>input_sequence_61597
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------------------------------------------------ATGGCATTGGATGACGTCACCCACCGGACGCT
GGAAGTGAACGGCATCAAGATCCACGTCGCCGAGATCGGCGACGGCGCGGCCGGCACCGTCCTCCTCCTGCACGGCTTCC
TGGAGCTTTGGTGCTCGTGGCACCACCAGCTGCGATCCCTCTCCGAGCGCGGCTACCGCTGCCTGGCCCCCGACCTCCGC
GGCTATGGCGACTCCGCCGCCCCGGCCTCCCCGTCGTCCTACACCGCTCTCCACATCGTGGGCGACCTGGTCGGACTCCT
CGACGCCCTGTCCCTGCCGCAGGTGTTCGTGGTGGGGCAAGGCTGGGGCGCCCTGCTGGCGTGGCACCTCTGCACGTTCC
GCCCCGAGCGGGTGCGCGCGCTGGTCAACATGAGCGTCGCCTTCATGCCGCGCAACCCGGCCGTGAAGCCGCTCGAGCTG
TTCCGTCGGCTCTACGGCGACGGGTACTACCTCCTCCGGCTGCAGGAGCCCGGCGTCATGGAGGCAGAGTTCGCGCAGAT
GGACACCAAGTTCATCTTCAAGAAGCTCCTGACGACCCGCGACACCGGCGCCATCTCCATGTCCAAAGAGTGGTGGGGCC
CGACGGACGAGGACATTCCTTTGCCCCCGTGGGTGTCAGAGGACTACGTCGGCCACCTCGCCGCCAAGTTCGACGAGACG
GGGTTCGCCGGCGCCATGAACTTCTACCGCTGCCTCGACCTGTAAGAACTTTGCTGCTG---CAAATTAGTCCTCGTGCT
TTTCGTTCATTTCATACGGCTTAACTCGATTTCATTCTGGATGAATAAACTTGGTAATTTATGGATGTGATGGAGGAACT
GGGAGCTGACTGCGCCGTGGACTGCGGCCAAGGTGACGGTGCCGACCAAGTTCATGGCGGGGGAATCGGCGATGTCGTAC
AACTACACGGGGGTGCAGGAGTACATACACAAGGGCGGGCTCAAGGGCGACGTGCCGGGGCTTGAGGAGGTGGCGGTAAT
CGCCGGCGGTGCGCACTACATCCACCTGGAGAAGGCGGAGGAGGTCAGCGAGCACATCTACGACTTCTTCAAAAAGTTCT
GA------------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G255200
GATACGAGGACGTTTTTTCTGCAAACAAGTTTTAGAAAAATTGATCGACGATGCTATGTGTGTACAACTGCCATGCGTGA
CACGCAACTTCATGAAAAAGAGCATCTTCCACCATGAGATCTACGTCGGGAACCTAACCCTTGGCAATGATAAACAATGG
CGGCACACGACGGTGCCGGGTGGAGCGGCGACTACATCGTCTATCGGCGATCTCATGGTGCTCTTGACCATGCGGCGCTG
CCCGCTTCCCTCAAGTTCCTGGAGCACGTCATCCCACTTACGCAGTGAGGTTGACTGCCATGGGCATCCCAGTGTGCGGC
GTAGAGGAGCATTCTAATGAGCTCTGTGCTACGCCGCCGCTAGGGCATGGATGCTCCTGTACGTCCAGCGTTGAGGGGCG
GAAGACCTGGCACACGTTGCACGTGTTCGCGTCCAGGATCATGCTTATTGGCAGCCGGAGCTATTGGGGACGGTTCTGGG
AGGGCGTGTTGACGCCATCAGCGATGCGCGCCACTTGGTGTAGTACGTCGCCGGCTAGTCCATGTATACCAAGATAACGC
CGAACGGTTGAACTTTGTTAAATTTCAATCTTTCTTAACTTTTTTGCGGAATCGTTCGGTTTAGTTGAACTTTGTTAAAT
TTCATCCTTTCTTAAACATATCAAAATTTAACTAATATCATCCAGTTTGCATGAATTTTGTTCGTTTCTGTGAAAGATCC
GTTTGAAATGAGGCGGGCGTTTGACGCACCTGATTGCATGTCCGTTCCATATCCGCGAACACATCAGGAAACGTCGCTGG
ACGTTTGGTGTGGCCGATGCATGCTGTTGGCATTTACATACAACGACAAAACAGGAACAACAGAGTATCTTCATCTTGCG
TGCTGGCATT------TACATACAACGACAAGACCATGAGCGAGGTCGAAAGAGTCATGGAC-AACAAATATATATACAG
GAGAAACA-CACAGTCACGCTCACAGAGAGAGCGAGATGGCAACGGCAATGGCATTGGATGACGTCACCCACCGGACGCT
GGAAGTGAACGGCATCAAGATCCACGTCGCCGAGATCGGCGACGGCGCGGCCGGCACCGTCCTCCTCCTGCACGGCTTCC
