>input_sequence_61491
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----------------------------------------AACGAATTGTCGAGCGAGTACGCCATGAAGACTTCCAAGA
AGCAGAAGGAGGCGCCGCCGACCCCCGAGCTGCCGGACTTCACTGGCGAGTTTCGCTCGGTTCACTGCTTCTGCCACTGT
GACAGCCTGGTGCTCGCCGCCACGGACACCAAGGTGTACCTATTCAACCCCACAATCAAGGACGTCGTCACGCTGCCGGA
CAGCAGCCGCAACAAGGTGCCCGGCTACACCGAAAGGCCCATTGGGTTCGGCCGTGATCCTCGCACTGGCATGTACAAGG
TTGTCCGGTCCTTATTCGGTTCGACAGACTGTAAAACTGGGATCGTCAGCATGGGGATGGAGGTGTGTACCGTGGGCAGC
CCTGCTCCTCCTCAATGGAGGGAAATCGCGGGGGATCAGCCATATGCCCCTGTGTCATCGGTGCCCGCGCAATCTGTCAA
GGGGTGTGTGTACTGGATAGTCG---------ACGATACCAACTTCGAGCCGCGCTCGCGTGGCCTCCTACGCTTCGACT
TGGTCGACGAGGCATTCAACTTCATCAGTTTGCCTTCTGATCTGTCGGACCTCGGAGATGACGACAATGAC---------
---AATGAACACTTCAACTTGAGTGTGTTGCACGGGGAGTTGTCTCTAACCGGCTATCGCGTCAATGAGCCTAACGACGT
GCATCGGCTGGTGGTGGTCTGGGCGCTCATGGAAGA---CGGGGCAAGCTCCGTGTGGGAACCGCGTCATACGTTGTATG
TCATGGAACCGTGCCACCCAATCGCTTTTCTTCCGGGCACGTTGATGCTACGGTTCAATCGCAAGCTCTGCCTCTACGAT
CTGCAGTCACGTGAGCTGGCAAATGCTTGTGAGCTGATCAAGATGAGATACCGGCGTCATGGGTCAGCCGAACTTGAGCC
TGCTTGGAAGCATGTGTACTTCTGCAACGTCATACCCTACATGGAAAGTCTTGTTCCAGTCGGTGCTCACATGGCCTGAC
TCTGATAGCTTTTCTAGCT----------------------------------------TTTTTTTAGAAACACCTGTAA
TTGTATTCATACTCATAACAATTGCATGTAAAATGATTTGGATCTAAGATAAA---AATAAT------------------
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--------
>chr3D_1_TraesCS3D01G042200
CGCCGGAACCACCCGCCGTCGAGGAGAGGTACGCGTTGATTGGCGTTCTCTGCGAGTGGGTGAGCCCGCTGGCCGTTGCT
CTGGGCGCGACGCTGAAGTGGGAGGCGGCGTACCTCGAGCACCGAAGGCAGTGCATGCTGGCGGAGGAGCGGGCTGACGG
GGAGCGCCAAATGCACGTCGAACGCGAGGAGGAGGAGCGCCATGCCCGATGGGCACTGGAGGAAGAGGAGAAGCACTGGG
AGTAGGAGGAGGAGGAGTGCCGGGAGCAAGAGGAGGAGCGTGTGTGCCACGCAGCAGAGGCTGTGCCGCCGCCACACTTC
GTCGACCTCACCGGCTCTGAGGACGATGGCGATGCCTAGGGCAGCGTCCTAGGTGGGCGGCTACGTGCCGTTTTATTTTA
TTATTTTTTAAATTTATGTTTAGTTATGTTTAAGTGGACTTTGGCCCGCGGTTGACGGACCGTTTTAATGTTTAATTTGT
GCGCATGTTTGAAATTATTTTTAAGTCCGCGCGAAAAATGTGTCGGTCACCCTTGGACGTACAAGCCGAACCAAACAAAA
AAACGGACACACCCGTTGGCTCAACTGATCCAAATAGACAAAAAAAAAAGACAAAATTTGCGTCCGATTTGCATGGTCGC
GTTGAGTTGCTCCTAAGCATTAATTAACCGTCCAAATGAATGGGTGAGTACCGCGAATCACCGGGAGAAGTCACCGCGGG
TCGGCCGAGGGACCGAACCTACGAGCGTCCTCGACGAGGTTTGGTTTACATCTGTCCACATCCAACACGTAGCTATGGAA
GTGTCCGCCTTCGAGACTTTTTGTTGACATCTAAGTGAATGAATTAAGCATAAAAAAAGAAAAAAGAGAAAGAAATTATT
CACACGAATCTCAATGTAAGATCAATGGCATATGATTTGGATGTGCAATACTTATGGCACATCTAGATGTGCTTTAGCAA
AACTGATATATATATATACACATGTGTATCCATGAGTAACAACGAATTGTCGAGCGAGTACGCCATGAAGACTTCCAAGA
