>input_sequence_61585
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--------------------------------------------------ATGTCCAGGTTGATGGCCGCCATGCTTCTC
GGAGGCGCGCGGGTCGCCAGCGCCACGGCGCTCACCGGCAACACTGCCGTGAAGGCCATTCCCAGGCCCTGCTTCCTCGC
TCCCCGGCCGCATGCCGCGAGCTGGAGCCCCATCTGCATGCAGACCGCCCCGAGATCGTCGCAGGTACGTGTATACAGAA
GTTCAGTTTGGTTCCATCTGCCATGCCACGGTTTTTCTCTCGAGGTGCATGCTGACACTCGTGCTCGCCGGCTTTGGTTC
GTGCGTCGCCAGGCGTATAACAACGCGCCGGACGACCGGAGGGAGATTAAGGACAAGTACAGGGGCGCAGCGGAGCAGGC
CAAGGATGCCACCGGCCATGCCAAGGAGAGCGCGAAGGACCACGCGTCGCGCATGGCCGACGAGACCAAGGACAGGGCCG
GGGACGCCGCCGAGAAGGCCTCCCGCATGACGGAGAAGGCGAAGCACGAGACCAAAGAGACGGCAAGCCAGGCCGCGGAC
AAGGCGGGAGAGATGAAGGAGAAGGCCAAGGAGACGGCGGAGGAAGCCGCGGAGAAGGCCTCCCGCATGACGGAGAAGGC
CAAGCACGAGACGAAGGAGACGGCAAGCCAGGCCGCGCACAAGGCGGGGGAGATGAAGGAGAGGGCCAAGGAGACGACGG
GGCAGGCGATGGACAAGGCCAAGGAGACGGCGGGCGCGGCCAAGGAGAAGACGGCGGAGGTGGCGGAGGGCGCCATGGAC
AAGGCCGGCGAGGCCAAGGACAGGGCCGCGGAGGGCACCAGGAGCGCCGGGGAGAAGGTGGCGGAGATGACCAAGGAGGG
CGCGAGCAAGGTGGCCGAGACGGCGCAGGCGCTCAGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCCTGGGAAGCCACAA
AGGAGGCCGCGCAAGGGGTGAAGGAGAAGGTCGGTACAGAGAGCACGGCGGAGGAGCACTCGACGTGGGACGACGTCGAG
GCCGCCACCAAGGAGAGGGACAGGATCGCGCAGGAGGAGCGGAAGAGGCAGGCCAGGGAGAAGGGCGCCGGCTTGCCGTA
G-------------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G427300
AAATCTAATTAAGGAGGAGAGGGCCCCACATTAAAATTAAAGGGGGTGTCTTTTTTGTGGGAAAAGGGATGAGACTAAAA
AGGGGAAGATACACACCCCTGCTTTCATTTCGATGACAATTTCCCCATATGAATAGGATTTTCGCGCAACATTGGCGTGA
AGTTTCACTTGGGTGCATATGCACCCCGTTGGATGGTAAAATCAGAAAAAAAATCATTTTCTTTTCTTAAAGCAACATTG
TTAGAACGTAAAAGTTTTACTAACATGAAAGTTTTTGTGATGAAAAACATTGTGGAGGTTTGAAAAAGCACAAGGATCCT
CAAAAAGGGCAATTTTCGAAAGCACTTTGAAACATTGATTTTTTTTTGTCTAGACCTCCATGGATGTTTTTTCATCACAA
GACTTTACACATATTAGTACAAACGTCTTATAGACAGTTACAGAGGTTGTAAAACATTCCACAAATGTTTATCACGTAAA
AAAAACTCAGAATGTCTTTTGAATTTACGGCTCATTCATTCGAATTTTTTACTGTTCATTCCGGATCCATATGCAACATG
AGCTCGTTTTCGGATTAGTGACGCCGCCTGCCGCTTGGCAAAATCTGTCTTCGCGGTAGGGCACTTGCATGAGACGTGGG
CATTGC----CGCGCGCACGAGCGAATAAACTTCGATCAAGGGCCACGTCGGTACCACACTTGTATGGCCATGGAG---A
CGGTCCAGAACCTTCAGACCGTTCGCGGCACTCCGGCCTACGGGTCACGGACAATAGCACACTCCACGGAGCCACCACGT
GTCGTCACAAGCCGCAACGTGTCCCCGTACGTGTCACCTCCGCCCCTCCCTCGCCTCCGCCTCGAGCTTATAACACTCCG
GTCGGCCTCATCCTCTCCCTTACCGCAAAGCTCACGCAC---ACCACCGTCGTTGCCAACTGATCCAAGATTCCAAGCTT
TCAAGATTCCGCCGCATTGACGGATCGAGTAGTGCTGATAGGGTACGCCCATGTCCAGGTTGATGGCCGCCATGCTTCTC
GGAGGCGCGCGGGTCGCCAGCGCCACGGCGCTCACCGGCAACACTGCCGTGAAGGCCATTCCCAGGCCCTGCTTCCTCGC
TCCCCGGCCGCATGCCGCGAGCTGGAGCCCCATCTGCATGCAGACCGCCCCGAGATCGTCGCAGGTACGTGTATACAGAA
