>input_sequence_61550
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----------------------------------------ATGGGATCTGTATTCTCTTCCGTTGCCGCAGAGAACAGAG
AGCGATCAGAAGAGTAAGTTAAATTCTTCTACAATTCCGGATTGGTATCCCTGGCCTCGCGTAATATGTTTCTTATGTAT
ATGCGTTAATTGCAATTGCAGAGAGCGAGATGCCTCCGTCATTCACCATGCTCGTTGTGCCCTCCTCCACTACAACTCCA
AGAACCCGGTACATAACTGATCCGATCATTATCTGAACAATCAAAAATCACTGAAAAATGCTTATCACATCTATTGTTGA
AATCGAGTAGTAATTTTCTATTCTATTGCGGGAAAAACATTTAACTTTTCATTGTCAAGAGACAGTAAGTTAACTAGTAG
AGGGAAAACCCAAATACCCACAATTTTATTGTTTTCTGGTTAACCCAACTGTCTCCG-TTCTGGCAACTAATTTTCAGGG
TGCTGAATTCGACCTTGTCAAACCTTTGATGAACATGGCCGTCATATTCAGAGGCGAGACATGGCACCACGTCAGCTTTT
GGGCTCGCAGGAGGGGCGCTCCGCCTGAGACCCCCGTGCGGCAATTCTTCGGGGAGCTGCGCTACAAGTACATCTGTGGC
GATGATGACAAGGCTGTCGAAATACAGGGCTGCCGAGTGGTTGTCGAGACATGCGCTATCGTCAGTAAGT----CCTCCT
CCGATCCTCACTAATCTCTTTTGGTACTTGGTTGCGTAACCATGATTAACTGACTTTT---TGCTTCATTCTCATACTTA
CACAGATAAGATATCTACATTTCAGACGCAGCCACCCACCCGCAAGAGTATGTGTGTACATTCTTTTGGAGCGGCTATAT
ATCCTTGTACAGTTATTTGAATACTGCATGTGGGTGATTTCATAACATGAATACTAACTTATCTCTTTTTCTTTTAACAG
AAAAGAAACCTCGCAGGAGTGTGTGTATACTTTGCCCCCGTAGCTTTGAGATCATTCATTCCAAAAAG-GGGAAATTCAT
TTGCGGAAAGGAAGAAGGACACGAGAAGGAGTTTATCCGGTTGAACAATATGCTTGAGAAGCCATTCACATGTACAGCCT
AG------------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G067500
AGGTGGTGGTGCTTCTTCGCCCTAGATAGTCTGTATTAGAGGTGATCACAGGTAATATATTGTCAATCATGGCATTTTTT
AGTCTATGTATGGTAAGATATAGAACTTATCCAACAAAGTTTGCCATGGCCAATGGTAAATATTGTCATGCATCAAGGAA
ATTGTAGTGTATGGATCATGGCATATTTTGTAGTCTATGGATCATTTTCCAACAATGTTTCCATGTCCCATGGCAAATTT
TATTATTCAGAGCATGACACTTATAATTAAAACACCATGGCAAATTTTAACTTGCATTTTTTTTTGCCATGGCAATTATG
TTCATAATTTGTGCTACTTGCCTACTTCACATACATGGCAAATTCCTCACACACAAACATGACAACTTTATTTAAAATAA
CATAGATCTTTTCTTTGTTCATTTTTTAATTCCAACCTTTTGTATTTTTTTCACACATGGCAATTTTCGCATACATTATA
TGGAAACTTAATTAAAAATAACATGGCAATTTTTACTGTGAATTTGCCATGGCAATTTAATTTTTGTATGTATGATGGGA
ATTGCCATGTCTTGTTTCTTTTGGGTTATAAAAAAAATCTAAACGGGAGTAGTATTTCTATTCAGGAAATGGGGCGGGGG
AAAGCAGCGTCACCGTCGGGCGATCGGTTTCTTCACCTCTTTGCTGCAGATCGACGGGGTTTGCACGAAACGCAGTCTTT
TTTTCTTTTTTCTTTTTTCTTTTTTCTTTCTTTTTTTGGCGGTGCACCTGTCGGTTATCTCCTGCTCCCGTTTGCGGCGG
TATCCTGCAGAGTTACAGCCAAACCTACAAATTCGACTCGGATCGGATTGGGAGAATTTTTCGTCGCCCCGGCGGCCGCT
CCATATAGTTGCAGCGATCTCATATGAAGCCCTCGAATCAAACAAGCCAAGAGTGAGGAAGCCAAGGGGCAAGGCTGGTA