AGCAGAAGGAGGCGCCGCCGACCCCCGAGCTGCCGGACTTCACTGGCGAGTTTCGCTCGGTTCACTGCTTCTGCCACTGT
GACAGCCTGGTGCTCGCCGCCACGGACACCAAGGTGTACCTATTCAACCCCACAATCAAGGACGTCGTCACGCTGCCGGA
CAGCAGCCGCAACAAGGTGCCCGGCTACACCGAAAGGCCCATTGGGTTCGGCCGTGATCCTCGCACTGGCATGTACAAGG
TTGTCCGGTCCTTATTCGGTTCGACAGACTGTAAAACTGGGATCGTCAGCATGGGGATGGAGGTGTGTACCGTGGGCAGC
CCTGCTCCTCCTCAATGGAGGGAAATCGCGGGGGATCAGCCATATGCCCCTGTGTCATCGGTGCCCGCGCAATCTGTCAA
GGGGTGTGTGTACTGGATAGTCG---------ACGATACCAACTTCGAGCCGCGCTCGCGTGGCCTCCTACGCTTCGACT
TGGTCGACGAGGCATTCAACTTCATCAGTTTGCCTTCTGATCTGTCGGACCTCGGAGATGACGACAATGAC---------
---AATGAACACTTCAACTTGAGTGTGTTGCACGGGGAGTTGTCTCTAACCGGCTATCGCGTCAATGAGCCTAACGACGT
GCATCGGCTGGTGGTGGTCTGGGCGCTCATGGAAGA---CGGGGCAAGCTCCGTGTGGGAACCGCGTCATACGTTGTATG
TCATGGAACCGTGCCACCCAATCGCTTTTCTTCCGGGCACGTTGATGCTACGGTTCAATCGCAAGCTCTGCCTCTACGAT
CTGCAGTCACGTGAGCTGGCAAATGCTTGTGAGCTGATCAAGATGAGATACCGGCGTCATGGGTCAGCCGAACTTGAGCC
TGCTTGGAAGCATGTGTACTTCTGCAACGTCATACCCTACATGGAAAGTCTTGTTCCAGTCGGTGCTCACATGGCCTGAC
TCTGATAGCTTTTCTAGCT----------------------------------------TTTTTTTAGAAACACCTGTAA
TTGTATTCATACTCATAACAATTGCATGTAAAATGATTTGGATCTAAGATAAA---AATAATAATAATACAAAGTAATCC
ATACAACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------TACAATGAAATCTCTTGAAAAT
ATCTTCTTCGTAGAATCAATCTCTGCTAGAA--GGAATACTCCCAAGACTCTGATAAAGTGCCTGCAGTTGGACTAGAGC
AATGATGTTGTCACTCTTTACCCGCA--GAA----CATTATCAGTAAAGGTTTTTGGAAGCGCCTTGAGTCGCCCATCCA
AAAAGAGGGGAAGCCTTGATCGTTGAATGCAGTTGGGTCATGGATGATCGCCTAGAAATGCAGG-CGTCGGATCACAAAA
TCTTTATCATGAAGTTGATGAAAGATTTCACCTCCACAGTGAATCAAACCAACAAAAAAA-ATTCAA-ACACTGACATAA
ACTCATCAAATCTGAAAAATCAGATCTTCGAGGAAGTAAAACTCTCTAAATTCATAGTGCCAC--AAAAAAA------TA
GTAATTCTATTCTCACAAACCT---ACTATCACTAGACGTTGACAAAAAACATAGAGCTCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGTCGTGAAAGCTTATGCATGTGCTAAGAGCATCTACAGTCAGTCGTCTCAAACCTGTTTCAAACGCACGAG
CGAGCGGACCGATCACTAAACGGTAAAAAAAAACGATCCATCTGGACGCCTCAAACCGTCCTCAAACGTCCCGCCTGTCC
GGTACCCC
>chr3B_1075
GGACTTTCTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------GGCGAGTTTCGCTCGGTTAGCTGCTTCTGCCACTGC
GATGGCTTGGTGCTCGTCCCCACGGCCACCATGGTATACCTCCTCAACCCCGCCATCAGAGACGTCATCACGTTGCCGGA
GAGCGGGTGCAACAAGGTGTCTGGCCTCTTCCACCGCCCCATTGGGTTTGGCCGTGATCCTCGCACTGGCATGTACAAGA
TAGTTCGGTACTTCTGCCGTCCTAGAGACTGTAAAACCGGCATATTCGGCATGGGGATGGAGGTGTGCACCGTGGGTGGC
CCCCCTCCTCTTCGATGGAGAGAAATCGCGGCGGATCTGTTGTACGACCCCTTGTCATTGGTGACCACGCAATCTGTCAA
GGGAGGTGTGTATTGGATCATCG---------ACGATGCCCGCCGAGAGTCGTGCCCACGTAGCCTCCTCTGCTTCGGCT
TGGACAACGAGGTGTTCAGTGCCATATGTTTGCCTTCTGATTTGTCGGACACCGAAGACGACGACAATAGCGATGATGAC
