAGCCAAAGCGACGGCAAGGAGAAGTTCGTGTTCCTGCAGGCACAACAGGACGCCGCCGGCTCCCCCG
GCAGCAGGGGAGGGACGGGGACCGGCGAGCCGCGCGGCCGGGGAGGAGTCCACGGCTGGAGCCACCGCGGCAGAGGGGGC
AGCGGCAGGGGGAGCCCTGGGCGCAGGGCGTCGACGTTCCTCCCGTACAAGCAGGACCTCCTCGGGCTCTTTGCCAACGC
CGGCGCCTTCCGCCGGAGCTACCACCCCTTCTG----ACCAACTGACCAACGTCAGCCGTCAGCGTGCATCGATCTCT-C
GCCGATCGGGTGGTTGCCCTGCA------TTCTTTCT-TTCTTTCTTTCTTTCAGATTGTGATCCCTGATGAGTACACGG
CGTGTAGAATTTCTTGGGTTCTTTTCGTACATATACAGTGACAGTAGCTGGTACGTAGATCAGATCAAATCCAACATTGT
GAGTATTTTGTACAGCAATTTCTTCAGTTGCAAATTGAGTTGCGGTGACAAGAAATTCTTTGCAGTTAAGCAAACGTTCC
CAAGA-----------------------AATTGTTCACGGCACATCATCTCCCATGATTTGTGTCTAAATTACGCATGAG
CCAAAGTCTTAATTAGGAGTAGTACGTATTAGGTAAGCAGCGCAACGAGCTGCAGTTGCCGCCGCGTACGAGCTGTCCAT
GAACGAATACGGTCGTG-------AGGCAGGAGGTTCAGGC---------------GAGCGCGTCGATCGACCTTCTCGG
TGCTCACCTACTCAGACTGGCGCTATCGATGCTTCCTTCCCCAAACTTTACTCTTCGGATTAGTGGAGCTAATTGGGCA-
---GCTCGCTGGG-TTAGGCTAGCTCGTAGCTGGTCACGATCGTGCTCAGCCTGGGCCCTGAACGTACGTAAGTGGCCGC
CGGAGCCACACAAATGGAAACCGGATAATTATCCTCTGCCATCTAATTAAACTTTGCAGTTTTGAGACATGGCTAG----
--CTAGAACGGTAGCTGGCCAACGCAGCTGGTGCAATGAGAGTCCATTTGGAACGCCGTCGTTCATCACAGAGGGAAAGT
TGTCTCAATTATGCGGAGTTCTCTATAAAATCCCCATATTTATGGGAAAACTGGCTAAATTGCTATAAAATTTTAAAAAA
ATTGCTTCGTTGTGTCTCCAATCACAGTGGGAAGTCATTTTGGTATA---------------------------------
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>chr1B_651
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------------------AAAAGACGAGAGAAGCTGCACATGGATGGATCGGATCAGATCCAGCGACGCTGTAGTCCACT
CCACTGGGATTCTCGCCCCGCCGCCGCGGCC---------GCTGCTGTCCAGCTTGCATTCTCCCGTTCCGTTG--GCTC
AACGGCCGGCTCCCATCAACGGCCACGTGTCGAGCGTGGGCCTGGCCCACCCACCAACCGAACAACCAGCTCTCTCGAAT
CACTGACGAGGCAGCAGCGGCAGTGCGAATCCGGGCCCACCCGTCGGCCACGCAGCGGGCTTCGCGGGCCCACGCCTTGC
GTGCCAGGCGCAGCTCGCAGCTGCAACTGCCCGCGTCTCCCGGCCCTTTTATCCC--------------GCACACGGCAC
CCGG----GGAGCGGAGCCATGGCGGATCACAGCGACGGCC-GGCTGTCGAGATCCCTCGAGAAGATCCCGTTGCGTCAG
AAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGGTTCACCTTCGCGGCGGCGACGCGTGTGGGCGACGGGTGC
GCGATCGGGCCCGTGTACCTGGTCTTCGGCCGCCCGCGTTCGCCGGCGGAGCAGGAGGTGGAGGAGGAGGATGCCGGCAC
GGCCACCGTGCGGGTGCCGCTGAGGCAGCTTCTCCTCGAGGAGCGGGGGTCATCGTCGTCGTCGTCGGGGAAACGGCCGG
ACGACGACGA---AGAAGAAGACGAGCTGGACGGGGTGCCGGCGGAGACCTACTGCCTGTGGTCGCCCGGGACCACGCCG
TCGCCGTCTCCGTCCCCGTCGCCGTCGCGGTGCCAGAAGAGCGGGTCGACCGGGTCGGTCCTGCGGTGGCGCCAGCGGCT
GCAGGTGGGGCGGAGCCACAGCGACGGCAAGGAGAAGTTCGTGTTCCTGCAGCCACAGCAGGACGCCGCCGGCTCCCCGG
GCAGCAGGGGAGGGACGGGGACCGGCGAGCCGCGCGGCCGCGGAGGAGTCCACGGCTGGAGCCACCGCGGCAGAGGCGGG
AGCGGCAGGGGAAGCCCCGGGCGCAGGGCGTCGACGTTCCTCCCGTACAAGCAGGACCTCCTCGGGCTCTTCGCCAACGC
CGGCGCATTCCGCCGGAGCTACCACCCCTTCTAACCAACCAACCAACCAACGTCAGCCGTCAGCGTCGACCCATCTTCAC
GCCGATCGGGTGGTTGCCCTGCATTTTCGTTCTTTCT-TTCTTTCTTTCTTTCAGATTGTGATCCCTGATCAGTACGCGG
CGTGTAGAATTTCTTGGCTTCTTTTCGTACATATACAGTGACAGTAGCAGCTG-GCAGATCAGATTAAATCCAACATTGT
GAGTAGTTTGTGCAGCAATTTCTTCACTTGCAAATTTAGTTCCGGTGACAATAAATT-----------------------
-----------------------------------------------------------------------ATGCATGCG
CCAAAGTCTTAATTAGGAGTAGTACGTATTAGCC--------------------GTTGCCGCCGCGTACGAGCTGTCCAT
GAACGAATACGATCGTCAGACATCTGGCCGGAGGTTCAGGCGAGCGCGCGGTCGCTGTCGGCGTCGATCGACCTTATCGC
CGCTCACCTACTCTGCCTAGCCATCT--------------CCAAACTTTACTCTTCGGATTAGTGGAGCTAATTGGGCA-
