>input_sequence_61599
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----------------------------------------ATGGCGTCCCTTCTCCGGCCCGCCTCGTCGTGCCCCTCCT
TTCGCCTACCCTCCTCCACAGCCTCTGCACCTCCGCCAAGCCTCCTTTCCAGGCGGCACAAGGCACCTCTCTTCCCACCC
ACGCCCCACGCCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCAGCAGCCTACGGAGGCGCCCAGCTGCTGGGTCCGGTCGA
CACGCAGACATTCATCATCGCCGCCTCCGTCGTCGCCGCGGTCTCACTGTCTCTCGTCCTCGGCCTTAAGGTCTCCGCGC
CGTGC--C------TCCTCCTCTCTCTGTT--TCTTAGCGATAAGCGACGAGTGGCTGTTGCGAAGTG-TGATTTCGTTT
CCTTCTCGTTCGCAGGGTGACCCTGTTCCGTGCGACCGGTGTGCTGGAAATGGTAC------TTCCTCTCGTCTCTTCTC
TTGATC-AGTTTTGG-AAATGAAATTGCTCCGCA----GATGCATTGCTTCGCGATTTGTACTAGAGCTGAAGCTTTGCA
CATTTACACCCTATCCAACTAGTGAT---GTACTGTATCATCTATGGCCAATCTGTGACTTCAGTTTGTAAATTTGAACA
AACTAACTAGTCATACGGAAGAAACAAAACGAATGGAGCATATAAAATTCAACTAAGTTGTTCGTTTTACCGTAATGTA-
-----TTATGGTTATGACATTTTGTGCGAGGTTATGACATTTTGTGCATGTCGCAC--TCAAAACATTCGTACGGGCAGA
CTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGGGGCACAAAGTGCGTCTTCTGCAATGACGGCAAGATGAAGGCGG
ATAACGGGGTGGTCGAATGCCGGGTATGCAGGGGAGCAGGTTGCCTTCTTACCTTGTTTCATTTCCTTCCTTCACATTGC
GCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAGCACTGATTCATTGTGAACTGGAAAAAATGCTCAATTATCTTCAT
TTCGTCTTCCCGGTTACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGATACTCTGCAAGAAGTGCTCAGG
TTCTGGTTACTCTAAGCGCTTGTAG-------------------------------------------------------
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>chr3A_1_TraesCS3A01G296000
CTGTCACGACCAGCTATGCTACCTTGCACTATGTGTTGTAAGGAAAGCTTGATTCATATATTAGTCCCACCTTGCTCCCT
TGCACGCAATCCTCTCAATTTAAATACGTCTTTGAATTTTCTAGGTATCAAGCAGCCTTCTCATGAGTCAATAAGGAAGG
AAATAATTTGTCATGTTCGGATAAATATGGAAGGAAAGGAGAATAAGCCGCTGTTCCATTCCTCTACAGGATTGGAAAGA
GAATAATAAGGAAATAAGTCGTCCGGGCGGAAAGAGAGAAAATTAGGATGAACCCTGCTGCTGAAATTAAGGAAGCAAAA
TCGAATCCTATCCTCGAATTAAGGAAGAAGAGCCAGTTGTGTATGATCTCAGTGAGCCTCTTGTGGTCACCCAAATATGC
GCCGGCCTCGCCCGCTGCGCCATGGACAACATCTGCTCCAAGAACTCGTCGTCATCGCTGGAGCTAGCATAACTAGAGTA
TCCGCCACCGTCGATTCCTAATAGGCGGGCCTCACTGGTCAGTTTCCCTGTCAAAACTTGTTTAAACGCGGATCCCCCCA
GACTTGATACTGAAGTAAACAAAACGTAAAGTAGTGGCAATGCATTGGACGTGGAGTTTCTACACCCAGGAGCACATGCT
CCTGGTGTGAATAGTAAATTCAAAAAATTCTGAATTTTTTTTGACATACTTTCACAGATGTTTGTTGTGCACGCAAAATT
TCATTGCGAAATCACATTGGTGGAAGGCGTGCCAAAAAAACAAAATCGATGCTCTGAAATGTTTTTTGAACATTTTTTTT
ATTTTTAAATTTTACTATTCATACCAGGAGCATTTGCTCCTGGGTGTAGAAAGGTACTTCCGCAATGGATTATCCTAGCT
ACAATTATATGATACCAATGTGCAATTAACCCCTTTGGTCGAACGGGTTGGGGGCAAACCAAATACCCAGAGTCCTCTCC
TCCTTTACCTTCCCCCGTTGTTGCGCCCGGTGCTTCTTCCATGGCGTCCCTTCTCCGGCCCGCCTCGTCGTGCCCCTCCT
TTCGCCTACCCTCCTCCACAGCCTCTGCACCTCCGCCAAGCCTCCTTTCCAGGCGGCACAAGGCACCTCTCTTCCCACCC
ACGCCCCACGCCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCAGCAGCCTACGGAGGCGCCCAGCTGCTGGGTCCGGTCGA
CACGCAGACATTCATCATCGCCGCCTCCGTCGTCGCCGCGGTCTCACTGTCTCTCGTCCTCGGCCTTAAGGTCTCCGCGC
CGTGC--C------TCCTCCTCTCTCTGTT--TCTTAGCGATAAGCGACGAGTGGCTGTTGCGAAGTG-TGATTTCGTTT
CCTTCTCGTTCGCAGGGTGACCCTGTTCCGTGCGACCGGTGTGCTGGAAATGGTAC------TTCCTCTCGTCTCTTCTC
TTGATC-AGTTTTGG-AAATGAAATTGCTCCGCA----GATGCATTGCTTCGCGATTTGTACTAGAGCTGAAGCTTTGCA
CATTTACACCCTATCCAACTAGTGAT---GTACTGTATCATCTATGGCCAATCTGTGACTTCAGTTTGTAAATTTGAACA
AACTAACTAGTCATACGGAAGAAACAAAACGAATGGAGCATATAAAATTCAACTAAGTTGTTCGTTTTACCGTAATGTA-
-----TTATGGTTATGACATTTTGTGCGAGGTTATGACATTTTGTGCATGTCGCAC--TCAAAACATTCGTACGGGCAGA
CTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGGGGCACAAAGTGCGTCTTCTGCAATGACGGCAAGATGAAGGCGG
ATAACGGGGTGGTCGAATGCCGGGTATGCAGGGGAGCAGGTTGCCTTCTTACCTTGTTTCATTTCCTTCCTTCACATTGC
GCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAGCACTGATTCATTGTGAACTGGAAAAAATGCTCAATTATCTTCAT
TTCGTCTTCCCGGTTACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGATACTCTGCAAGAAGTGCTCAGG
TTCTGGTTACTCTAAGCGCTTGTAGCCCCAGCCCCAGCTACAGAACATCATGTGCATTTGTCAACCGGGCAAGTTGCGAG
TTTAT-----GTGTGGGCGC--------------------------------------TGTTTAGATAGATATGAGTATA
TACGATGGCGATGATGTATTAGAATATGCAGAATTGTATGTTTCGCCCTGTCCATGTATACCCGT---CCTTAATCATCT
GATAAGATATAGTACGTACGATGGCTCCACGTCCCCTGTTTAGTTCATGTTTTTATACCATGTAGCAAAACTGATGTTAC
CAGTCAGGTTTATCAATGTTGCAACTTTTGCAGCCCTGAGATCTTCAGATTTATCCATGTTACAACTGTTCAGCCCTAAG
ATCTTCATGTCGCGCTGCAATACCTGGTTATATGATAGGCAACAGAGAAGATAGATACA-----CTTCGCAGCACAATTC
CATCTCAAATTAAAATGTTTTAGCTGAAGCGTCTGAAAACAGTACTATACATAATGCCCATACAACCAAAAGTCATACAC
TTATGATAGTTGCAGATAAAATTAGTAAAATATGATTCTTCATCGACAATTACAACCATAATGAAGAGTTCAAAAGAGAA
ACCACTTTAGTACCCTAGATACCCAGCGAAACACACTTCTCAGGCTTCAGCTCCAACAAGGCATGTTATACGACTGTAGC
TTGTTACACATCAGTTATCTGGCTACCGAATTCTGAGTACTCATTCTCATTGGGCTTCTTCGCGGTACCTTCTCCAACAT
GCCTCTCTGCAGGTTGCCTAGGAAACGGTCTCGAGTCCCCGTCGTGAATGGTTGGAAATCCAAAAGATTTGAAGAATTCG
TTGGTCATCCGCTCAGCTTCATCCAGAAAGCTACCGAAGCCTTTCTCAATAGCTTCAATGTCACTGCGAAGTCCTGGAAA
TGCAAAGGGCTCTTTTGTTGGGAAGCCAAGAGAATGCGAGGCACCACCGGTCATTTCATCTGTGACATCTTCTTCGGTGT
TCTCAGTTTTCGACTCCACCAGTTCAGAAGGCCTAA
>chr3B_893
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------------TACCAATGTGCAATTAACCCCTTTGGTCGAACTGGTTGGGGGCCAACTAAATACCCATAGTCATCTCC
TCCTTTACCTTCCCCTGTTGTTGCGCCCGGTGCTT---CCATGGCGTCCCTTCTCCGGCCCGCCTCGTCGTGCCCCTCCT
TTCGCCTCCCCTCCTCCACAGCCCCTGCACCTCCGCCGAGCCTCCTTTCCAGGCGGCACAAGGCACCTCCCGTCCCACCC
ACGCCCCACACCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCCGCAGCCTACGGAGGCGCCCAGCTGCTGGGTCCCGTCGA
CACGCAGACATTCATCATCGCCGCCTCCGTCGTCGCCGCGGTCTCCCTGTCACTCGTCCTCGGCCTCAAGGTCTCCGCGC