GTTCAGTTTGGTTCCATCTGCCATGCCACGGTTTTTCTCTCGAGGTGCATGCTGACACTCGTGCTCGCCGGCTTTGGTTC
GTGCGTCGCCAGGCGTATAACAACGCGCCGGACGACCGGAGGGAGATTAAGGACAAGTACAGGGGCGCAGCGGAGCAGGC
CAAGGATGCCACCGGCCATGCCAAGGAGAGCGCGAAGGACCACGCGTCGCGCATGGCCGACGAGACCAAGGACAGGGCCG
GGGACGCCGCCGAGAAGGCCTCCCGCATGACGGAGAAGGCGAAGCACGAGACCAAAGAGACGGCAAGCCAGGCCGCGGAC
AAGGCGGGAGAGATGAAGGAGAAGGCCAAGGAGACGGCGGAGGAAGCCGCGGAGAAGGCCTCCCGCATGACGGAGAAGGC
CAAGCACGAGACGAAGGAGACGGCAAGCCAGGCCGCGCACAAGGCGGGGGAGATGAAGGAGAGGGCCAAGGAGACGACGG
GGCAGGCGATGGACAAGGCCAAGGAGACGGCGGGCGCGGCCAAGGAGAAGACGGCGGAGGTGGCGGAGGGCGCCATGGAC
AAGGCCGGCGAGGCCAAGGACAGGGCCGCGGAGGGCACCAGGAGCGCCGGGGAGAAGGTGGCGGAGATGACCAAGGAGGG
CGCGAGCAAGGTGGCCGAGACGGCGCAGGCGCTCAGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCCTGGGAAGCCACAA
AGGAGGCCGCGCAAGGGGTGAAGGAGAAGGTCGGTACAGAGAGCACGGCGGAGGAGCACTCGACGTGGGACGACGTCGAG
GCCGCCACCAAGGAGAGGGACAGGATCGCGCAGGAGGAGCGGAAGAGGCAGGCCAGGGAGAAGGGCGCCGGCTTGCCGTA
GACGAAGATGGCTGTCCGGCTGGACATCTCCACGCGTCTAGTGGCCTCTGTTTCGAGTTGAATTTTAGTTTTCAGCCTC-
-TTCGGTTTACATGTTGAATAATGCTTTGGCAAACA-GATGCGCCGATGCCTCCCCTGAGATGAAAATATTGGAGCAATC
GTGTAGAAAAAACAAGAAA--TTTCTTTTGAGCTCTGCAATATGTGCTGTCTCTTTTTTTTTTCCGATGGAGAATGTGTA
CCGTCTCTGATGGAGGATGTCCAATACTAGTTGAACCACTAGTCGTCTGTCTTTGGAACTCTGCGATACTGCCATTGATC
TTCAGTTTTATCTCTCAGCGGCAAAGATCTTCAGTTTTATCTCTCATCGACAAAATCTTCAGTTTTTTTATTGACAGACA
GAAAAATCATGGCTTCAGTTTTTTTATTGACAGAGGAATATCATCGTTTGCATGTCCGTGTTAGTAGTTGTTGGAATTTT
GCTAATAGGCCTTTGTTTCAAAGCCCAATTAATTTGTCTATTCATGCGTGGAGTGAGTAAGACTAGAGTTTAGTGCTACG
GAAGTTAAGAAAGACTAGAGTTTAGTGCTACGGAAGTTAAGAAAGACTTGCACCTTAAGGAGAACTCTTCTACAACTTGT
ACGAAGATGAGACGTTCTCATCGCTTGCCTTGCCACGCCTCGTCACGACGCTCGGACGTGGGGTTTACTACTCTCACAAC
CTGACCCGCATTATATAGTCAGTTAGACGTCTGCTTTAGCCGTCGCCGTTTTATATGGTTTTGCACCATCGTTTCAGATC
ATTGCGTCGTCAAGCAAACCTTCTTCATCCTTTTTTTCGGCGTGCACCGGAAGAAGGGACAGTAAGCCTCCGGAACCCCG
CCTGTAATCCTGTACGGGAGAGGGATGATCAGGTTTTGGGGGAGCGCACCTGCGCGATTGCTGGCAGCGACGACTTCGCG
AACGACAACTTTTTCTCCGACCTTGGTAATCCCATCCTCGACGACA
>chr2B_551
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----------------------------------------------------------------------ATGGAACATG
AGCTCGTTTTAGGATTGGGGACGCTGCCTGCCGCTTGGCAAAATCTATCTTCGCGGTAGGGCACTTGCATGAGACGTGGG
CATTGC----CGCGCGCACGAGCGAATAAACTTCGATCAAGGGCCACGTCCGTACCACACTTGTATGGCCATAGAG---A
CGGTCTAGAACTTTCAGACCGTTCGCGGCACTCCGGCCTACGGGTCACGGACAGCAGCACACTCCACGGAGCCACCACGT
GTCGTCACAAGCCGCAACGTGTCCCCGTACGTGTCACCTCTGCCCCTTCCTCGCCTCCACCTCGAGCTTATAACACTCCG
GTCGGCCTCATCCTCTCCCTTACCGCAAGGCTCACACAC---ACCACCGTCGTTGCCAACTGATCCAAGATTCCAAGCTT
TCAAGATTTCGCCGCATTGACTGATCGAGCAGTGCTGATAGAGTACATCCATGTCCAGGTTGATGGCCGCCATGCTTCTT