GTTGATGAACACTTCAACTTGAGTGTGCTGCACGGGGAGTTGTGCCTAACCGGCTATCATGTCAAGGAGCCTAACGACGT
GCATCGGCTGGCGGTAGTCTGGGCACTCGTGGAAGAAGACGGGGCAAGGTCTATGTGGGAACCGCGTTACACA---TATG
TCATGGGCCTGTTGCACCCAGTAGTTTTTCTTCCGGGCATGTTGATTCTATGGTTCCACTGCACACTCTACCGCTATGGT
CTGCAGTCACATGTGTTGTCAGTCATGTGTGACTTGGGCAAGCTGAGATACCGGCATCGCGGGTCAGACAAACTTGAGTC
TGCCTGGAAGAATGTGAACTACTTCAATGTGATACCCTACACAGAGAGTCTCGTTCCAGTCGCTGCT-------------
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--------
>chr3B_1091
TTC-----------------------------------------------------------------------------
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-----------------------------------------------------CGCTTGGCTCGCTTCTTCTCCCACTGT
GACGGCCTGGTGCTTGTCCCCACGGGCACCAAGGTGTTCCTCTTCAACCCGGCCACTAGGGACGTCCTCACACTTCCGGA
GAGCAGTCGCAACAAGGTGCCCAGCTTCATCCACCACCCCATTGGGTTCGGCCGTGATCCTCGCACTGGCATGTACAAGG
TAGTCCGGTCCTTATTCGGTTCGACAGATTGTAAAACTGGGATCGTCAGCATGGGCATGGAGGTCTGTACCGTGGGCGGC
CCTGCTCCTCCCCAGTGGAGGGAAATCGCGGGGGATCAGCCGTACGCCCCCGTGTCATCAGTGCCCGCGCAATCTGTCAA
GGGGGGTGTGTACTGGATAGTCG---------ATGATACCAACTTCGAGCCGCGCCCACGTGGCCTCCTACGCTTTGACT
TGGTCGACGAGGCATTCAACTTCATCAGTTTGCCTTCTGATCTGTCGGACCTCGGAGATGACGACAATGACGATGATGGT
GACAATGAACACTTCAACTTGAGTGTGTTGCACGGGGAGTTGTCTCTAACAGGCTATCGCGTCAAGGAGCCTAACGACGT
GCATCGGCTGGTGGTGGTCTGGGTGCTCATGGAAGA---CGGGGCAAGCTCTGTGTGGGAACCACGTTACACGTTGTATG
TCATGGACCCCTGCCACCCAATCGCTTTTCTTCCGGGCACTTTGATGCTACGGTTCAATCGCAAGCTCTGCCTCTATGAT
CTGCAGTCACGTGAGCTGACAAATGCTTGTGAGTTTATCAGGATGAGATACCGGCGTCATGGGTCAGCCGAACTTGTGCC
TGCTTGGAAGCATGTGTACTTCTGCAACGTCATACCCTACATGGAAAGTCTTGTTCCAGTCGGTGCTCACATGGCCTGAA
CTC---------TGAGAAAGTGAGCTTTTTTTTGCAAAAGAGAGACTGCTTTTTTTAGCTTTTTCTAGAAACACCTGTAA
TTGTATTCATACTCATAACAACTGCATGTACAATGATTTGAATCTAAGATAAA---AATAATAATGATACAAAGTAATCC
ATATGACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------TACAATGAAATCTCTAGGAAAT
ATCTTCTTCGTGGAATCAGGCTCTGCTAGAA--GGAATACTCCCAAGACTCTGATAAAGTTCCTCCAGTTGGACTAGAGC
AACGATATTGTCACTCTTTACCCGTA--GAA----CATTATCAGTAAAGGTTTTTGGAAGCGCCTTGAGTCGCACATCCA
AAAAGAGGGGAAGCCTTGATTGATGAACGCAGTTGGGTCAGGGATGATCGCCTAGAAATGCAGGTCGTCGGATCACAATA
TCTTTATCATGATGTCGATGAAAGATTTCACCTC-ACAATAAATCAAACCAACAAAAAAAGATTCAA-ACACTGACATAA
ACTCATCAGATCCGAACAACCGGATCTTCGAGGAAGTAAAACTCTCTAATTTCATGGTGCCAC----AAAAA------TA
GTAATCTTATTCTCACAAAGCT---ATTATCACTAGACGTTGACAAAGAACATAGAGCTCTCGAAGATCTAGCCCCCCCT
CCCCCCTAGCGCCCAGGTGATAGCCGAAGGGGAGGGGACAAAAATTTATCTGGCGACGGCAC------------------
----------------AATGACAGAGATGTCACTTGGTCGGGACAAGCCCATCTAGCATCTCTGATGGTTAATTAAGCGA