GCTGCCACTCCTCCTCCTCCTCTTCTCCTTAATCTTAGCGATAAGCGACGAGTGGCTGTTGCGAATTGTTGATTTCGTTC
CTTTCTCGTTCGCAGGGGGACCCCGTTCCGTGCGACAGGTGTGCTGGAAACGGTACCTCTCCTTGCTCTCGTATCCTCTC
TTGATCAAGTTTTGGAAAATGAAATTGCTCCGCCTAGTGATGCATTGCTTCGCGA-TTGTACTAGAGCTGAAGCTT-GCA
CATCTACACCCTATCCAACTAGCGAT---GTATCATGA-----ATGGCCGATCTGTGGATTCAGTTTGTGAGCTTGAACA
AACTAACTGGTCATACGGAAGAAACAAAACGAATGGAGCATATAAAATTCAACGAAGTTGTTCGCTTTACAGTAATGTA-
-----TTAT--------------------GGTTATGACATTTTGTGCATGTCGCACGCTCAAAACGTTCCTACCTGCAGA
CTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGAGGCACAAAGTGCGTCTTCTGCAATGACGGCAAGATGAAGTCGG
ATAACGGGGTGGTCGAATGCCGGGTATGCAGAGGAGCAGGTTGCCTTCTTACCTTGTTTCATTTCCTTCCTTCACATTGC
GCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAGCACTGATTCATTGTGGACTGGACAAAATGCTCA-TTGTCTCCAT
TTTGTCTTT-CGGCGACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGATACTCTGCAAGAAGTGCTCAGG
TTCTGGTTACTCTAAGCGCTTGTAGCCCCAGCTGCCC------AACATTATGTGCATTTGTCAAGCAGACAAGCTAGCTG
GAGTTTACACGTCTGGGCGCTGTACAGACAAATGGACGGCTCCTCTCCATTGCCGAACTGTTTAGATAGATACGAGC--A
TACGATGGCGATGATGTATTAGAATATACAGAGTTGTATTTTTCGACCTGTCCATGTAAGTATACAACCCTTAATCATCT
GGCAAGATCAACTACGCGCAATGGCTCCACGTTTCCTGATTAGTCCATGTTTTTATAA-----ACCAAAACTGGTGTTAC
GAGTCAGATTT--------------------------------------------------GCAACTGTTCAGCACTAAA
ATCTTCGGGTCGCGCTGCAATACCAGGTTATATGATTGGCAACAGAGAAGATAGATACGCTACGCTTCGCAGCATAATTC
CATGCCAAATTAAAATGTTTTAGCTGAAGCATCTGAAGACAGTACTATTACAT-----------ACCAAAAGTCATACAC
TTATGATAGTTGCAGGT------------------------------TATTACAACCATGATGAAGTGTTCAAAAGAGAA
ACCACTTTAGGATTCTAGATACTCAGCGAAACACAGTTCCTGGGCTTCATCTCCAAGAAGGAACGTTATATGACTGTAGC
TTGTTACACATCTGTTATCTGGCTACCGAATTCGGAGTACTCATTCTCATTGGGCTTCTTTGCGGCACCTTCTCCAATAT
GCCTCTCTGCAGGTTGCCTAGGAGATGGTCTCGAGTCCCCGTCATGAATGGTTGGAAATCCAAAAGATTTGAAGAACTCG
TTGGTCATCCGCTCAGCTTCATCCAGAAAGCTACCGAAGCCTTTCTCAATAGCTTCTATGTCACTGCGAAGTCCTGGAAA
TGCAAAGGGCTCTTTTGTCGGGAAGCCAAGAGAACGCGAGGCACCACCGGTCATTTCATCCGTGACATCTTCTTCGGTGT
TCTCAGTTTTTGATTCCACCAGCTCGGAGGGCCTAA
>chr3D_903
CAATTAT-------------------------------------------------------------------------
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----------------------------ACCCCTTTGGTCGAACTGGTTGGGGGCAAACCAAATACCCATAGTCCTCTCC
TCCTTTACCTTCCCCCGTTGTTGCGCCCGGTG---CTTCCATGGCGTCCCATCTCCGGCCCGCCTCGTCGTGCCCCTCCT
TTCGCCTCCCCTCCTCCACAGCCTCTGCACCTCCGCCGAGCCTCCTTTCCAGGCGGCAAAAGGCACCTCCCGCCCCACCC
ACGCCCCACGCCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCCGCGGCCTACGGAGGCGCCCAGCTGCTGGGTCCCGTCGA
CACGCAGACATTCATCATCGCCGCCTCCGTCGTTACCGCGGTTTCCTTGTCCCTCGTCCTCGGCCTCAAGGTCTCCGCGC
GGTGC--CTCCTCCTCCTCCTCTCCCTGTT--TCTTAGCGATAAGCGACGAGTGGCTGTTGCGAAGTG-TGATTTCGTTC
