>input_sequence_61478
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--ATGGAGGGCAAGGAGGAGGACGTGCGTCTGGGCGCCAACCGGTACTCGGAGCGGCAGCCGATCGGAACGGCAGCGCAG
------GGCGCGGACGACAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGGCGGAGGAGCTGACGTCGTGGTC
CTTCTACCGCGCGGGGATCGCCGAGTTCCTGGCCACCTTCCTGTTCCTGTACATCAGCGTGCTCACGGTGATGGGCGTGG
TGGGCA------ACCCCTCCGGCTCCAAG---------------TGCGGCACCGTGGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGG
GCTGTTCCTGGCCAGGAAGCTGTCGCTCACCCGGGCCGTGTTCTACATGGTGATGCAGTGCCTGGGGGCCATCTGCGGCG
CCGGGGTGGTGAAGGGGTTCCAGACCACGCTGTACATGGGCAACGGCGGCGGCGCCAACTCGGTGGCGCCGGGGTACACC
AAGGGCGACGGCCTGGGGGCGGAGATCGTGGGGACCTTCGTGCTCGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTGCAC------------------CGGCCTCTCTAA-CTAGCGCGTGGAAC
ATATCATTTCGTGGATGATGAAC----------AAATTAACTG--------ATGTATGGATGGATTCG------------
----------------GTGCAGATCCTGGCGCCGCTGCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACCGGCACCGGCATCAACCCGGCGCGCTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGTCGTGGGACGAC
CACGTAAGA-----AGAATCACTTAACTAACAAAACTAGGACTATCAGTCACTACTTAGAGACTAATTATTCATGCTTGG
GAGGAATTA-------------------------------AGCTTGATGATCATGGTTTTGGGCA---------------
---------------------------------TGCAGTGGATCTTCTGGGTGGGCCCGTTCACCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGGCTAG--------------------------
--------------------------------------------------------------------------------
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------
>chr5A_1_TraesCS5A01G181000
AGTGTCGCTCGGCTTTCATCTAATCCAGGGGCCAACCACAGGACATCACACTTTCATAAAATAAGTCGAGTGTCTAGAGG
GGGCACACGAAATAAGTGTAGGCCAGGTGTCGACACGGCATCTTACATTTCGGACAGTGGTCATCCGAAAGATGACACGT
GTACGTCATATAAACCGAATATCACGTAGGATGTGCACATCATAGGTATAAGCCGAGCGTGGGCCCTCGGCTTATATATA
CACCGTGCTTCGCCATTAGGATTGGTGCTCGTCGTTCACTGCTGTAAGCGGAGCTGCGCATAAGTTACACTCGGCTTATG
ACGAAACATCAGCTATGGTTGCATGTATGTTTATTTTAAGTTTTCGGTTATTATTATTATCCCT----CCCCCGCCTG-G
GATAATGACCAATATATATAAGATTAAAACATAGAACCTGTGTTGCAACCTTTTGGAAGCACTACATGTCCGTGTCTGTC
TAGCAACTAGTACTAGCTGGAACAAAAAGGACACCACTTTCTGCTCTCATAATGCAAGATTCTGTACAAATGAATTCAGC
CCACTGATCAATATTATCTTATCACCGACTTAAACTAGTATACTAAGTATCTGCTATTAACAACAGCCGACGAAACCATT
CGATACCACAAACTCTGCCGCTCCATGACATGGAAGGTGAGGTGAGACGCCCAGAGTAGTAAACAAGCCACAACAATTTC