---GCTCGCTGGGTTTAGGCTAGCTCGTAGCTGGTCACGATCTTGCTCAGTCTGGGCTCTGAACGTACGTAAGTG---GC
CGGAGCCACACAAATGGAAACCGGTTAATTATCGTCTGACATCTAATTAAACTTTGCAGTTTTGAGAGATGGCCAGCTAG
AACTAGAACGGTAGCTGGCCAACGCAGCTGACGCAATGAGAGTCCATTTGGAACGCCATCGTTCATCAGAGAGGGAAATT
CGTCCCAATTATACGGAGTTCTCTGTAAAATCCCAATATTTATGGGAAAACCGGCTGAATTGCTAGAAATTTTTAAAACT
-TTGCGTGGGTGTCTC----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS----------
---------------S-S--------------------------------------------------------------
---S---------------------------SSSSSSSSS----------------------S-----------------
---------------------------S--------------S-------------------------------------
-----------------------------S-----------------------------------------S--------
-------------------------------S------------------------------------------------
--------------------------------------------------S--S----------------SS--------
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---------------------------------------------------S-----S------S-S--------SS---
----S--S----S---S--------------------------------S------------------------------
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---------S--------------------------------------------S-------------------------
--S--------------------------S--------------------------------------------------
--------------------------------------------------------S-----------------------
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-------------------------------S---S-S-----------------------------S------------
-----------------------------------------------S------------------------------S-
------------------------------------------------------------------S--------S----
----SSSSSSSSSSSSSSSSSSSSSSSS--S---S----S-S--S---S-------------S--------------S--
------S-------------------------S------S----------S--S--------------------------
---------S-------------------------------------------------------------S--------
--S-----------SS----------SSSSS----------------S---S------------------------S--S
SSS----S-----------------------------------------------S------------------------
------------------------------------------------------------------S-------------
----S--S------------------------------------------------------------------------
--------------S-------------------------------S---------------------S-----------
----------------------------SS------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_269
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---------TAGCCTTCCCCATAAGCCCT---------------------------------------------------
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>reverse_1368
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-------AGAAGAAGACGACGACGAGC-----------------------------------------------------
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>forward_520
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--------------------TGGTAGTACTCCCCTGTCCG----------------------------------------
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>reverse_2347
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--------------------------TTGGCTCCTTCCCCAAACTG----------------------------------
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