TGGAGCTTTGGTGCTCGTGGCACCACCAGCTGCGATCCCTCTCCGAGCGCGGCTACCGCTGCCTGGCCCCCGACCTCCGC
GGCTATGGCGACTCCGCCGCCCCGGCCTCCCCGTCGTCCTACACCGCTCTCCACATCGTGGGCGACCTGGTCGGACTCCT
CGACGCCCTGTCCCTGCCGCAGGTGTTCGTGGTGGGGCAAGGCTGGGGCGCCCTGCTGGCGTGGCACCTCTGCACGTTCC
GCCCCGAGCGGGTGCGCGCGCTGGTCAACATGAGCGTCGCCTTCATGCCGCGCAACCCGGCCGTGAAGCCGCTCGAGCTG
TTCCGTCGGCTCTACGGCGACGGGTACTACCTCCTCCGGCTGCAGGAGCCCGGCGTCATGGAGGCAGAGTTCGCGCAGAT
GGACACCAAGTTCATCTTCAAGAAGCTCCTGACGACCCGCGACACCGGCGCCATCTCCATGTCCAAAGAGTGGTGGGGCC
CGACGGACGAGGACATTCCTTTGCCCCCGTGGGTGTCAGAGGACTACGTCGGCCACCTCGCCGCCAAGTTCGACGAGACG
GGGTTCGCCGGCGCCATGAACTTCTACCGCTGCCTCGACCTGTAAGAACTTTGCTGCTG---CAAATTAGTCCTCGTGCT
TTTCGTTCATTTCATACGGCTTAACTCGATTTCATTCTGGATGAATAAACTTGGTAATTTATGGATGTGATGGAGGAACT
GGGAGCTGACTGCGCCGTGGACTGCGGCCAAGGTGACGGTGCCGACCAAGTTCATGGCGGGGGAATCGGCGATGTCGTAC
AACTACACGGGGGTGCAGGAGTACATACACAAGGGCGGGCTCAAGGGCGACGTGCCGGGGCTTGAGGAGGTGGCGGTAAT
CGCCGGCGGTGCGCACTACATCCACCTGGAGAAGGCGGAGGAGGTCAGCGAGCACATCTACGACTTCTTCAAAAAGTTCT
GACCAAAGCGCAGGCCTTCGAGGTATTTGGAATTGTAATATCCTCTTTTGTCTCTTTGCAATCGTATAGTGCTGTGGGAA
TGCTTTTGCATTGCAACGGGATATAAATGTTCTATACGTTAGTTAGTGATTTATCTATTATATTAATGTGATTGTATAAA
TACTCCATTTCTTTCTTTTTACTCCACGTATAAAATTTAGTTAAAGTCAAACTACACAAAGTTTGACCAAAACTATATCA
AAAAATATGAACATCTACAATACTAAAACTATATAGTATGAAAATACATTTCATGATGCATCTGATAATATTGATTTCAT
ATTGCGAACGCTGATATTTTTTAATATAAAGTTAGTCAAACTTTGCGAAGTTTGATTTGACCAAACTTTATATGCAGACT
AAAAAAACGGAAGGAGTACATGTTTATCAAATCCTGCTCGTGATTGTGTAAATAAATGTTTGTTAAATAAATTAAGATGG
ATTTGGTGCAAAAAGTAAGTATATTAAGTTGATTGACTAGGGGAAGGTGTGAAAAAGCATGTGGTGGGACTAAAGAACCG
GTTGGATGAAAAATAATCATGAATGGACGTGGTGGAAGGAGGGGGAACCGGTTGACGAAGCGTTCTGCTGGTAGGAAGTC
GAGTATGCCTCTCTTTTTCTGTAGGCTCGGTTCTTTTCAATTTACTAGGACCCATGTTCAAGAGTTCATCCGATTAATCA
GTTAACTTGTCGATCAATCCCTACTCATAGGGTCATTGAGTAGCCGATAAACTGATAAATAGTTGGATTAAGTGATTACC
ATGCCGAAGCCTATTAATTCCCTACTCGCCAGCTAACTGAGCAGTTACCAGTTATTTCCTCAAAAAATGACTAGGACAAT
GCCCGTGCGTTGCAACGCGATATAAATATTTTGTAAATAAATGTTTGTGCTTTGACTGCCAATATTAATGCAATTGTGTA
AATAAATATTTATCAAATCCTGTATGTGATTTTCCTTATAGT
>chr3D_845
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--------------------------------------------GACAAAACAGGAACAACAGAGTATCTTCATCTTGCC
TCCTAATAGCATCTTCTAGATATAACGACAAGACCATCAGCGAGGACCAAAGAGTAGAGGACAAACAAATATATATATAG
CAGAAACA-CACAGTCACGCTAACAAAGAGAGCGAGATGGCAACATCAATGGCATTGGATGGCGTGACCCACCGGACGCT
GGAAGTGAACGGCATCAAGATCCATGTCGCCGAGATCGGCAACGGTGCGGCCGGCACGGTCCTTCTCCTGCATGGATTCC
TGGAGCTTTGGTGCTCGTGGCACCACCAGCTCCGATTCCTCTCCGAGCGCGGCTACCACTGCCTGGCCCCCGACCTCCGC