ATAGACCAACTAATAGAACTAATAAAGTGCCATCACTGGGCCACTAATCAGTAAACCAAACCCGCCCCCTATCATCATCC
ACTAATCAACAAGTGGCAGCAAAGGCAAAATAAGC---------ACATTATCAGTTTATCAC--CACACACACAATGCAG
AGCAACCATGATTGACC--CCCGCTATAAGAAGCGCTCCAAAGCCACTCCCTTTCCTCATCTC--------TCTCTCGCA
CACCCATCCATCATCATCTCATCTCCTCTGCCTAACAGGCTAAGCAGCTG-AGCTC------------AAGCA---GCGG
CAATGGAGGGCAAGGAGGAGGACGTGCGTCTGGGCGCCAACCGGTACTCGGAGCGGCAGCCGATCGGAACGGCAGCGCAG
------GGCGCGGACGACAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGGCGGAGGAGCTGACGTCGTGGTC
CTTCTACCGCGCGGGGATCGCCGAGTTCCTGGCCACCTTCCTGTTCCTGTACATCAGCGTGCTCACGGTGATGGGCGTGG
TGGGCA------ACCCCTCCGGCTCCAAG---------------TGCGGCACCGTGGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGG
GCTGTTCCTGGCCAGGAAGCTGTCGCTCACCCGGGCCGTGTTCTACATGGTGATGCAGTGCCTGGGGGCCATCTGCGGCG
CCGGGGTGGTGAAGGGGTTCCAGACCACGCTGTACATGGGCAACGGCGGCGGCGCCAACTCGGTGGCGCCGGGGTACACC
AAGGGCGACGGCCTGGGGGCGGAGATCGTGGGGACCTTCGTGCTCGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTGCAC------------------CGGCCTCTCTAA-CTAGCGCGTGGAAC
ATATCATTTCGTGGATGATGAAC----------AAATTAACTG--------ATGTATGGATGGATTCG------------
----------------GTGCAGATCCTGGCGCCGCTGCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACCGGCACCGGCATCAACCCGGCGCGCTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGTCGTGGGACGAC
CACGTAAGA-----AGAATCACTTAACTAACAAAACTAGGACTATCAGTCACTACTTAGAGACTAATTATTCATGCTTGG
GAGGAATTA-------------------------------AGCTTGATGATCATGGTTTTGGGCA---------------
---------------------------------TGCAGTGGATCTTCTGGGTGGGCCCGTTCACCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGGCTAGCATACTCAATCGGCCATGGA------
ACGGA-----TGGAATCCTATCG---TTCATCGACCATCGTT--TGTGCTGATCGTTGCTCCTGCGTGAGTACTCCTGTA
ACTATCGGTCTGCCGTACTGTTCCTGAGCGAG--CGAGCGTGTGTGTCCTTCAGTCGGTGTGTCAGCGTTACAAGTGTG-
---GTGCACTTCTTCACCGCGCCTACCCAAAATGTGCAAATT-TCGGTACTTGTGGTTCCCTCTCTTTTGTAAGCAA---
--------------------------AATGCGTGTATAAAATAACAAGGAATGAAGATCGAATTAACGATCGATCTTCAA
CTGGAGTGCTATTACATCGATACTTGTTCCGTTCCAAAACATTTGGGATTTCTGGGTTTGTACTAAGTCAAACTTGTTTA
AGTTTGACTAACTTTAC--AAAAAATGCTAATATCTACACCATTAAATATATGTTA------------------TAATGA
CACTGATTAAGCTAATTTGATGTTGTAGATATTGGAAAGTTTTCTATTAACTTGGTCAGATGTAAAGAAGTTTGACTTAA
GACAAACCTAAAACTTCAAGCCTTTTGAAATAAATTAAGTGCATATGTGTGTCATATGAAAATAAAATGTTCTCTATATG