CATGTTTCAGGGTCTAACTTAG----------------------------------------------------------
--------------------------------------------------------------------------------
---------GTCGCCAAAGCTTATGCATGTGCTAAGAGCATCTACAGTCAGGGGTCTCAAACCCGTTTCAAACGCACGAG
CAAGCGGACCGATCATTGAATGGT-AAAAAACACGATCCATATGGATGCCTCAAAC------------------------
--------
>chr3A_1094
--------------------------------------------------------------------------------
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-----------------------------------------------------CGCTTGGTTCGCTTCTTCTCCCACTGT
GACGGCCTGGTGCTTGTCCCCACGGGCACCAAGGTGTACCTCTTCAACCCGGCCACTAGGGACGCCCTCACGCTTCCGGA
GAGTAGTCACAACAAGGTGCCCAGCTTCATCCACCACCCCGTTGGGTTCGGCCGTCATCCTCGCACTGGCATGTACAAGG
TAGTCCGGTCCTTATTCGGTTCGACAGACTGTAAAACTGGGATCGTCAGCATAGGGATGGAGGTGTGTACCGTGGGCGGC
CCTGCTCCTCCTCAATGGAGGGAAATCGCAGGGGATCAGCCGTACGCCCCTGTGTCATCGGTGCCCGCTCAATCTGTCAA
GGGGGGTGTATACTGGATAGTCG---------ACGATATCAACTTCGAGCCGCGCCCGCGTGGCCTCCTACGCTTCGACT
TGGCCGACGAGGCATTCAACCTCATCAGTTTGCCTTCTGATCTGTCGGACCTCGGAGATGACGACAGTGACAATGATGGT
GACAATGAACACTTCAACTTGAGTGTGTTGCATGGGGAGTTGTCTCTAACCGGCTATCGCGTCAATGAGCCTAACGACGT
GCATCGGCTGGTGGTGGTCTGGGCGCTCATGGAAGA---CGGGGCAAGCTTCGTGTGGGACCCGCGTTACACGTTGTATG
TCATGGAACCGTGCCACCCAATCGCTTTTCTTCCGGGCACGTTGATGCTACGGTTCAATCGCAAGCTCTGCCTCTACGAT
CTGCAGTCACGTGAGCTGGCAAATGCTTGTGAGTTGAGCAAGATGAGATGCCGGCGTCATGGGTCAACCGAACTTGAGCT
TGCTTGGAAGCATGTGTACTTCTGCAACGTCATACCCTACATGGAAAGTCTTGTTCCAGTCGGTGCTCACATGGCCTGAC
TCTGATAGCTTTTGAGATAGTGAGTTTTTTTTTGCAAAAGAGATATCGCTATTTTTAGCTTTTTTTAGAAACACCTGTAA
TTGTATTCATACTCATAACTATTGCATGTACAATGATTTGGATCTAAGATAATAATAATAATAATAATACAAAGTAATCC
ATACAACTAAGAATCTTTATCTAATAATAAAGCAAATTGGGTTTCTTTCGTCCGTCATGGCATTTTTCAGAAAAGTCCAT
ATATTTCAGAGAATTCAACTCGCAGTCTTGTTTTAAGTTAAAATGAATCATTATTTTCATGTTTTACACAAAAGTCCGTG
TCTTTTACTGAAATCAACCCGTCGTTCGGATCTAAGTCACACCCGAACCGTTATTTTACATTTTTCGAAACCCCCCCCGG
ATGTTTTAGGTAATTCATCCGCGGATCATATTTAAGTCAAACAAATGCTTTTTAAAATCATCCATATCTTTTAAACCGTA
ACTCCGATTTGAACATTTTATATATGAAATTTAATTAGAAAAATATGTAGAATATGAATATGAGATTATTTTTACCTGTT
AAGTATTTTTAAATATTATTTTGGAATATATTTGAGTCAAACCAAATGATTTTCTAAATGATTTGTATCTTTTAAACCGT
AACTTTGATTTTAACATATTATATATGAAAGTTTATTAGGAAAATGTGTGGAATCCAAATATGATGTTAATTTTACATGT
TAAATATTTTTAAAATATTTTTATGGAAGCAAACTTATAATTTATAGCACAAGATTCTTTTTTTCATACCGGCGGTGATC
CAGATTGCAAATAAACACCCCACTATGACCATATACTGAAAAGAAAACATCGATAACTACACATGCATACCTCTAAAAAA
TATCACAGGGGAAAACAACAAATTTCTCATCGCGAGAGTGAGAGAAAGCGAGCGAGAGAGAGAGAGAGAGGGAGAGAGAG
