>input_sequence_61617
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ATGACGTCGCCGGTGACGACGCACGCCTCGCCCTTCCTGCTCGCCCTGCTCCTGCTCCTCTCCATCCCGGTCGTCTTCCT
CCTCGGGCCGCGCCTCCTCCCGCCCAAGACGCTCCCCGCCATCCCGGACGCCGACGAGTCCGACGACCTCGCCCTCTTCC
GCCGCGCCATCCTCTCCTCTTCCTCCGCCAAGCCGGCCACCACCTCCTACTTCTTCCACCGCCGCCCTCGGCCCAAAGTC
GCCTTCCTCTTCCTCACCAACTCCGACATCGTCTTCTCGCCGCTCTGGGAGAAGTACTTCCGTGGCCACCGCAAGCTGTT
CAACCTGTATGTCCACGCCGACCCCTACTCCGTCCTAGAGCTGCCGCCCACGCCCACCTTCCGCGGCCGCTTCGTGCCAG
CCAAGGCCACGCAGCGAGCCTCCCCCACGCTCATCTCTGCCGCCCGCCGCCTCCTCGCCACCGCACTCCTGGACGACCCG
TCCAACCAGTTCTTTGCGCTGCTGTCCCAGTCCTGCATCCCGCTGCACCCGTTCCCCACCATGTACAAGACACTCCTCTC
CGACAATGCTGGCCCTCACGGCCACCACCGCAGCTTCATAGAGATAACGGACAACACCTCCATCCTTCATGATAGGTACT
ATGCCCGCGGTGATGCTGTGATGTTGCCAGAGGTGCCGTATGACCAGTTTCGTGCTGGATCGCAGTTCTTTGTGCTCACT
AGGAGGCATGCCATCATGGTTGTGAGGGACATGCGGCTCTGGAAGAAGTTTAAGCTGCCTTGTCTGGTCGAGCGCAATTA
CTCGTGCTATCCAGAGGAGCACTACTTCCCCACATTGCTGGATATGCAGGACCCTGCTGGATGCACCAAGTATAGCCTCA
CGAGGGTGAACTGGACAGATCAAGTCGAGGGCCACCCACACACGTATCATCCTGGGGAGGTGTCGGCCAACTTGATCAGG
GAGCTGAGGAAGTCAAATGCGAAATACTCATACATGTTTGCACGGAAATTTGCCCCGGAGTGCCTCGAGCCGCTGATGGA
GATTGCGGACTCAGTCATCCTACGTGACTAG-------------------------------------------------
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>chr5A_1_TraesCS5A01G373200
GAAACGAAGAAAAAGGAAGGAAGAGAGAGCGAGAGTCTTCTAGACGCGCGTCAAGATGAGCGCACCCGGCGGATCCAACC
GCCGCGACGTAACAGAAGCAGGTGGGAGTGGGACAGTGGCATGCCATCCACCACTAACCTCACCTCACCTCACCTCAGTT
GCCCGCCGCGTCA-CCCCCCTAACCAATCCTATTTAATCCCGCTGGCGGGCCCGCGCGACAGCGACACACATAAACAGGC
CACCCCACCCCACCGCCACGACGCGCACGCATCACTCCTCCCCATCTTCCCTTCCCTTCCCCCCCACCGTACCTCTTCTT
CTCGGCCTCACAACCAAAGATCTCCCCAAAATCTCCCGATTCCCCCCTCCCTCGCCCGCCGCCGCTCCCCTCCCCCCTCC
GCCCGCCGGCCGCGGCGCAGCGCAGCCGCCATTCCCCCTCCCCGGCCCGGCCGCGCCGCGTTGATTCG--TGGTTGTTGG
GGCAGTCGGTCGGTCG------------CTCCGTTCCTGGCTCTTTCTTGCCTGCCCTGCCCTG---TGCCCACGAGGTG
CCGTTCCTGGTCTCCCCTGTCCCCCC-ACCCCGCGGCCGTTACCGGATCTCGTGGTGAAGCCTGCCCAGCCGAGGGA---
-----GGGAGGGAGGGAGACGGCCGAGCTCCGGCCGGGATTCGGAG------------CCGGCGCCGCTCGCCATTTGGT
CTGATTCGGAGGAGCGACGCCATGCCCGGCTGCTCCTTGGATTGATCCTCGGCGCCGGTGCTCGCCGCCCCCCTCCCGGC
TCTCCTCGCCTTCTTGTCCTGCTTCAGCCCGCGAGCCTCCGGATCGAAAGATCCAATTCGCGGGGCATTTTCCCGTCCT-
CCTCCCCAACTCCTCCGCAGGACTGTCCCTGTCTGCCAATCGCTCTCAATCCCATCCTCTTTAAAAATCCGCTCTTTCTC
TCTCCCCCTCTCCCACCAAGATCCAATCCCCACCGCCGCCCGCATTCCGCGCTTCTCCCGCCCTCCCGCGGTCGCCGGCG
ATGACGTCGCCGGTGACGACGCACGCCTCGCCCTTCCTGCTCGCCCTGCTCCTGCTCCTCTCCATCCCGGTCGTCTTCCT