TGTGTCATGCTCTGCTTGTCTCTAAGCACTCACGCGAGATGGAGCTGGGCTGACTGGTGGGCTTAACAGGCCAAAATACC
AATACTGACGGGCCGAAAATACGGACTGATATCCTATTTGGCGCATAAGCCACCAAATAGTAGCCATTTCGTAGAAAACA
CGCACCCCCTCGAGCACTACCACGATAAGTAGGCCAACCCATGCAGCTACCTTCACCGGCTTTGGAGTCACCACTTTTTT
CTCAGTTTTTATTTTTTATATATGAATATTTTTCAAATTCGCATTTGTTTGTCAAATTTCACAAACTTTTTTTAATTCAT
GAACTTATAAAATTTCATGTATTGTTTTTAAAGTTCTTCAACTTGTAAAAAATACGACCATTTTCAAAATTCGTAGACTT
TTTCTA
>chr5D_1
AGTGTCGCTCAGTTTTCATCTAATTCAGGGGTCAACGAGAGGACACCACATTTTCATAAAATAAGTTGAGTGTCTAGAGG
GAGCACACGACATAGGTGTAGGGCAAGTGTCTACGCAACGTCTTACAATCCAGCCAGTGGTCATCCAGGAGATGACACGT
GTACGTCGTATAAGCCGAGCATCATGTAGCCCGTGCACATCATAGGTGTAAGCCGGGCGTTGACCCACAG-TTATATATA
CACAGTGCTTCGTCAATAGGATTGGTGCTCGTCTTTCACTGCTGTAAGCGGAGCTGCCCATGAGCTACACTCGGCTTAGG
ACGAAACATCGACTATGGTTGCATGTATGTTTATTTTAAGTTTTCGGTTATTATTATTATCCCTCTAGCCCCCGCCCT-G
GATAATGACCAATATATATAAGATTAAAACATAGAACCTGTGTTGCAACCTTTTGGAAGCACTACCTGTCCGTGTCTGTC
TAGCAACTAGTACTAGCTAGAACAAAAAGGACACCACTTTCTGCTCTCATAATGCAAAATTCTGTACAAATGAATTCAGC
CCACTGAACAATATTGTCGTATCACCGACTTAAACTAGTATACTAAGTATCTGCTATTAACAACAGCCGACGAAACCATT
CGATACCACAAACTCTGCCGCTCCATGACATGGAAGGTGAGGTGAGACACCAAGAGTAGTAAACAAGCCACAACAATTTC
AT-GACCAACTAATAGAACTAATAAAGTACCATCACTGGGCCACTAATCAGTAAACCAAGCCCGCCCCCTATCATCATCC
ACTAATGAACTAGTGGCAGCAAAGGCAAAATAAGC---------ACATTATCACCACACACACACACACACACAATGCAG
AGCAGCCATGATTGACC--CCCGCTATAAGAAGCACTCCAAAGCCACTCCCTTTCCTCATCTC--------TCTCTCGCA
CACCCATCCATCATCATCT-----CCTCTGCCTAACAAGCTAAGCAGCTG-AGCTC------------AAGCA---GCGG
CAATGGAGGGCAAGGAGGAGGACGTGCGTCTGGGCGCGAACCGGTACTCGGAGCGGCAGCCGATCGGGACGGCGGCGCAG
GGCGGCGGTGCGGACGACAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGGCGGAGGAGCTGACGTCGTGGTC
CTTCTACCGCGCGGGGATCGCCGAGTTCCTGGCCACCTTCCTGTTCCTGTACATCAGCGTGCTCACGGTGATGGGCGTGG
TGGGCA------ACCCCTCCGGCTCCAAG---------------TGCGGCACCGTGGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGG
GCTCTTCTTGGCCAGGAAGCTGTCGCTCACCCGGGCCGTGTTCTACATGGTGATGCAGTGCCTGGGGGCCATCTGCGGCG
CCGGGGTGGTGAAGGGGTTCCAGACCACGCTGTACATGGGCAACGGCGGCGGCGCCAACTCGGTGGCGCCGGGGTACACC
AAGGGCGACGGCCTGGGGGCGGAGATCGTGGGGACCTTTGTGCTCGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTGCAC------------------CGGCCTCTCTTAGCTAGCCCGTGGAAC
ATATCATTTCGTGGATGATGACC----------AAATTAACTG--------ATGTATGGATGGATTTG------------