ATCAAAGAGGGGAAAGTCAAGGCAGATTCTCAAGACATAGATGGGATCTGTATTCTCTTCCGTTGCCGCAGAGAACAGAG
AGCGATCAGAAGAGTAAGTTAAATTCTTCTACAATTCCGGATTGGTATCCCTGGCCTCGCGTAATATGTTTCTTATGTAT
ATGCGTTAATTGCAATTGCAGAGAGCGAGATGCCTCCGTCATTCACCATGCTCGTTGTGCCCTCCTCCACTACAACTCCA
AGAACCCGGTACATAACTGATCCGATCATTATCTGAACAATCAAAAATCACTGAAAAATGCTTATCACATCTATTGTTGA
AATCGAGTAGTAATTTTCTATTCTATTGCGGGAAAAACATTTAACTTTTCATTGTCAAGAGACAGTAAGTTAACTAGTAG
AGGGAAAACCCAAATACCCACAATTTTATTGTTTTCTGGTTAACCCAACTGTCTCCG-TTCTGGCAACTAATTTTCAGGG
TGCTGAATTCGACCTTGTCAAACCTTTGATGAACATGGCCGTCATATTCAGAGGCGAGACATGGCACCACGTCAGCTTTT
GGGCTCGCAGGAGGGGCGCTCCGCCTGAGACCCCCGTGCGGCAATTCTTCGGGGAGCTGCGCTACAAGTACATCTGTGGC
GATGATGACAAGGCTGTCGAAATACAGGGCTGCCGAGTGGTTGTCGAGACATGCGCTATCGTCAGTAAGT----CCTCCT
CCGATCCTCACTAATCTCTTTTGGTACTTGGTTGCGTAACCATGATTAACTGACTTTT---TGCTTCATTCTCATACTTA
CACAGATAAGATATCTACATTTCAGACGCAGCCACCCACCCGCAAGAGTATGTGTGTACATTCTTTTGGAGCGGCTATAT
ATCCTTGTACAGTTATTTGAATACTGCATGTGGGTGATTTCATAACATGAATACTAACTTATCTCTTTTTCTTTTAACAG
AAAAGAAACCTCGCAGGAGTGTGTGTATACTTTGCCCCCGTAGCTTTGAGATCATTCATTCCAAAAAG-GGGAAATTCAT
TTGCGGAAAGGAAGAAGGACACGAGAAGGAGTTTATCCGGTTGAACAATATGCTTGAGAAGCCATTCACATGTACAGCCT
AGCTAACCATGATCTTCAATCCATCCAAAGCACCTGTACTAACGTGTCGATGTATCATTAGCAACCAAAAAAAA----TA
CCGTGATCACATTCAAACTTTGTAATTTTGTCCCTCTTTAGTGCTTCTATTCATACGCTAGTAAATATTCCGATGATAAA
ATAACGTTTTGTTGGAATTATTGGTTCTAGCCCATTTATTAATTCAGATTTTTTTTTCAATAATTTCTAGTAAACCCAAG
AGGCCCATGTGGTCCGTTAATGCATGACAAGAGGGTGTGGAAAATTTAGTCCCATCACGTTAGTGAAGAATGGCTGTGAC
CAACTTAGAAGAGAAGTTATTCCACATACAACTAAGAGTTTGAGAAGAAAGCACATACATATGCGCTCCTCCTCCGCCGC
CCGCCTCGCGCGTGTATCGTGTTTCGTTGCCGCACCGCGCTAGTACCTATGCCACATGTATGTGTTGCTTCATTTTTGTG
ACGCAAGAAAGAAGTTGAAACGTTTGATCTACTAGTGGGAGACGAATCTGAGGGCCTGTTTGGTTCCAAATAAGTCACCA
ACTTATAAGTCGAAAAGTGAAAAAAGTGACTTATTTTGCCAAAAGGACCCAACTTATAAGTCATAAGTTGCTCCATCCCA
ACTTAAAACTTATAAGTCACCCCCTTTTGCGTGGGTCCCACCACCTACATGATATGGATTGGTGTGGGAATGTGTGGTCA
GGTGACTTATAAGTCAGGTGACAACCAAACAGGCGTGACTTATAAGTCACTGGTTTTAAGTCACCTGACTTATAAGTTGG
TGACTTATTTGGAACCAAACAGGCCCTGAATGGACTCAGATGATTTTCTCTTCGCGTTTGTTTCTCTTCCCCATTGTCGA
ACGTCGACATTCCCAATGACGAGTTCTTTAATGACAATTTCATCCCCGACATCGACCACCTCCTTAGCGACATGACGAAC
GACACACCCTCATCTCCTTCCGCTGCTCCATATGTCATCTTATCCC
>chr5B_494
CTGTCTCCGTTTCTGGCATCCAATATTCTCAGGGTGCCGAGTTCGATCTTGTCAAACCTTTGATGAACATGGCCGTCATA