CTTTCTCGTTCGCAGGGGGACCCCGTTCCGTGCGACCGGTGTGCTGGAAACGGTACCTTTCCTTGCTCTCGTCTCCTCTC
TTGATCAAGTTTTGG-AAATGAAATTGCTCCGCA----GATGCATTGCTTGGCGA-TTGTACTAGAGCTGAAGCTTTGCA
CACTTACACCCTATCCAGCTAGCGATGTAGTATCATGA-----ATTGCCGATCTGTGAATTCAGTTTGTAAATTTGAACA
AACTAACTAGTCATACGGAAGAAACAAAACGAATGGAGCATATAAA-TTCAACGAAGTTGTTCGTTTAACAGCACAGTAA
TGTATTTAT--------------------GGTTATGACATTTTGTGCATGTCGCACGCTCAAAACATACCTGCGTGCAGA
CTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGAGGCACAAAGTGCGTCTTCTGCAATGACGGCAAGATGAAGGCGG
ATAACGGGGTGGTTGAATGCAGGGTATGCAGAGGAGCAGGTTGCCTTCTTACCTTGTTTCATTTCCTTCCTTCACATTGT
GCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAACACTAATTCATTCTGGACTGGACAAAATGCTCA-TTATCTTCAT
TTTGTCTTTCCGGCAACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGATACTCTGCAAGAAGTGCTCAGG
TTCTGGTTACTCTAAGCGCTTGTAGCCCCAGCCCCAGCTACAGAACATCATGTGCATTTGTCAACCGGGCAAGTTGCGAG
TTTAT-----GTGTGGGCGCTGTACAGATAAATGGAGGACT-CTCTCCATTGCCGAACTGTTTAGATAGATATGAGTATA
TACGATGGCGATGATGTATTAGAATATGCAGAATTGTATGTTTCGCCCTGTCCATGTATACCCGT---CCTTAATCTTCT
GATAAGATATAGTACGTACGATGGCTCCACGTCCCCTGTTTAGTTCATGTTTTTATACTATGTACCAAAACTGATGTTAC
CAGTCAGATTTATCAATGTTGCAACTTTTGCAGCCCTAAGATCTTCAGATTTATCGATGTTGCAACTGTTCAGCCCTAAG
ATCTTCATGTCGCACTGCAATACCTGGTTATATGATAGGCAACAGAGAAGATAGATACA-----CTTCGCACCACAATTC
CATCCCAAATTAAAATGTTTTAGCTGAAGCGTCTGAAAACAGTACTATACATAATGCCCATACAACCAAAAGTCATACAC
TTATGATAGTTGCAGATAAAATTAGTAAAATATGATTCTTCATCGCCTATTACAACCATAATGAAGAGTTCAAAAGAGAA
ACCACTTTAGTACCCTAGATACCCAGTGAAACACACTTCTCTGGCTTCAGCTCC---AAGGCATGTTATATGACTGTAGC
TTGTTACACATCGGTTATCTGGCTACCGAATTCTGAGTACTCATTCTCATTGGGCTTCTTCGCAGTACCTTCCCCAATAT
GCCTCTCTGCAGGTTGCCTAGGAAATGGTCTCGAGTCCCCGTCATGAATGGGTGGAAATCCAAAAGATTTGAAGAATTCG
TTGGTCATCCGCTCAGCTTCATCCAGAAAGCTACCGAAGCCTTTCTCAATAGCTTCTATGTCACTGCGAAGTCCTGGAAA
TGCAAAGGGCTCTTTTGTTGGGAAGCCAAGAGAACGCGAGGCACCACCGGTCATTTCATCTGTGACATCTTCTTCGGTGT
TCTCAGTTTTCGACTCCACCAGTTCAGAAGGCCTAA
>SNPs
-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------S------------------------S----------
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-------S-----------------------------S-------------------------------S-S--------
-----------------------------------------S--------------------------------S-----
---------------------------------------------S-----S--------------S-------------
S-----------------------S------------------------------------------------------S
-S---------------S-----S--------------------------S-------------S----------S----
-------------------------------------------------------S------------------------
----------------------S---------SSS-SSSSSSS------S--------S---------------------