GGCTATGGCGACTCCGCCGCCCCGATCTCCCCGTCGTCCTACAGTGCTCTCCACATCGTAGGCGACCTGGTTGGACTCCT
CGACGCCTTGTCCCTACCGCAGGTGTTTGTGGTGGGACAAGGCTGGGGAGCCCTGCTGGCGTGGAACCTCTGCATGTTCC
GCCCCGAGCGGGTGCGCGCGCTGGTCAACATGAGCGTCGCCTTCATGCCGCGCAACCCCTCCGTGAAGCCACTTGAGTTG
TTTCGGCGGCTCTACGGCGACGGATACTACCTCCTCCGGCTGCAGGAACACGGCGTCATGGAGGCAGAGTTCGCGCAGAT
GGACACCAAATTCATCTTTAAGAAGCTCCTGACGACCCGCGACACCGGCGCGATCTCGCTGTCCAAAGAGTGGTGGGGCC
CGACAGACGAGGACATTCCTTTGCCCCCGTGGGTATCACAGGATTACGTCGGCCATCTCGCGGCCAAGTTCGACCAGACG
GGGTTCTCCGGCGCCATGAACTTCTACCGCTGCCTCGACCTGTAAGAACTTCTACCGGAGTACAAATTAGTACTCGTGTT
TTTCATTCATTTCATACGGCTTAGTTTGATTTAATTCTTGATGATTAAACTTTGCAATTTTCGGATATGTTGGAGGAACT
GGGAGCTGACTGCGCCGTGGACTGCGGCCAAGGTGACGGTACCGACCAAGTTCATGGCGGGGGAATCGGCGATGTCGTAC
AACTACACGGGGGTGCAGGAGTACATACACAAGGGCGGCCTCAAGGGAGACGTGCCAGGGCTTGCGGAGGTGGTGGTAAT
CGCAGGCGGTGCGCACTACATCCACCTGGAGAAGGCAGAGGAGGTCAACGAGCACATCTACGACTTCCTGAAAAAGTTCT
GACGAAAGCGCAGCCTTGCGAGGTA-------------------------------------------------------
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>chr3B_845
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--------------------------------------------GACAAAACAGGAACAACAGAGTATCTTCATCTTTCC
TCCTAATAGCATCTTCTAGATACAACGACAAGACCATCAGCGAGGACCAAAGAGTAGAGGACAACAA---ATATATATAG
TAGAAACGCCACAGTCACGCTCACAAAGAGAGCGAGATGGCAACATCAATGGCATTGGATGGCGTGACCCACCGGACGCT
GGAAGTGAACGGCATCAAGATCCATGTCGGCGAGATCGGCAACGGTGCGGCCGGCACGGTCCTTCTCCTGCATGGATTCC
TGGAGCTTTGGTGCTCGTGGCACCACCAGCTCCGATTCCTCTCCGAGCGCGGCTACCGCTGCCTGGCCCCCGACCTCCGC
GGCTATGGCGACTCCGCCGCCCCGATCTCCCCGTCGTCCTACAGTGCTTTCCACATCGTAGGCGACCTGGTTGGACTCCT
CGACGCCTTGTCCCTACCGCAGGTGTTTGTGGTGGGACAAGGCTGGGGAGCCCTGCTGGCGTGGAACCTCTGCATGTTCC
GCCCCGAGCGGGTGCGCGCGCTGGTCAACATGAGCGTCGCCTTCATGCCGCGCAACCCCTCCGTGAAGCCACTTGAGTTG
TTTCGGCGGCTCTACGGCGACGGATACTACCTCCTCCGGCTGCAGGAACACGGCGTCATGGAGGCAGAGTTCGCGCAGAT
GGACACCAAATTCATCTTTAAGAAGCTCCTGACGACCCGCGACACCGGCGCGATCTCGCTGTCCAAAGAGTGGTGGGGCC
CAATGGACGAGGACATTCCTTTGCCCCCGTGGGTATCACAGGATTACGTCGGCCATCTCGCGGCCAAGTTCGACCAGACG
GGGTTCTCCGGCGCCATGAACTTCTACCGCTGCCTCGACCTGTAAGAACTTCTACCGGAGTACAAATTAGTAGTCGTGTT
TTTCATTCATTTCATACGGCTTAGTTTGATTTAATTCTTGATGATTAAACTTTGCAATTTTCGGATATGTTGGAGGAACT
GGGAGCTGTCTGCGCCGTGGACTGCGGCCAAGGTGACGGTACCGACCAAGTTCATGGCGGGGGAATCGGCGATGTCGTAC
AACTACACGGGGGTGCAGGAGTACATACACAAGGGCGGCCTCAAGGGAGACGTGCCAGGGCTTGAGGAGGTGGTGGTAAT
CGCCGGCGGTGCGCACTACATCCACCTGGAGAAGGCAGAGGAGGTCAACGAGCACATCTACGACTTCCTGAAAAAGTTCT
GACGAAAGCGCAGCCTTGCGAGGTAT------------------------------------------------------