GGAGGCGCGCGGGTCGCCAGCGCCACGGCGCTCACCGGCAACACTGCCGTGAAGGCCATTCCTAAGCCTTGCTTCCTCGC
TCCCCGGCCGCATGCCGCGAACTGGAGCCCCATCTGCTTGCAGACCGCCCCGAGATCGTCGCAGGTAAGTATAC---GAA
GTTCAGTTTGGCTCG-TCTGCCATGCCACGATTTTTCTCTGGAGGTGCATGCTGACATGCGTGCTCGCCGGCTTTGGTTC
GTGCGTCGGCAGGCGTATAACAACTCGCCGGACGACCGGAGGGAGATCAAGGACAAGTACAGGGGCGCGGCGGAGCAGGC
CAAGGACGCCACCGGCCATGCCAAGGAGAGCGCGAAGGACCAGGCGTCGCGCATGGCCGACGAGACCAAGGGCAGGGCCG
GCGACGCCGCCGAGAAGGCCTCCCGCATGACGGACAAGGCGAAGCACGAGACCAAGGAGACGGCAAGCCAGGCCGCGGAC
AAGGCGGGGGAGATGAAGGATAGGGCCAAGGAGACGGCGGAGGAAGCCGCAGAGAGGGCCTCCCGCATGACGGAGAAGGC
CAAGCACGAGACCAAGGAGACGGCAAGCCAGGCCGCGGACAAGGCGGGGGAAATGAAGGAGAGGGCCAAGGAGACGACGG
GGCAGGCGATCGACAAGGCCAAGGAGACGGCGGGCGCGGCCAAGGAGAAGACCGCGGAGGTGGCGGAGGGCGCCATGGAC
AAGGCCGGCGAGGCCAAGGACAGGGCCGCGGAGGGCACCAGGAGCGCCGGGGAGAAGGTGGCGGAGATGACCAAGGAGGG
CGCGAGCAAGGTGGCCGAGACAGCGCAGGCGCTCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCCTGGGAAGCCACAA
AGGAAGCCGCGCAAGGGGTGAAGGAGAAGGTCGGTTCAGAGAGCACGGCGGAGGAGCACTCGACGTGGGACGACGTCGAG
GCGGCGACCAAGGAGAGGGACAGGATCGCGCAGGAGGAGCGGAAGAGGCAGGCCAGGGAGAAGGGCGCCGGCTTGCCGTA
GAAGAAGATGGCTGTCTGGCTTGACATCTGCACGCGTCTACTGGCCTCTGTTTCGAGTTGAATTTTAGTTTTCAGCCTC-
-TTCGGTTTACATGTTGAATAATGCTTTGGTAAACA-GATGCGCCGATGCCTCCCCCGAGATAAAAATATTGGAGCGATC
TTGTAGAAAAAACAAGA----TTTCTTTTGAGCTCTGCAATGTCTCCTCTCTCT--------------------------
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>chr2D_551
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----------------------------------------------------------------------ATGGAACATG
AGCTCGTTTTAGGATTGGTGACGCTGCCTGCCGGTTGGCAAAATCCGTCTTCGCGGTAGGGCACTTGCATCAGACGTGGG
CATTGCCGCGCGCGCGCACGAGCGAATAAACTTCGATCAAGGGCCACGTCCGTACCACACTTGTATGGCCATAGAGCAGA
CGGTCCAGAACCTTCAGACCGTTCGCGGCACTCCGGCCTAC-GGTCACGGACAGCAGCACACTCCACGGAGCCACCACGT
GTCGTCACAAGCCGCAACGTGTCCCCGTACGTGTCACGTCCGCCCCTCCCTCGCCTCCGCCTCGAGCTTATAACACTCCG
GTCGGCCTCATCCTCTCCCTTACCGCAAAGCTCACACGCACAACCACCATAGTTGACAGCTGATCCAAGACTTAAAGCTT
GCAAGATTTCGCCGCATTGACGGATCGAGCCGTCCTGACAGAGTACATCCATGTCCAGGTTGATGGCCGCCATGCTTCTC
GGAGGAGCGCGGGTCGCCAGCGCCACGGCGCTCACCGGAAACACTGCCGTGAAGGCCATTCCCAGGCCCTGCTTCCTCGC
TCCCCGCCCGCATGCCGCGAGCTGGAGCCCCATCTGCATGCAGACCGCCCCGAGATCGTCGCAGGTACGTGTATACAGAA
GTTCAGTTT-GCTCG-TCTGCCATGCCACGTTTTTTCTGTTGAGGTGCATGCTGACATGCGTGCTCGCCGGCTTTGGTTC
GTGCGTCGGCAGGCGTATAACAACTCGCCGGACGACCGGAGGGAGATCAAGGACAAGTACAGGGGCGCGGCGGAGCAGGC
CAAGGATGCCACCGGCCATGCCAAGGAGAGCGCGAAGGACCAGGCGTCGCGCATGGCCGATGAGACCAAGGACAAGGCCG
GGGACGCCGCCGAGAAGGCCTCCCGCATGACGGAGAAGGCGAACCACGAGACTAAGGAGACGGCAAACCAGGCCGCGGAC
AAGGCGGGGGAGATGAAGGAGAGGGCCAAGGAGACGGCGGAGGAAGCCGCAGAGAGGGCCTCCCGCATGACGGAGAAGGC