ACGCCTTAGGATTAACCATATTCAACACACTTTTTTGTTGTTTTGTGTGAACACCGAGGCCATCACCGGCGAGAGTGAGA
AGGAGGATAAGTGGCAACACAAATATGATGCCTCGAAAAAAAAAGATGGACCTATTGTGGTCTTGAGTGATGGTTGTTGA
GTTAAGAGCGTGTGTTATGTTTTCTCTCCCGTTGCAATGCACGGGCTCTTTTGCTAGTTAAAATGAAATCTCCTGGAAAT
ATCTTCTTCGTGGAATCAATCTCTGCTAGAA--GGAATACTCCCAAGACTCTGATAAAGTGCCTGCAGTTGGACTAGAGC
AACGATGTTGTCACTCTTTACCCGCA--GAG----CATTATCAGTAAAGGTTTTTGGAAGCGCCTTGAGTCGCCCATCCA
AAAAGAGGGGAAGCCTTGATCGATGAATGCAGTTGGGTCAAGGATGATCGCCTAGAAATGCAGGTCGTCGGATCAAAAAA
TCTTTATCATGATGCCGATGAAAGATTTCACCTCCACAATGAATCAAACCAACAAAAAAA--TTCAA-ACACTAACATAA
ACTCATCAAATCCTAAAAACCAGATCTTCGAGGAAGTAAAACTCTCTAAATTCATGGTGCCACAAAAAACAA------TA
GTAATTTTATACTCACAAAGCT---ACTATCACTAGACATTGACAAAGAACACAGAGCTCTCGAAGATCAT------CCC
CCCTCCCAGCGCCTAGGTGAAAGCTGAA-GGGAGGGGACATAAATTTATCTGGCGACGGCTGCTGAATGAGCCCTCCTTT
TTAGCTAGTAAAAGAAAACGACAGAGATGTCGCTTGGTCGGTACAAGCCCATCTAGCATCTCCGATGATTAATTAAGCGA
CATGTTTCAT-GTCTAACTTAT----------------------------------------------------------
--------------------------------------------------------------------------------
---------GTCGTGAAAGCTTATGCATGTGCTAAGAGCATCTACAGTCAAGCGTCTCAAATCTGTTTCAAACGCACAAG
CGAGCGGACCGATCACTGAACGGT-AAAAAAAATGATCCATCTGGACGCCTCAAACCGTCCTCAAACGTCCTGGCTGTCC
GGTACCC-
>chr3A_1096
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-------------------------------------------------------CTTGGTTCTCTTGTTCCCCCATTGT
GACGGCTTGGTGCTTGTCCCCACAGACACCACGGCGTACCTCTTCAACCCCGCCACCAGGGACGTCGTCACGCTGCCGGA
GAGCAGCCACGGCATTGTGCCCCCTTC---CCTCCGCCCCATTGGGTTTGGCCGTGATCTTCGCAGTGGCATGTACAAGG
TAGTCCAGTTCTTCCTTCGTTTGAGAGATGATGAG---------CTCTACAACAGGGTGGAGGTGTGCACCGTGGGCGAC
CCTGCTCCTCCTCAATGGAGGGAAATCATGGCGGATCGACGGTACACAGCCGATCCATGGGTGACCGCGCAATCTGTCAA
TGGGGGTGTGTACTGGATCGTCCACGTCGACAACTATACCAGCCTGGAGCCGCACCCGCGTTGCCTCCTCCGCTTCGGCT
TGGACGATGAGGCGTTGAGCCACATCCATTTGCCTTCTGATCCGTCGGACCCCGAAGACGATGACAACA---------AC
GTTGATAAACGCTTCAAGTTGAGTGTGTTGCAGGGAGAGTTGTGTCTAACCGCTTATCGCGATAGAGAGCCTAGATACGG
GCATCGACTGGTGGT-----------------------------------------------------------------
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--------
>chr3B_1099
--------------------------------------------------------------------------------
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----------------------------------------------------------GGTTCTCTTCTTCCCCCATTGT
GACGGCTTGGTGCTTGTCCCCACAGACACCACGGCGTACCTTTTCAACCCCGCCACCAGGGACATCGTCACGCTGCCGGA
GAGCAGCCACGGCATTGTGCCCCCTTC---CCTCCGCCCCATTGGGTTTGGCCATGATCTTCGCAGTGGCATGTACAAGG
