>input_sequence_61619
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--------------------------------------------------ATGCCGCCGGCCATCGACGTTGCACGCGAG
CACAGGATACCGTTCGCCGTCTTCTGGGTCCAGCCGGCGACAACTCTCGCCACATACTACCACTACTTCCACGGCCACGC
GGAGATGATCAACTCCCGTGCCGCCGACACGGCATGCGTGGTTAGCCTACCAGGTCTGCAC---CCTCTTAGCATCCGCG
AGATGCCATCTTTAATCATTGACAAGGACGAGGCCTCCAAGATGTATCTCCGA------GGGTTCGGTGAACTATTCGAG
CAGATCGAGCAGGAC------AAGGCCATGGTCCTGGTGAACACGTGCGACG-----CCCTAGAGCTAGAGGCGACGTCG
CTAAAGGCATTACAGTCACACCTGGATGTCATCGCCGTGGGCCCGACGGTTCCTCCTGCCGGTGCCGGAGAAGAAGCG--
-ATCCATCTGTTCCGGCGA---------GACGAGAAGAAGTACATGGAATGGCTGGACTCGCAGCCGGCCAA--------
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---------------------------------------------------GTCGGTGGTGTACGTCTCCTTTGGGAGCT
TGGGGACGTACAGCCAGCGGCAGGCGGAGGAGATCCTGCGTGGCCTGCGGTGCTGCGCGCGGGCCTACCTTTGGGTGGTG
CGCCGTGAAGGGCGCATGGAGGAGGTGGAGCGCCTCATCATGGGGACGGGCGCCGAGGACGACGAGAGCACGGGGATGGT
GGTGGAGTGGTGCGATCAGCTGCGGGTGCTGGCGCATCCCTCGGTGGCGTGCTTCGTCACGCACTGCGGGTGGAACTCGA
CGCTGGAGGCCGTGGCGTCCGGTGTGCCACCCGTCGCGGTGCCGGGCTGGTCGGACCAGTCGTTGAACGCGCATCTGGT-
--GGAGGAGTGGGGCGTCGGCGTCCGGGCGGAGCGCGACGCGGAGGGACTGCTGCCCGGCGTGGAGCTGGCGAGGTGCGT
GGAGCTGGTGATGGGTGACGGCGGGACGGCCGCCAAGGTCAAGACCAATGCCGCTGCTTACCAGGAGAAGGCGCGACAGG
CGATGGCCGC----GGACGGCCCGTCGGAGAGGAACCTTGGGAGCTTCGTCAACAGGGTGCGACATCTAGTTGCTGCCGT
GGAGAAAAACCATGCATGA-------------------------------------------------------------
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>chr5B_1_TraesCS5B01G021300
GATACATTTCTTGGTATTTTTTCATAAATTTCACATGGGGCCGGGGTAGATTGGGCACGCGGGTCTGATATCCAAATATT
TCAGGTTTTTCTGAATTCTCCTGGTATTTTTTGAATTTGATATTCATATGGGGGTTCGAGCACCGAGGAGCTTATGTGCA
TTTTTCGGCTATAAGCAATGCTATTGTACTTGCTCTTTTCGATAAAGGGCGGATTTTATTTATTCAAAATAAAGCTTCAA
GAAGATGCAAACATAATGAGTAGACATCCAGTTTCTGCATAGTTAGGATGCACACATCCAACAGTAACGCATACATCAGA
TCCAACCACGGAAGCTCGGATTCTACGCTTTAATTTCACCTGGAACACAAATATGAGCATATCCGATCAACGCCTTGAAC
AAGATAACGATGCAATTCTACTTGCTCTAATTTGCTATTTGTTGCCCATTGTAATCTTCCTTTCTCTTCACCCCATGTAA
CTCCCTGAATGTTGTGATCTCATCCTGGCTAATATAGGTTCAGGCTGTCTCCCGTCAAAAAGGAAAATACACAGAGAGAG
AGAGAGAGAAAGAGAGAGAGAGAGCATCTCTTAACAACACATAGCCCCT------GATGGTGATGGCCAAGGAGATATGC
CAAGGGCGCTATCGCAACAACTATGGCGATGGCCACATCCATTTCCTCGTGGCGGTCTACAGCATGCAGGGCCACCTCAA
CCCGGCGCGTTGCCTTGCCCGCCGTCTCGCCGGCATCGGCGGCGCCACCGTGACTCTGTCGATGCCAATCTTCGGCCACC
GCCGCACACTTGCTTCCGACG----AGGAGGTCAACGACGGTGCCATCTCCTACATCCCCTTCTCCGACGGCAAGGACGA
CGGCAGCTGGGCCAAGGACTGGGAGGAGAGGACGTGGCGCCGCAGAGCAAGCGCCGAGAGCCTCTCTGCCGTGGTCGGCC
GTCTCGCCGCCGAAGGCCGGCCGGTCACGTGCATGGTGTCCACGCTCAACATGCCGCCGGCCATCGACGTTGCACGCGAG