CCTCGGGCCGCGCCTCCTCCCGCCCAAGACGCTCCCCGCCATCCCGGACGCCGACGAGTCCGACGACCTCGCCCTCTTCC
GCCGCGCCATCCTCTCCTCTTCCTCCGCCAAGCCGGCCACCACCTCCTACTTCTTCCACCGCCGCCCTCGGCCCAAAGTC
GCCTTCCTCTTCCTCACCAACTCCGACATCGTCTTCTCGCCGCTCTGGGAGAAGTACTTCCGTGGCCACCGCAAGCTGTT
CAACCTGTATGTCCACGCCGACCCCTACTCCGTCCTAGAGCTGCCGCCCACGCCCACCTTCCGCGGCCGCTTCGTGCCAG
CCAAGGCCACGCAGCGAGCCTCCCCCACGCTCATCTCTGCCGCCCGCCGCCTCCTCGCCACCGCACTCCTGGACGACCCG
TCCAACCAGTTCTTTGCGCTGCTGTCCCAGTCCTGCATCCCGCTGCACCCGTTCCCCACCATGTACAAGACACTCCTCTC
CGACAATGCTGGCCCTCACGGCCACCACCGCAGCTTCATAGAGATAACGGACAACACCTCCATCCTTCATGATAGGTACT
ATGCCCGCGGTGATGCTGTGATGTTGCCAGAGGTGCCGTATGACCAGTTTCGTGCTGGATCGCAGTTCTTTGTGCTCACT
AGGAGGCATGCCATCATGGTTGTGAGGGACATGCGGCTCTGGAAGAAGTTTAAGCTGCCTTGTCTGGTCGAGCGCAATTA
CTCGTGCTATCCAGAGGAGCACTACTTCCCCACATTGCTGGATATGCAGGACCCTGCTGGATGCACCAAGTATAGCCTCA
CGAGGGTGAACTGGACAGATCAAGTCGAGGGCCACCCACACACGTATCATCCTGGGGAGGTGTCGGCCAACTTGATCAGG
GAGCTGAGGAAGTCAAATGCGAAATACTCATACATGTTTGCACGGAAATTTGCCCCGGAGTGCCTCGAGCCGCTGATGGA
GATTGCGGACTCAGTCATCCTACGTGACTAGGCCAGCAGCACCTCACATTTGGGGGTGTCGGATAAACTGAGATGATGAG
GTACCGAAATGCGCACTTGCTGCTGCACTGTTGAAAGAACTAATCTTCTGTGTAGGTGTTGTATTGAGAGAGTTATCTCT
GAGTGGAGTGTACATAGTATGAAATCCGGGAGTTTTAGGAATTATGCAGTCTGTATGCTTTAACACTTACATAATAAAGT
TGCACGCTTTGTTAAGTCGTTATGTCATCAATTTGAACTTTTAAATATTTATTATGTTGCCGTGTCAGCTTCTTGTAGGA
CAGTGGATGTGAAATGTATTTCCTCACTTGGTACATTGCTATCAATGCATGTAGTGCTTTTTCAATGAAGTGAACGCATC
TGTTGCTCTTATTCTAGCAGTTTGTATATGTACATTGTTATAGAAAGCTTTACTGTCTCTCTGGATTATTGTCAGACTCC
AGCACTGAAGTAATTTGATTTGCTACTTAAACGATCATTAATGTTAACTGATGACTCTCCAGAATTTGCACTTCTGGGGT
TCTGTTAGCAAATAAATTTTAGGGCAATGCTCCTTGTTTCCCCTGCAGGGTTGTGATGCGATGAACAGGCACGAGCTAGT
CCATCTATCCCTAGAGATCTTTCTTGAGGAATTCCCATCCTTGCTCTTCCATTATTGAAAGATTTTCTGGTAATAGACGG
TGCTGGTCGGTGAGTATGGTATGGCAACTAATTGTTCTATGTGAATATGCTGTTTGAACACGACCGCTTCTTGGCAAGTA
ACATATCAGTAGCTAGGATGATCATCCTATGTATTACATGGACTTAGGCCTCCTTTGGTTCATAGGGTAGGAAAATCGTA
GGAATAGGGAAGTCATAGAAAATGAGATGACATGTATCTCACATCCTATGAGTAGGAATAGGAAAGGAGATGACCTTTGA
TTCACATCATAGGATTTTTTCCGTTGAGTCTAGGCTAATGTTTATTTTCCTATGAATTGTGGAGGATAGGA
>chr5B_1
GAAAAGAAGAAAAAGGGAGAGGGAGAGGGGGGGGGGCTTCTAGACGCGCGTCAAGATCAGCGCACCCGGCGGATCCAACC
GCCGCGACGTAACAGAAGCAGGTAGGAGCAGGACAGTGGCATGCCATCCACTACTA----------ACCTCACCTCAGTT
GCCCGCCGCGTCAGCCCCCCTAACCAATCCTATTTAATCCCACTGGCGGGCCCGCGCGACAGCGACACACATAAACAGGC
CACCCC-----ACCGCCACGACGCGCACGCATCACTCCTCCCCATCTTCCCCT------TCCCCCCACCTCTTCCTTCTT
CTCGGCCTCACAAGCAAAGATCTCCCCAAAATCTCCCGATT----CCTCCCTCGCCCGCCGCCGCTCCCCTCCCCCTCCG