TAGTCCAGTTCTTCCTTCGTTCGAGAGACGATGAG---------TTCTACAACGGGGTGGAGGTGTGCACGGTGGGCGAC
CCTGCTCCTCCTCAATGGAGGGAAATCATGGCGGATCGGTGGTACACAGCCGATCCATGGGTAACCGCGCAATCGGTCAA
TGGGGGTGTGTACTGGATCGTCCATGTTGACAACTATACCGGCCTGGAGCCGCATCCACGTTGCCTCCTCCGCTTCGGCT
TGGACGATGAGGCATTGAGCCACATCCATTTGCCTTCTGAACTGTCCGACCCCGAAGACGATGACAACA---------AT
GTTGATAAAAGCTTCAAGTTGAGTGTGTTGCAGGGAGAGTTGTGTCTAACCGCTTATCGCGCCAGA------------GG
GCATCGACTGATGGTGGTCTGGGCGCTCGTGGAAGA---CGAGGCAAGCTTCGTCTGGGAACCGCGTCACACGTTGAATG
GCATGGACCCGTGCCACCCAATCGCTTTTCTTCCGGGCACATTGTTGCTATGGTTCTATGGCAAGCTCTGCATCTACGAC
CTGCGGTCACGTGAGCTGACAAATGTTTGTGACTTCAGCTGGCTAAGATATCGGAGTCATGGCTCAGGTGAACTTGAGCC
TGCTTGGAACAGTTTGCCCTTCTTCGACGTGATACCCTATACAGAAAGTCTTGTTCCAGTCGGTGCTCACCCGGCTTGAC
--------------------------------------------------------------------------------
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--------
>chr7D_1987
TTTC----------------------------------------------------------------------------
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---------------AGGT----------------------------------------TTTTTTTAGAAACACCTGTAA
CTTTATTCATATTTATAACAATTATAGGTACAATAATTTTGACCTAAGATCCA---AG-AA----AATACCAAATAACTC
TTATGACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------TACAATGAAATTTCTTAAAAAC
ACCTTCTTCACGGTATCAATCTTTGCTCGAA--GAAATACTCCAAAGACTTCGGCAAAGAGGCTGCAATTGGACTGAAGC
AATGATGTTGTTACTCTTTCACCCGCACGATC----ATTACCAATAATAATTTTTGAAAGCGCCTTGAGTCGCCCATCCA
AAAAGATAGGACGCCTTGATTGATGAACGTACTTGGGCCGGGGAAGATCCCATAGAAGTGCAGGTCGTCGGATCTATATA
TCTTCATCATGGTGTCAATGAAAGATTTCACCTCCACAAAGAATCAGACCAATAAAAAAAGGCTTGACACAGCAACATAA
ACTCATCAGACCCGAATAATCGGATCTTCGAGGACAGAAAACTCTCTAATCTCATGGCACCGC----CAAAAGAACGAGA
GGAAATTTTTTCTCACAAAACTTTGATAATCACTAGACGTTGACGAAGAATATAGAGGTCT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------
>chr4B_1990
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------TAGCTTTCTTTAGAAACACCTGTAA
CTTTATTCATTCTCATAACAATTACAGGTACACTGACTTGGACCTGATATCCA---AG-AA----AATACAAAGTAACTC
ATATGACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TACAATGAAATCTCTTGAAAAC
ACCTTCTTCATGGCGTCAATCTCTGCTCGAA--GAAATACTCCTAAGACTTCAATAAAGAGACTACAATTGGACTGGAGT
AACAATGTTGTCACTCCTTCATCTGTATGAA----AATTACCAATAATGGTTTTTGAAAGCGCCTTGAGTCGCCCATTCA
AAAAGATGGGAAGTCCTGATTGATGAACGTACTTAGGTCAGGGATGATCCCTTAAAAGTGCAGGCCGTCGAATCACTGTA
TATTCACCATGGTGCCGATGAAAGATTTCACCTTCACAAAAAAACAAACCAACAAAAAAG-ACTTGACACAACAACATAA
ACTCACCAGATTTGAATAATCGGATCCGCGAGGACAT-AAACTCTCTAATCTCATAGCACTGC----CAAAAGAACGAGA