CACAGGATACCGTTCGCCGTCTTCTGGGTCCAGCCGGCGACAACTCTCGCCACATACTACCACTACTTCCACGGCCACGC
GGAGATGATCAACTCCCGTGCCGCCGACACGGCATGCGTGGTTAGCCTACCAGGTCTGCAC---CCTCTTAGCATCCGCG
AGATGCCATCTTTAATCATTGACAAGGACGAGGCCTCCAAGATGTATCTCCGA------GGGTTCGGTGAACTATTCGAG
CAGATCGAGCAGGAC------AAGGCCATGGTCCTGGTGAACACGTGCGACG-----CCCTAGAGCTAGAGGCGACGTCG
CTAAAGGCATTACAGTCACACCTGGATGTCATCGCCGTGGGCCCGACGGTTCCTCCTGCCGGTGCCGGAGAAGAAGCG--
-ATCCATCTGTTCCGGCGA---------GACGAGAAGAAGTACATGGAATGGCTGGACTCGCAGCCGGCCAA--------
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---------------------------------------------------GTCGGTGGTGTACGTCTCCTTTGGGAGCT
TGGGGACGTACAGCCAGCGGCAGGCGGAGGAGATCCTGCGTGGCCTGCGGTGCTGCGCGCGGGCCTACCTTTGGGTGGTG
CGCCGTGAAGGGCGCATGGAGGAGGTGGAGCGCCTCATCATGGGGACGGGCGCCGAGGACGACGAGAGCACGGGGATGGT
GGTGGAGTGGTGCGATCAGCTGCGGGTGCTGGCGCATCCCTCGGTGGCGTGCTTCGTCACGCACTGCGGGTGGAACTCGA
CGCTGGAGGCCGTGGCGTCCGGTGTGCCACCCGTCGCGGTGCCGGGCTGGTCGGACCAGTCGTTGAACGCGCATCTGGT-
--GGAGGAGTGGGGCGTCGGCGTCCGGGCGGAGCGCGACGCGGAGGGACTGCTGCCCGGCGTGGAGCTGGCGAGGTGCGT
GGAGCTGGTGATGGGTGACGGCGGGACGGCCGCCAAGGTCAAGACCAATGCCGCTGCTTACCAGGAGAAGGCGCGACAGG
CGATGGCCGC----GGACGGCCCGTCGGAGAGGAACCTTGGGAGCTTCGTCAACAGGGTGCGACATCTAGTTGCTGCCGT
GGAGAAAAACCATGCATGAATCGTGACAATGATCGATCCATTCCACCGCTTCCATAGCACA----CATACAAGGAATGAA
CATGAAGAATCATCGCCCGGCCTTTCAAGTTTAATTTTAATTGTTGTAATCTGTGAATCTTTCTCGTTGGTCCTTGTCGC
GGAAT-----------TTGAGAATTTGATTTGCCGAGACCCGCTTGAGAATTTGATTTGAACAAGGTCCTTTCCAAAAAT
AGCTGCACGCATTTCTGTTTTTCAAAAAGTTCCAAAGGACAGCGGGTGCTTTTAACTTGCTCCTTTTTTTTTGGAGATTG
AGACAAGGCCCTTCAAGATGAAGTTCCAACAGCTCACGGAGATCGGTGCAAAGCCGAGCTTGATGGAGGCCTAATAATGC
AATCCGAACCTCCTTGGACTTGGCA-------------------------------------------------------
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---------------------------------AGATGCAAAGATAACGTGAGCTTGACTTTGGGAAGTGGTACATATGA
ATTCACTTTGAAAAACACATTTTTAAATGATAAAAAAAATCTGAAAAAGGTTGCACGGGTACATCTCCATGTTCTATGTG
AGTGCATAATTTCACGGAAAAATAACTTTTTTTTGTGTCCCGTATAGAAGAGACAAAAAATTGTGTCGTGAAACACTATT
TAGAAACAGTATAATTTGTCTTTT-TTCGGAGACAAAACAAAAATACG-TTTTTTTATAAAACTTTGTACCGCGCACACA
CGTTTGCGAACATGTATATTTGAAGTTTTCTTTTGAATATTTTGACATTTTAAAACGTACTTAAGATGCATTTTTTGAAA
AGCGGGTGCACTTGCCCATGTGTGCAGGACGTGCCCTCCCGCTTGACTTTCCTCTAGACAGCAGCTCAGGCAGGAGCCAG
CCTCATGGTGAGA----TAATGATTTTATAGCGATATTTGATTTTTTGACCGAAACTGTAGGAGATGCTCCTACAACAAA
TTTTAATTAAAGGAAATAATGTTAGTACAAAATAGGTACACAATACTAATAAGGAAAACAGAAAACAAGGAAACAACTAG
GGAAGGGC
>chr1B_571
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----------AGAGAGAGAGAGAGCATCTCTTAACAACACATAGCCCCTTTTGCGGATGGTGATGGCCAAGGTGATATGC