--CCGCCGACCGCCGCGCAGCCATTCT-------CCCGTCCCCGGCCTGGCCGCGCCGCGTTGATTCTTTTGGTTGTTGG
GGCAGTCGGTCGGTCGGTCGGTCGGTTGCTCCGTTCCTGGCTCTT-CTTGTCTGCCCGGCC-----CTGCCCACGAGGTG
CCGTTCCTGGTCTCCTCTGTCCCCCC-ACCCCGCGGCGGTTACCGGATCTCGCGGTGAAGCCAGCCCAGCCGAGGGAGGG
AGGGAGGGAGGGAGGGAGACGGACGAGCTCCGGCCGGGATTCGGACCCGGTGGGTGCCCCGGCGCCGCTCGCCATTTGGT
CTGATTCCGAGGAGGGACGCCATGCCCGGCAGCTCCTCGGATTGATCCTCGGCGCCGGTGCTCGCCGCCCCCCTCCCGGT
TCTCCTCGCCTTCTTGTCCTGCTTCAGCCCGG--GCCTCCGGATCGAAAGATCCAATTCGCGGGGCATTTTTCCGTCCT-
CCTCCCCAATTCCTCCGCAGGACTGTCCCTGTCTGCCAATCGCTCTCAATCCCTTCCTCTTTAAAAATCTGCTCTTTCTC
TCCCCCCCTCTCCCACCAAGATCCAATCCCCACCGCCGCCCGCATTCCGCGATTCTCCCGCCCTCCTGCGGTCGCCGGCG
ATGACGTCGCCGGTGACGACGCACGCCTCGCCCTTCCTGCTCGCCCTGCTCCTGCTCGTCTCCATCCCGGTCGTCTTCCT
CCTTGGGCCGCGCCTCCTCCCACCCAAGACGCTCCCCGCCATCCCGGACGCCGACGAGTCCGACGACCTCGCCCTCTTCC
GCCGCGCCATCCTCTCCTCTTCCTCCGCCAAGCCGGCCACCACCTCCTACTTCTTCCACCGCCGCCCTCCGCCCAAAGTC
GCCTTCCTCTTCCTCACCAACTCCGACATCGTCTTCTCGCCGCTTTGGGAGAAGTACTTCCATGGCCACCGCCAGCTGTT
CAACCTGTATGTCCATGCCGATCCATACTCCGTTCTAGAGCTGCCCCCAACGCCCACCTTCCGCGGCCGCTTCGTCGCAG
CCAAGGCCACGCAGCGTGCCTCCCCCACGCTCATCTCTGCCGCCCGCCGCCTCCTCGCCACCGCACTCCTGGACGACCCG
TCCAACCAGTTCTTTGCGCTGCTGTCTCAGTCCTGCATCCCGCTGCACCCGTTCCCCACCATGTACAAGACACTCCTCTC
CGACAATGCTGGCCCTCACGGCCACCACCGCAGCTTCATAGAGATAACGGACAACACCTCCATCCTTCATGATAGGTACT
ATGCCCGCGGTGACAATGTGATGTTGCCAGAGGTGCCGTATGACCAGTTTCGTGCTGGATCGCAGTTCTTTGTGCTGACC
AGGAGGCATGCCATCATGGTTGTGAGGGACATGCGTCTCTGGAAGAAGTTTAAGTTGCCTTGTCTGGTCGAGCGCAATTG
CTCGTGCTATCCAGAGGAGCACTACTTCCCCACATTGCTGGATATGCAGGACCCTGCTGGATGCACCAAGTATAGCCTCA
CGAGGGTGAACTGGACAGATCAAGTGGAGGGCCACCCACACACGTATCACCCTGGGGAGGTGTCGGCGAACTTGATCAGG
GAGCTGAGGAAGTCAAATGCGAAATACTCATACATGTTTGCACGGAAATTTGCCCCAGAGTGCCTCGAGCCGCTGATGGA
GATTGCGGACTCGGTCATCCTACGTGACTAGGCCAGCAGCACCTCACATTTGGGTGTGTCGGATAAACTGAGATGATGAG
GTATGGAAATGCGCACTTGCTGCTGCACTGTTGAAAGAACTAATCTTCTGTGTAGGTGTTGTATTGAGAGAGTTGTCTCT
GAGTGGAGTGTACATAGTATGAAATTCGGGAGTTTTAGGAATTATGCAGTCTGTATGCTTTAACACTTACATAATAAAGT
TGCACGCTTCGTTAAATCGTTATATCATCAATTTGAACTTTTAAATATTTATTATGTTGCTATTTCAGCTTCTTGTAGGA
CAGTAGATGTGAAATGTATTTCCTCACTTGGTACTTTGCTATCAATGCATGTAGTGCTTTTTCAGTGAAGTGAACACATC
TGTTGCTCTTATTCTAGCAGTTTGTATATGTACATTGCTACAGAAAGCATTACTGTCTCTCTGGATTATTGTCAGACTCG
AGCACTGAAGTAATTTGATTTGCTACTTAAACGATCATTAATGTTAACTGATGACTCTCCAGAATTTGCACTTCTGGGGT
TCTGTTAGCAAAGAAATTTTAGGGCAATGCTCCTTGTTTCCCCTGCAGGGTTGTGATGCGATGAACAGGCACGAGCTAGT
CCATCTATCCCTACAGATCTTTCTTGAGGAATTCCCATCCTTGCTCTTCCATGATTGAAAGATTTTCTGGAAATAGACGG