TTTAGAGGCGAGACATGGCACCACGTCAGCTTTTGGGGTCCCCGGAGGGGTGCTCCGCCTGAGAATCCCGTGCGGCAATT
CTCCGGGGAGCTGCGCTACAGAAGATAATTCGTGTAGATCCGTTTTCCATACGAGGCAGTCTTAGGAGCCTAATCAGCCG
AATAGTGTTCTGGATACAAAATCTCAGTACTTCGAACATAACTTCGACCTTAGAGATGAGACCGGATGGATATGGCCAAA
ATATCAAAGTTTCTCATTTGACGATACGGAACTTTGTTACATTGAGCACTTTTCCATTTGAGGTTTTCTTAATTGTGCTT
TTGACCATGCCAAAATCTGGTGTCAACAAAAATAC---------------------------------------------
---------------------CATGGCAATTTTTACTGTGAATTTGCCATGGCAATTTAATTTTTGTATGTATGATGGGA
ATTGCCATGTCTTGTTTCTTTTGGGTTATAAAAAAAATCTAAACGGGAGTAGTATTTCTATTCAGGAAATGGGGCGGGGG
AAAGCAGCGTCACCGTCGGGCGATCGGTTTCTTCACCTCTTTGCTGCAGATCGACGGGGTTTGCACGAAACGCAGTCTTT
TTTTCTTTTTTCTTTTTTCTTTTTTCTTTCTTTTTTTGGCGGTGCACCTGTCGGTTATCTCCTGCTCCCGTTTGCGGCGG
TATCCTGCAGAGTTACAGCCAAACCTACAAATTCGACTCGGATCGGATTGGGAGAATTTTTCGTCGCCCCGGCGGCCGCT
CCATATAGTTGCAGCGATCTCATATGAAGCCCTCGAATCAAACAAGCCAAGAGTGAGGAAGCCAAGGGGCAAGGCTGGTA
ATCAAAGAGGGGAAAGTCAAGGCAGATTCTCAAGACATAGATGGGATCTGTATTCTCTTCCGTTGCCGCAGAGAACAGAG
AGCGATCAGAAGAGTAAGTTAAATTCTTCTACAATTCCGGATTGGTATCCCTGGCCTCGCGTAATATGTTTCTTATGTAT
ATGCGTTAATTGCAATTGCAGAGAGCGAGATGCCTCCGTCATTCACCATGCTCGTTGTGCCCTCCTCCACTACAACTCCA
AGAACCCGGTACATAACTGATCCGATCATTATCTGAACAATCAAAAATCACTGAAAAATGCTTATCACATCTATTGTTGA
AATCGAGTAGTAATTTTCTATTCTATTGCGGGAAAAACATTTAACTTTTCATTGTCAAGAGACAGTAAGTTAACTAGTAG
AGGGAAAACCCAAATACCCACAATTTTATTGTTTTCTGGTTAACCCAACTGTCTCCG-TTCTGGCAACTAATTTTCAGGG
TGCTGAATTCGACCTTGTCAAACCTTTGATGAACATGGCCGTCATATTCAGAGGCGAGACATGGCACCACGTCAGCTTTT
GGGCTCGCAGGAGGGGCGCTCCGCCTGAGACCCCCGTGCGGCAATTCTTCGGGGAGCTGCGCTACAAGTACATCTGTGGC
GATGATGACAAGGCTGTCGAAATACAGGGCTGCCGAGTGGTTGTCGAGACATGCGCTATCGTCAGTAAGT----CCTCCT
CCGATCCTCACTAATCTCTTTTGGTACTTGGTTGCGTAACCATGATTAACTGACTTTT---TGCTTCATTCTCATACTTA
CACAGATAAGATATCTACATTTCAGACGCAGCCACCCACCCGCAAGAGTATGTGTGTACATTCTTTTGGAGCGGCTATAT
ATCCTTGTACAGTTATTTGAATACTGCATGTGGGTGATTTCATAACATGAATACTAACTTATCTCTTTTTCTTTTAACAG
AAAAGAAACCTCGCAGGAGTGTGTGTATACTTTGCCCCCGTAGCTTTGAGATCATTCATTCCAAAAAG-GGGAAATTCAT
TTGCGGAAAGGAAGAAGGACACGAGAAGGAGTTTATCCGGTTGAACAATATGCTTGAGAAGCCATTCACATGTACAGCCT
AGCTAACCATGATCTTCAATCCATCCAAAGCACCTGTACTAACGTGTCGATGTATCATTAGCAACCAAAAAAAA----TA
CCGTGATCACATTCAAACTTTGTAATTTTGTCCCTCTTTAGTGCTTCTATTCATACGCTAGTAAATATTCCGATGATAAA