CAAGGCCGCCATCGCAACAACTGCAGCGGTGACCACATCCATTTCCTCGTGGCGGTCTACAGCATGCAGGGCCACCTCAA
GCCGGCGCGTTGCCTTGCCCGCCGTCTCGCTGGCATCGGCGGCGCCACCATGACTCTGTCGATGCCAATCTTCGGCCACC
GCCGCACACTTGCTTCTGACGAGTCAGGAGGTCAACGACGGTGCCATCTCCTACATCCCCTTCTCCGACGGCAAGGACGA
CGGCAGCTGGGCCAAGGACTGGGAGAAGAGGACGTGGCGCCGCAGAGCAAGCGCCGAGAGCCTCTCTGGCGTGGTCGGCC
GTCTCGCCGCCGAAGGCCGGCCGGTCACGTGCATGGTGTTCATGTTCAACATGCCGCCGGCCATCGACGTTGCGCACGAG
CACATGATACCGTTTGCCGTCTTCTAGGTCCAGCCGGCGACAACTCTGGCCACATACTACCACTACTTCCACGGGCACAC
GGAGATGATCAACTCCCGTGCCGCCGACACGGCATGCGTGGTTAGCCTACCAGGTCTGCAC---CCTCTTAGCATCCACG
AGATGCCATCTTTAATCATTGAGAAGGACAAGGCCTCCAAGATGTATCTCCGA------GGGTTCGGTGAACTATTCTAG
CAGATCGAGCAGGAC------AAGGCCATGGTCCTGGTGAACACGTGCGACACCGGCCCCTAGAGCTAGAGGCGATGTCG
CTCAAGGCATTACAGTCACACCTGGATGTCATCACCGTGGGCTCGATGGTTCCTCCTGCCGGTGCCGGAGAAGAAGCAGC
CATCCATCTGTTCCGGCGA---------GACGAGAAGAAGTACATGGAATGGCTGGACTCGCAGCCGACCAA--------
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---------------------------------------------------GTCGGTGGTGT------------------
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--------------------------------------------------GCTTAGTCACGCACTGCGGCTGGAACTTGA
CGCTGGAGGCCGTGGCGTCCGGTGTGCCAGCCGTCGCGGTGTTGGGCTAGTCGGACCAGTCGTTGAATGCGCATCTGGT-
--GGAGGAGTGGGGCGTCGGCGTCCGGGCGGAGCGCGACGCGGAGGGACTGCTACCCGGCGTGGAGCTGGCGAGGTGCGT
GGAGCTAGTGATGGGTGACGGCGGGACGGCCGCCAAGGTCAAGACCAATGATGTTGCTTACCAGGAGAAGGCGCGACAGG
CGATGGCCGCGCACGGACGGCCCGTCGGAGAGGAACCTTGGGAGCTTCGTCAATAGGGTGCGACATCTAGTTGCTGCCGT
GGAGAAAAACCATGCATGAATCGTGACAATGATCGATCCATTCCACCGCTTCCATAGCACACATGCATACAAGGAATGAA
CATGAAGAATCATCGCCCGGCCTTTCAAGTTTAATTTTAA----------------------------------------
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>chr5A_827
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------------------------------------GACGGTGCCATCTCTTGCGTTGCCTTCTCCGACGGCGTCGACGA
CGGCACCACCGCCAGGGGCCCCGAGGAGAGGGCGCGCCGCCGCCGCGCGTCCGCCGAGAGCCTCTTTGCGGTCGTCGCGC
GGCTCGCCTCCCGCGGCCGGCCCGTTACGTGCATCGTGTGCAGCATGATGCTCCCCTGGGCACTGGACGTCGCGCGGGAG
CGCGACATCCCGTTGGCCGTGTTTTGGATACAGCCGGCAACCGTCCTCGCCACCTACTACCACTACTTCCACGGCTACGG
CGAGCTCATCGCGTCCCACGCCGCCGACCCCGCGTACGAGGTGACTCTGCCCGGGCTCAGCCGGCCTCTCAGGATCCGCG
ACTTCCCGTCATTCCTCGTCGACACCACCGGAGGTGAGGTGGGCAAGGTCGTCAACGCGGTGTTCTGTGAGCTGTTCGAG
TTCATGGACGAGCAGAGGCAGAATGTCAAGGTCCTCGTGAACACTTTCGACG-----AACTGGAGCCGGCGGCGCTGGCG
GCCATGAGGGAG------CACTTGGATGTGTTCGCCGTCGGCCCCGTGGTCGGGTCGTCGGCCGAGGCGCG------G--
-ATCCATCTGTTCAACCACGCCGGTGCCGACAAGACGAGGTACATGGAGTGGCTCGGGGCGCAGCCGGAGAGGTCGGTGG
TGTACGTCTCGTTCGGCAGCATATGGACGTACAGCAAGCAGCAGATGGAGGAGATCGCGGACGGGCTGCGGCGGTGCGGA