GGAATTTTATTCTCACAAAACTATAATGATCACTGGACGATGGCGAAGGACATAGAGGTCT-------------------
--------------------------------------------------------------------------------
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--------
>chr6D_1995
--------------------------------------------------------------------------------
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------------------T----------------------------------------TTTTTTGA-GAACACATGTAA
TTTTATTCATACTCATAACAATTACAGGTACACTGATTTGGATCTAAAATCCA---AG-AA----AACACAAAGTAACTC
CAATAACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TACAATGAAATATGTTGGAAAC
ACCTTCTTCACGGTATGATTCTCTGCTAGAAAAAAAATATTCCAAAGATTTCGGTAAAGAGGCTGCAATTGAACTGGAGC
AACGATGTTGTCACTCTTTCACCCGCACGAACATTAATTACCAATAATGGTTTTTGAAAGCGCCTTGAGTCGCCCATCCA
AAAAGGTGGGAAGCCTTGATCGATAAACGTACTTGG-TCGGGGATGATTCCCTAGAAGTGCAGGCCATCGCATCACAATA
TCTTCACCATGATATTGATGAAAGATTTCAACTCCACAAAGAATCAAACCAACAAAAAAA-ATTTGACACACCAACATAA
ACTCAACAGATTCGAATAATCGGATCTCCAAGGACGGGAAACTCTCTAATCTCAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr7D_1996
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TTTTTTTAGAAACACCTGTAA
CTTTATTCATACTCATAACAATTACAGGTATACTGATTTGGACCTAAAATCGA---AG-AA----AATACAAAGTAACTC
CTATGACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGCAATGAAATCTCTTGAAATC
GCCTTCTTCGCGGTATCAATCTTTGCTCGAA--GAAATACTCCAGAGACTTTGGTAAAGAAGCTGCAATTGGACTGGGGC
AACGGTGTTGTCACTCTTTCACCCACACGAAC----ATTACCAATAATGATTTTTGAAAGCGCCTTGAGTCGCCCATCCA
AAAAGACGGGAAGCCTTGATCGATGAGCGTACTTGGGCCGGGGATGATCCCCTAGAAGTGCAGGCCACCGAATCACTATA
TCCTCACCGTGGTGTCGATACAAGATTTTGCCTCAACAAAGAATCAGACCAACAAAAAAA-GCTTGACACAGCAACATAA
ACTCATCGGATTCGAATAATCGGATCTGCGAGGACAGAAAACTCTCAAACCTCATGGCACCAC----CAAAAGGATGAGA
GGAAATTTATTCTCGCAAAACTATCATGATCACTGGAAGTTGACGAAGAACATAAAGATCT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>chr2D_1996
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTTTTAGAAACACCTGCAA
CTTTATTCATACTCATACAAATTACAGGTACACTGATTTAGACCTAACATCCA---AGAAA----AATACGAAGTAACTC
ATATGACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATAATGAAATCTTTTATAAAC
ACCTTCTTCGCGGTATCAATCCCCGCTTCG-AAGAAATACTTCAGAGACTTCGATAAAGAGGCTGCAATTAGACTGGAGC
AACGATATTGTCATTCTTTCACCCGCACGAAC----ATTACCAATAATGGTTTTTGAAAGCGCCTTGAGTCGCCCATCCA
AAAAGATGGGAAGCCTTAATCGATGAACGTACTTGGACCGAGGATGATCCCCTAGAAGTGCAGGCCGCCGAATCACAATA
TCTTCACCATGGTGTCGATGAAAGATTTCAACTCCACAAAGAACCAAACCAAGAAAAAAG--TTTGACACACCAACATAA
ACTCATTAGATCCGAATAATCGGATCTGTTAGGACAGAAAACTCTCTAACCTTATGGCTCTGC----CAAAAAATAAGAG