-----------------------------------------------------S----------------S---------
---------SSSSSSSSSSSSSSSSSSSS----------------------------------------S----S-----
------------------------------------S-------------------------------------------
-------------------------------S------------------------------------------------
---------------------------------------------------S------S----------S----------
--S-----S----SS-----------------------------------------------------------------
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----------------------------------------------------------S-----S---------------
-------S-----------------------------S-----------------S-----S------------------
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----S---------------------------------------------------------------------------
---------------------------------------------S-S--------------------------------
-----------------------------------------S--------------S-------------S---------
------------S----------------------------------------------------------------S--
-------------------------S-----------------S------------------------------------
--------------------------------------------------------S-----------------------
----------------------------------S---------------------------------------------
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>forward_470
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--------------------------------------------------GTCATCGCTGGAGCTAGCAT----------
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>reverse_1872
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-------------------------------GGGAGCAGGTTGCCTTCTTA-----------------------------
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>forward_517
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-----------------CTAATAGGCGGGCCTCACTG-------------------------------------------
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>reverse_2003
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--CGTCTTCCCGGTTACCTCTT----------------------------------------------------------
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>forward_750
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----------ATCACATTGGTGGAAGGCGT--------------------------------------------------
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>reverse_2762
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-----------------------------------------AGGCTTCAGCTCCAACAAGG-------------------
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