ATAACGTTTTGTTGGAATTATTGGTTCTAGCCCATTTATTAATTCAGATTTTTTTTTCAATAATTTCTAGTAAACCCAAG
AGGCCCATGTGGTCCGTTAATGCATGACAAGAGGGTGTGGAAAATTTAGTCCCATCACGTTAGTGAAGAATGGCTGTGAC
CAACTTAGAAGAGAAGTTATTCCACATACAACTAAGAGTTTGAGAAGAAAGCACATACATATGCGCTCCTCCTCCGCCGC
CCGCCTCGCGCGTGTATCGTGTTTCGTTGCCGCACCGCGCTAGTACCTATGCCACATGTATGTGTTGCTTCATTTTTGTG
ACGCAAGAAAGAAGTTGAAACGTTTGATCTACTAGTGGGAGACGAATCTGAGGGCCTGTTTGGTTCCAAATAAGTCACCA
ACTTATAAGTCGAAAAGTGAAAAAAGTGACTTATTTTGCCAAAAGGACCCAACTTATAAGTCATAAGTTGCTCCATCCCA
ACTTAAAACTTATAAGTCACCCCCTTTTGCGTGGGTCCCACCACCTACATGATATGGATTGGTGTGGGAATGTGTGGTCA
GGTGACTTATAAGTCAGGTGACAACCAAACAGGCGTGACTTATAAGTCACTGGTTTTAAGTCACCTGACCTATAAGTTGA
TGACTTATTTGGAACCAAACAAGCCCTGAATGGACTCAGATGATTTTCTCTTCATGTTTGTTTCTCTTCCCCATTGTCGA
ACGTCGACATTCCCAACGATGAGTTCTTCAATGACAATTTCATCCCCGACATCGACCACCTCCTTAGCGACATGACGAAC
GACACACCCGCATCTCCTTCCGCTGCTCCATATGTCATCTTATCCC
>chr5A_1202
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-GAACCCGGTACATAACTGATCCGATCATTATCTGGAAAACCAAAAATCAATGAAAAATACTCGTCACATCTATTGTCGA
AATCGAGACGAACACAACT-------------------------------------------------------------
-------------ATACCCACAATTTTATAGTTTTCTGATTAACCGAGCTGTCTCCGTTTCTTGCAACTAATTCCCAGGG
TGCTGAGTTCGATCTTGTCAAACCTTTGATGAACATGCCCGTCATATTCAGAGGCGAGACATGGCACCACGTCAGCTTTT
GGGCTCGCAGGAGGGGCGCTCCCCCTGAGACTCCCGTGTGGCAATTCTTCGGGGAGCTGCGCTACAAGTACATCTGTGGC
GATGATGACAAGGCTGTCGAAATACAGGGCAGCCGAACAGTTGTCCAGACATGCACTATC----GTCAGTAAGTCCTCCT
CC-----GCACTAATCTGTTTTGGTACTTGGTTGCGTAA--------------CTGATTTATGCTTCATTCTCATACTTA
CACAGATAAGATATCTACGTCTCAGACGCAGCCACCCACCCGCAAGAGTATGTGTGTACATTCTTTTTGAGCGGCTATAT
ATCCTTGTACAGTTATTTGAATACTGTATGTGGGTGATTTCATAACATGAATACTAATTTATCTTTTTTTGTTTTGACAG
AAAAGAAACCTTGCAGGAGTGTGTGTGTACTTTGCCCTCATAGCTTTGAGATCATTCATCCCAAAAAATGGGAAGTTTGT
GTGCGGAAAGGAACAAGGACACGAGAAGGAGTTTATCCGGTTGAACAATATGCTT-------------------------
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>chr5D_1400
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---------------------------------------TTAACCGAGCTGTCTCCGTTTCTGGCAACTAATATTCAGGG
TGCCGAGTTCGATCTTGTCAAACCTTTGATGAACATGGCCGTCATATTCAGAGGCGAGACATGGCACCACGTCAGCTTTT
GGGCTCGCAGGAGGGGCGCTCCGCCTGAGACCCCCGTGCGGCAATTCTTCGGGGAGCTGCGCTACATGTACATCTGTGGC
GATGATGACAAGTCCGTCGAAATACAGGGCTGCCGAGTGGTTGTCGAGACATGCACTATC----GTAAGT----CCTCCT