TGCTGGTCGGAGAGTATGGTATGGCAACTGATTGTTCTATGTGAGTATGCTGTTTGAACACGACCGCTTCTTGGCAAGTA
ACATATCAGTAGTTAGGATGATCATCCTATGTATTACACGGACTTAG---------------------------------
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>chr5D_29
GCGAAG---------------------------AGGCTTCTAGACGCGCGTCAAGATCAGCGCTCCCCGCGGATCCAACC
GCCGCGACGTAACAGAAGCAGGTAGGAGCAGGACAGTGGCATGCCATCCACTACTA----------ACCTCACCTCAGTT
GCCCGCCGCGTCA-CCCCCCTAACCAATCCTATTTAATCCCACTGGCGGGCCCGCGCGACAGCGACACACATAAACAGGC
CACCCC-----ACCGCCACGACGCGCACGCATCACTCCTCCCCATCTTCCCTT------CCCCCCACCCCACCTCCTCTT
CTCGGCCTCACAAGCAAAGATCTCCCCAAAATCTCCCGATT----CCTCCCTCGCCCGCCGCCGCTCCCCTCCCCCTCCG
CCGCCGG-------GCGCCGCCATTCT-------CCCGTCCCCGGTCCGGCCGCGCCGCGCTGATTCTTTTGGTTGTTGG
GGCAGTCGGTCG--------GTCGGTTGCTCCGTTCCTGGCTCTT-CTTGTCTGCCCGGCCCTGCCCTGCCCACGAGGTG
CCGTTCCTGGTCTCCTCTGTCCCCCCCACCCCGCGGCGGTTACCGGATCTCGTGGTGAAGCCAGCCCAGCCGAGGGAGGG
AGGGAGGGAG--------ACGGCCGAGCTCCGGCCGGGATTCGGAGCC----GGTGCCCCGGCGCCGCTCGCCATTTGGT
CTGATTCCGAGGAGGGACGCCATGCCCGGCCGCTCCTCGGATTGATCCTCGGCGCCGGTGCTCGCCGCTCCCCTCCCGGT
TCTCCTCGCCTTCTTGTCCTGCTTCAGGCCGG--GCCGACGGATCGAAAGATCCAATTCGCGGGGCATTTTTCCGTCCTC
CCTCCCCAATTCCTCCGCAGGACTGTCCCTGTCTGCCAATCGCTCTCAATCCCTTCCTCTTTAAAAATCTGCTCTTTCTC
TCTCCCCCTCTCCCACCAAGATCCAATCCCCACCGCCGCCCGCATTCCGCGCTTCTCCCGCCCTCCTGCGGTCGCCGGCG
ATGACGTCGCCGGTGACGACGCACGCCTCGCCCTTCCTGCTCGCCCTGCTCCTGCTCCTCTCCATCCCGGTCGTCTTCCT
CCTTGGGCCGCGCCTCCTCCCACCCAAGACGCTCCCCGCCATCCCGGACGCCGACGAGTCCGACGACCTCGCCCTCTTCC
GCCGCGCCATCCTCTCCTCTTCCTCCGCCAAGCCGGCCACCACCTCCTACTTCTTCCACCGCCGCCCTCGGCCCAAAGTC
GCCTTCCTCTTCCTCACCAACTCCGACATCGTCTTCTCGCCGCTCTGGGAGAAGTACTTCCATGGCCACCGCCAGCTGTT
CAACCTGTATGTCCATGCCGATCCCTACTCCGTCCTAGAGCTGCCGCCAACGCCCACCTTCCGCGGCCGCTTCGTGCCAG
CCAAGGCCACGCAGCGAGCCTCCCCCACGCTCGTCTCTGCCGCCCGCCGCCTCCTCGCCACCGCACTCCTGGACGACCCG
TCCAACCAGTTCTTTGCGCTGCTGTCTCAGTCCTGCATCCCGCTGCATCCGTTCCCCACCATGTACAAGACACTCCTCTC
CGACAATGCTGGCCCTCACGGCCACCACCGCAGCTTCATAGAGATAATGGACAACACCTCCATCCTTCATGATAGGTACT
ATGCCCGCGGTGATAATGTGATGTTGCCAGAGGTGCCGTATGACCAGTTTCGTGCTGGATCGCAGTTCTTTGTGCTGACC
AGGAGGCATGCCATCATGGTTGTGAGGGACATGCGGCTCTGGAAGAAGTTTAAGTTGCCTTGTCTGGTCGAGCGCAATTA
CTCGTGCTATCCAGAGGAGCACTACTTCCCCACATTGCTGGATATGCAGGACCCTGCTGGATGCACCAAGTATAGCCTCA
CGAGGGTGAACTGGACAGATCAAGTCGAGGGCCACCCACACACGTATCATCCTGGGGAGGTGTCGGCAAACTTGATCAGG
GAGTTGCGGAAGTCAAATGCGAAATACTCATACATGTTTGCACGGAAATTTGCCCCAGAGTGCCTCGAGCCGCTGATGGA
GATTGCGGACTCAGTCATCCTACGTGACTAGGCCGGCAGCACCTCACATTTGGGTTTGTCGGATAAACTGAGATGATGAG