CGGCCGTACCTGCTCGTGGTGCGCAAGGACGGGCGGCAGGAGGACGTGAGCCGCTGCCTCGAGGACGTCGTGCAGGAGAG
GAAGGGCATGGTGGTGGAGTGGTGCGACCAGCCGGAGGTCCTCTCGCACCCGTCCGTGGGGT------------------
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--------------------------------------------------GCTTCGTCACCCACTGCGGGTGGAACTCGA
CGCTGGAGGCCATGGCACTGGGTGTGGCTGTCGTCGCCGCGCCGAGCATGTTCGACCAGCCGACGAACGCGATGTTGATA
GAGGAGGAGTGGGCTGCCGGCGTTAGGGGAGAGCGCAACGGCGAGGGCATCTTCTCCGGGCCGGAGCTGGCGAGGTGCGT
TGAGCTGGTCATGGGCGACGGCGCGAGGGCCGTGGAGGTCAGGAAAAAAGTGGAGTCTCGGAAAGGGATGGCGCGGGATG
CAATGGCTCCCGGA----GGGCCGGCGGAAAGAAACCTCCGAAGCTTCGTCA----------------------------
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>chr1B_2161
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--------------------------------AATTTTAATTGTTGTAATCTATGAATCTTTCTCGTTGGTCCTTGTCAC
GGAAACATGTACTCCCTTGAGAATTTGATTTGCCGAGACCCGCTTGAGAATTTGATTTGAACAAGGTCCTTTCCAAAAAT
AGCTGCATGCATTTCTGTTTTTCAAAATGTTCCAAAGGACAGCGGGTGCTTTTAATTAACTTGCTCTTTTTTGGAGATTG
AGACAAGGCCCTTCAAGATGAAGTTCCAACAGCTCACGGAGATCGGTGCAAAGCCGAGCTTGACGGAGGCCTAATAATGC
AATCCGAACCTCATTGGACTTGAGCAGATGAAAAGCCTATGATGCGTGTTATTCCGGTCGTGGACCGAACATACTATTTT
CAGTTTGTTAAGTTGTAATCGTCGAAACCTGGTGCCTTGATGGCTTTATTAATTTAAAGCCGGACGCTTCTAGCGTCTAC
GTTCCAAAAAAAAAAACCTTATTGGACTTGGGCAGATGAAAAGAAAACGTGAGCTTGACTTTGGGAAGTGGTACATATGA
ATCCATTTTGAAAAACACATTTTTAAATGATAA-AAAAAACTGAAAAAGGTTGCACAGGTACATCTTCATGTTCTATGTG
AGTGCATAATTTCACGGAAAAGTAACT-TTTTTTGTGTCCCGTACAGAAGAGACAAAAAATTGTGTCGTGAAACACTTTT
TAGAAACAGTAAAACTTGTCTTTTCTTCGGAGACAAAACAAAAAGATGTTTTTTTTATAAAACTTTGTACCGCGCACACA
CGTTTGCAAACATGTATATGTGAAGTTTTCTTTTGAATATTTTGACATTTTAAAACGTACTTAAGATGCATTTTTTGAAA
AGTGGGTGCACATGCCCATGTGTGCAGGACGTGCCCTCTCGCTTGACTTTTCTCTAGACAGCAGCTCAGGCAGGAGCCAG
CCTCATGGTGAGATGGGTAATGATTTTATAGCGATATTTGATTTTTTGACGGAAACTGTAGGAGATGCTCCTAGAAGAAA
TTTTA-TTAAAGGAAATAATGTTAGTACAAAATAGGTACACAATACTAATAAGGAAAACAGAAAACAAAGAAACAACTAG
GGAAGGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------------------------------------------------------------S-------
-----S---S------------SSS---S--S------------------------------------------------
S-----------------------------S------------------S------------------------------
----------------S---------------------------------------------------------------
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---------------------------------------S--S-S----------------------------S------
----S---------S-----------------------------------------------------------------
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---------------------------------------------------------------------------S----
--S-------------------------------------------S---------------------------------
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--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
-----------------------------S------------------S-------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------SS-S--------------------------
-----------------------------------------------------S--------------------------
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----------------------------------------------------S-------------------------S-
----S---------------------------------------------------------------------------
-------S-------------------S---------------------------S-SS--SSS-S--------------
---------------------------------------------------------------S----------------
------------S---------SSS-------------------------------------------------------
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--------------------------------------S-----S-----------------------------------
--S--S---------------------------S-----S----------------S---------S-------------
---------------------S-----S----------------S--------------------------------S--
-----------S--S-----------------------------S-S---------------------------------
-------S-----------S------------------------------------------------------------
--S--------S--------------------------S-----------S-----------------------------
--------------------------------------------------S----------------------S--S---
-----S--------------------------------------------------------------S-----------
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>forward_401
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-------------------------------------------------------------TCCGATCAACGCCTTGAAC
A-------------------------------------------------------------------------------
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>reverse_2211
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--------------------------------------------------CCGCTGCTTACCAGGAGAAG----------
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>forward_540
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----------------------------------------CAGGCTGTCTCCCGTCAAAA--------------------
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>reverse_2588
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---------------------------AGTTCCAAAGGACAGCGGG----------------------------------
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