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>chr3A_1856
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--------------------------GCCAAGGTGACGGTGCCAACCAAGTTCATGGCGGGGGAATCGGCGATGTTGTAC
AACTACACGGGGGTGCAGGAGTACATACACAAGGGCGGGCTCAAGGGCGACGTGCCGGGGCTTGAGGAGGTGGCGGTAAT
CGCCGGCGGTGCGCACTACATCCACCTGGAGAAGGCGGAGGAGGTCAGCGAGCACATCTACGATTTCTTCAAAAAGTTCT
GACCAAAGCGCATGCCTTCCAGGTATTTGGAATTGTAATATCCTCTTTTGTCTCTTTGCAATCGTACAGTGCTGTGAGAA
TGC-TTTGCATTGCAACGGGATATAAATGTTCTATACGTTAGTCAGTGATTTATCTATTATATTAATGTGATTGTATAAA
TACTCCATTTCTTTCTTTTTACTCCACGTATAAAATTTGGTCAAAGTCAAACTACACAAAGTTTGACCAAAACTATATCA
AAAAATATGAACATCTACAATACTAAAACTATATAGTATGAAAATACATTTCATGATGCATCTGATAATATTGATTTCAT
ATTGCGAATGTTGATATTTTTTAATATAAAGTTAGTCAAACTTTGCGAAGTTTGATTTGACCAAACTTTATATGCAGACT
AAAAAAACGGAAGGACTACATGTCTATCAAATCCTGCTCGTGATTGTGTAAATAAATGTTTGTTAAATAAATTAAGATGG
ATTTGGTGCAAAAAGTAAGTATATTAAGTTGATTGACTAGGGGAAGGTGTGAAAAAGCATGTGGTGGGACTAAAGAACCG
GTTGGATGAAAAATAATCATGAATGGATGTGGTGGAAGGAGGGGGAACCGGTTGACGAAGCGTTCTGCTGGTAGGAAGTC
GAGTATGCCTCTCTTTTTCTGTAGGCTCGGTTCTTTTCAATTTACTAGGACCCATGTTCAAGAATTCATCCGATTAACCA
GTTAACTTGTCGATCAATCCCTACTCATAGGGTCATTGAGTAGCCGATAAACTGATAAATAGTTGGATTAAGTGATTACC
ATGTCGAAGCCTATTAATTCCCTACTTGCCAGCTAACCGAGCAGTTACCGGTTATTTCCTCAAAAA-TGACTAGGACAAT
GCCCGTGCGTTGCAACGCGATATAAATATTTCGTAAATAAATGTTTGTGCTTTGACTGCCAATATTAATTCAATTGTGTA
AATAAATATTTATCAAATCCTGTATGTGATTTTCCTTATAGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------S
-S--SSS-SS--------S------------------S-------S-S-------SSS-------------------S--
S------------------------S------------------SS---------------S---S--------------
------------------------S---------------S----S-----------S-----S--------S--S----
-------------------------------S----S-------------------------------------------
------------------------SS-----------------SS--------------S-----------S--------
-------S-------S-----------S--------S-----------S---------------S---------S-----
----------------------------------------------------------SS----------S--S---S--
--S--S-----------------S-----------------------S-S------------------------------
---------S--------S--------------------------------S-----SS---------------------
----------------------------------S---S----S-----------S-----S------------S-----
------S--------------------------------------------SSSSSSSS------------S------S-
----S------------------SS-S-----S-----S-----S-------S-S-----SS----S--S----------
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------------------------------------------------------------------S---------S---
---S---------------------------------------S------------------------------------
--------------------------------------S--S--------------------------------------
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--------S-S---------------------------------------------------------------------
---------------S-------S--------------------------------------------------------
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---------------------------S----------------------------------------------------
---------------------------------------------------------------S-------------S--
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---S----------------------S----------S-----------S----------------S-------------
-------------------------------S-------------------------------------S----------
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>forward_270
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----------TCAAGTTCCTGGAGCACGTC--------------------------------------------------
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>reverse_1827
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------------------------------------------------------------------GTGATGGAGGAACT
GGGAGC--------------------------------------------------------------------------
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>forward_798
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----------------------------------------------------------ACACATCAGGAAACGTCGCT--
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>reverse_1830
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---------------------------------------------------------------------ATGGAGGAACT
GGGAGCTGA-----------------------------------------------------------------------
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>forward_926
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--------------------------GACAAGACCATGAGCGAGGT----------------------------------
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>reverse_2147
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------------------------------------------------------------------TAGTGCTGTGGGAA
TGCTTTTG------------------------------------------------------------------------
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