CC-----TCACTAATCTCTTTTGGTACTTGGTTGCGTAACCATGATTAATTAACTGATTTATGCTTCATTCTCATACTTA
CACAGATAAGATATCTACGTTCCAGACGCAGCCACCCACCCGCAAGAGTATGTGTGCACATTCTTTTGGAGCGGCTATAT
ATCCTTGTATAGTTATTTGATTATTACATGTGGGTGATTTCATAACATGAATACTAATTTATCTCTTTTTCTTTTGACAG
AAAAGAAACCTCGCAGGAGTGTGTGTGTACTTTGCCCTCGTAGCTTTGAGATCATTCATCCCAAAAA-TGGGAAGTTTGT
GTGCGGAAAG---GAAGGACACGAGAAGGAGTTTATCCGGTTGAACAATATGCTTGAGAAGCCATTCACATGTACAGCCT
AGCTAACCATGATCTTCAATCCTTCCAAAGCACCTGTACTAACGTGTCCATGTATCATCAGCAACCAATTTTTTTTTTTA
CCGTGATCACATTCAAACTTTGTAATTGTGTCCCTCCTTAATGCTTCTATTCATACGCTAGTAAATATTCCAATGATAAA
AGAACATTTTGTTGGAATTATTGAGCCTTGCCCATTTAATAGTTCATTTTTCTCC--CAATGATTTCTAGTAAATCCAGG
AGGCCCATGTGGCCCATTCATGCATGATAAGAGAGTGTGGAAAATTTAGTCCTACCACGTTAGTGGAGAATGAATGAAAC
CAACTT--------------------------------------------------------------------------
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>SNPs
SS--SSSS--SSS-SSSSS--SSSSS-SSSSS-SSSSS---S-SSSSSSS-SS--SSSS---SSS-S------SS-SS-S
SS-SS-S-SSS-SS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSS-S--SSSS-SSSSSSS-SSS--SS-SSSSSSSSSS
S-SSSS-SSSS--SSSS-SS-S-S--SS-SSSSSSSSSSSSSSS--SSSS-SS-SSSSS--SSS-SSS-S-SSSS-SSSS
S--SS-SSSSS-S--SSS-SS-S-S-S--SSS-SSSSSSSSSSSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSS-SS
S-SSS--SS-S-SSS-S---S-S-SSSSSS-SSSSSSSSS-S-SSSSSSSSSS-S-SSSSSSSSSS-S-SSS-SSSSSSS
SSS-SSSSSSSSSSS-S-SSSS-SSSS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
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---------------------------------------------------------------------S---------S
---------------------S-------------------------------SS-------------------------
----------------S--S--------S---------------------------------------------------
---------S------------------------------------
>forward_235
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-------------------------------------------------------TGTTTCCATGTCCCATGGCA-----
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>reverse_2880
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-------------------------------------------------------------------------------G
TGACTTATTTGGAACCAAACAGG---------------------------------------------------------
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