CAAGCACGAGACCAAGGAGACGGCAAGCCAGGCCGCGGACAAGGCGGGGGAGATGAAGGAGAGGGCTAAGGAGACGACGG
GGCAGGCGATCGACAAGGCCAAGGAGACGGCGGGCGCGGCCAAGGAGAAGACCGCGGAGGTGGCGGAGGGCGCCATGGAC
AAGGCCGGCGAGGCCAAGGACAGGGCCGCGGAGGGCACCAGGAGCGCCGGGGAGAAGGTTGCGGAGATGACCAAGGAGGG
CGCGAGCAAGGTGGCGGAGACCGCGCAGGTGCTCGGCGAGAAGGCGAAGCAGGCGGCGCAGGGCGCCTGGGAAGCCACAA
AGGAGGCCGCGCAAGGGGTGAAGGAGAAGGTCGGTTCAGAGAGCACGGCGGAGGAGCACTCAACGTGGGACGACGTCGAG
GCCGCCACCAAGGAGAGGGACAGGATCGCGCAGGAGGAGCGGAAGAGGCAGGCCAGGGAGAAGGGCGCCGGCTTGCCGTA
GACGAAGATGGCTGTCTGGCTTGACATCTGCACGCGTCTGGTGGCCACTGTTTCGAGTTGAATTTTAGTTTTCAGGCTCC
TTTCAGTTTACATGTTGAATAATGCTTTGGTAAACAAGATGCGCCGATGCCTCTACTGAGATGAAAATATTGGAGCAATC
GTGTAGAAAAAACAAGAAAATTTTCTTTTGAGCTCTGCAATGTGTGCTGTCTCT--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------
----------S-----S-------S-------------------------------------------------------
--------------------------------------------------S---------------------S-------
-----------------------------------------------------SS-------------------------
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-----------------------------------S--------------------------------------------
--------S--------------------S-----------S----SS--------------------------------
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-----------S--SS--------------S---------S----------------SS---------------------
--------S---------------S----------------------S--------------------S-----------
------------------------------------------S-------------------------------------
-------------------------------------------------------S------------------------
--------S-------------S---------------------------S----S------------------------
------------S------------------------S------------------------------------------
----------S-----------------------------------------S---------------------------
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---------------------S------------S---------------------------------------------
-----------------------------------S--------------------------------------------
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----------------S----S-------S--------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_102
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--GGGAAGATACACACCCCTGC----------------------------------------------------------
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>reverse_2102
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---------------------GGACATCTCCACGCGTCTAG---------------------------------------
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