TAAATTTTATTCTCACAC------GATAATCACTAGACGATGAC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>chr2B_1996
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TTTTTTTA-AAACACCTGTAA
TTTTATTCATGGACATAACAAT----GGTACACTGAATTTGACCTAAGATCCA---AAAAA----ATTACAAAGTAACTC
CTATAACTAAGAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TACAATGAAATCTCTTGAAAAC
ACCTTCTTGGTGGCATCAATATATGCTCGAAAAAA--TACACCAAAGACTTTGATAAAGAGTCTGTAATTAGACTGGAGC
AACAATGTTGTCACTCTTTTATCCGCACAAAC----ATTAATAATAATGGCTTCTGAAAGCGCATTGAGTCGCCCATCGA
AAAAGATGGGAAGCCTTAATCGATGAACGTACTTGGGTCAGAGATGATCCTCTAGAAATGCAGGCTATCGAATCA---TA
TCTTCACCATGACGTCGATGAAAAATTTCACCTACACAAAGAATCAGACCAACAAAAAAA--CTTGACCCATCAACATAA
ACTCATCAGCTTTC--AAAACGGATCTACGAGGACAAAAAACTCTCTAATCTCATGGCACCAC----CCAAACAACAATA
GGAAATTTATTCTCACGAAACTATGATGATCACTAGACATCGACTAAGGACATAGA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>SNPs
----SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----------------
---S------------S-S----------------------S---------S-S----S---------------------
S-------------------------S--S-S-SS-S-------------------------------------------
-S---------------------------------------------------------------------------S--
-----------------------------------------S--S-----------------------------------
----S--------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
-------------SS--S--------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-----------------S---------------------------------------
------------S-------------------------S-----------------------------------------
--------------------------------------------------------------------------------
------S------------S---------------------------S-------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS------------------------------------------S----------------------------
-----------------S------S----------------------------------------------S-S------
-------S
>forward_251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AGCACTGGG
AGTAGGAGGAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>reverse_1402
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATATGCCCCTGTGTCATCGG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>forward_546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCACCCTTGGACGTACAAGC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>reverse_3383
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TTGAATGCAGTTGGGTCATGG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