GTACGGAAATGCGCACTTGCTGCTGCACTGTTGAAAGAACTAATCTTCTGTGTAGGTGTTGTATTGAGAGAGTTGTCTCT
GAGTGGAGTGTACATAGTATGAAATTCGGGAGTTTTAGGAATTATGCAGTCTGTATGCTTTAACACTTACATAATAAAGT
TGCACGCTTCGTTAAGTCGTTATGTCATCAATTTGAACTTTTAAATATTTATTATGTTGCTGTGTCAGCTTCTTGTAGGA
CAGTAGATGTGAAATGTATTTCCTCACTTGGTACTTTGCTATCAATGCATGTAGTGCTTTTTCAGTGAAGTGAGCACATC
TGTTGCTCTTATTCTAGCAGTTTGTATATGTACATTGCTACAGAAAGCTTTACTGTCTCTCTGGATTATTGTCAGACTCA
AGCACTGAAGTAATTTGATTTGCTACTTAAACGATCATTAATGTTAACTGATGACTCTCCAGAATTTGCACTTCTGGGGT
TCTGTTAGCAAATAAATTTTAGGGCAATGCTCCTTGTTTCCCCTGCAGGGTTGTGATGCGATGAACAGGCACGAGCTAGT
GCATCTATCCCTACAGATCTTTCTTGAGGAATTCCCATCCTTGCTCTTCCATGATTGAAAGATTTTCTGGTAATAGACGG
TGCTGGTCAGAGAGTATGGTATGGCAACTGATTGTTCTATGTGAGTATGCTGTTTGAACACGACTGCTTCTTGGCAAGTA
ACATATCAGTAGTTAGGATGATCATCCTATGTATTACACGGACTTAG---------------------------------
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>SNPs
----S-----------S--SSS-----S-S-S---S---------------------S----------------------
-----------------------S----SS---------------------S----SSSSSSSSSS--------------
-----------------------------------------S--------------------------------------
------SSSSS------------------------------------------SSSSSS---------S-----------
-------------S---------------------------SSSS-------------------------------SS-S
S-------S----S-------SSSS-SSSSSSSS---S-----------------------------S------------
---------------------------------------------S----S------S----------------------
---------------S---------------------S------------------------S-----------------
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-------S------S---------------S------S-----------------------------------------S
-------------------------------SSS-------------------------------------S--------
---------S-------------------------------------------S---------------S----------
------------------------------------------------------------------S-------------
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---S-----------------S----------------------------------------------------------
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-------------------------------------------------------------S----------S-------
---------------S-----S--------------------------S-------------------------------
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--------------------------S-----------------------------------------------------
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--------------SS------------------------------------------------------------S--S
------------------------------------------------------S-------------------------
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-------------------------------------------------------------------S------------
--------------------------------------------------------S-----------------------
------------------------------------------------------S-------------------------
----S---------------------------------------------------------------------S-----
-------------------------S------------------------------------------------------
---------S--------------------------------------------------S-------------------
----S-----------------------------S-----------------------------S----------S----
-------------------------------------S--S--------------------------------------S
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-------------S--------------------------------------S---------------------------
----------S------------------S--------------S-----------------------------------
------------S-------------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_110
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----------AACAGAAGCAGGTGGGAGTG--------------------------------------------------
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>reverse_1757
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----------------------------------------------------------------------------CACT
AGGAGGCATGCCATCA----------------------------------------------------------------
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>forward_298
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--------------------------------------TCCCCATCTTCCCTTCCCTT----------------------
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>reverse_1815
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------------------------------------------------------CTGCCTTGTCTGGTCGAGC-------
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>forward_934
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----------------------------------GCCAATCGCTCTCAATCCCA--------------------------
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>reverse_2919
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--------------------------------------TGGACTTAGGCCTCCTTTGG----------------------
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