----------------ATGCAGATCTTGGCGCCGCTGCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACCGGCACCGGCATCAACCCGGCGCGCTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGTCGTGGGACGAC
CACGTAAGA-----AGGATCACTTAACTAACAAAACTAGGACTATCAGTCACTACTTAGAGGCTAATTATTCATGCTTCG
GAAGAATTA-------------------------------AGCTTGATGATCATGG-TTTGAACA---------------
---------------------------------TGCAGTGGATCTTCTGGGTGGGCCCGTTCACTGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGACTAGTATACTCAATCAGCCATGGG------
ATGGAAATT-TGGAATCCTATCG---TTCATCGACCATCATT--TGTGCTGATCGTTGCTCCTGCGTGCGTACTCCTGTA
ATTATCGGTCTGCCGTACTGTTCCTGAGCGAG--CGT--GTGTGTGTCCTTCAGTCAGTGTGTCAGCGTTACTAGTGTGG
TCAGTGCACTTCTTCACCGCACCTACCCAAAATGTGCAAACTATCGGTACTTGTGGTTCCCTCTCTTTTGTAAGCAATGC
GTGTATAAAATATTCCCGCGAAAAAAAATGCGTGTATAAAATAACAAGGAATGAAGATCGAACTAACGATCGATCTTCAA
GTGGAGTGCTATTACATCGATACTTGTTCCGTTCCAAAATATTTGGGATTTCTGGGTTTGTACAAAGTAAAACTTCTTTA
AGTTTCACTAACTTTTATAAAAAAATGCTAATATCTACACCATTAGATATA-----------------------------
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------
>chr5B_280
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------TGCTCTAAGCGGAGCTGCCCATAAGCTACATTCGGCTTATG
ACGAAACATCGACTATGGTTGCATGTATGTTTATTTTAAGTTTTTGGTTATTATTATTATCCTTCTAGTCCCCGCCCCCG
GATAATGACCAATATATATAAGATTAAAACATAGAACCTGTGTTGCAACCTTTTGGAAGCACTACCTGTCCGTGTCTGTC
TAGCAACTAGTACTAGCTAGAACAAAAAGGACACCACTTTCTGCTCTCATAATGCAAAATCCTATACAAATGAATTCAGC
CCACTGATCAATAGTATCTTATCACCGACTTAAACTAGTATACTAAGTATCTGCAATTAACAACAGCCGACGAAACCATT
CGATACCACAGACACTGCCGCTCCATGACATGGAAGGTGAGATGAGACACCAAGAGTAGTAAACAAGCCACAACAATTTC
ATAGACCAACTAATAGAACTAATAAAGTACCATCACTGGGCCACTAATCAGTAAACCAAACCCGCCCCCTATCATCATCC
ACTAATGAACAAGTGGCAGCAAAGGCAAAATAAGC---------ACATTGTC--------AC--CACACACACAATGCAG
AGCGACCATGATTGACC--CCCGCTATAAGAAGCACTCGAAAGCCACTCCCTTTCCTCATCTC--------TCTCTCGCA
CACCCATCCATCATCATCT-----CCTCTGCCTAACAAGCTAAGCAGCTG-AACTC------------AAGCA---GCGG
CAATGGAGGGCAAGGAGGAGGACGTGCGGCTGGGCGCCAACCGGTACTCGGAGCGGCAGCCGATCGGGACGGCGGCGCAG
GGCGGCGGCGCGGACGACAAGGACTACAAGGAGCCGCCGCCGGCGCCGCTGTTCGAGGCGGAGGAGCTGACGTCGTGGTC
CTTCTACCGCGCGGGGATCGCCGAGTTCCTGGCCACCTTCCTGTTCCTGTACATCAGCGTGCTCACGGTGATGGGCGTGG
TGGGCA------ACCCCTCCGGCTCCAAG---------------TGCGGCACCGTGGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCCGTCACCTTCGG
GCTGTTCTTGGCCAGGAAGCTGTCGCTCACCCGGGCCGTGTTCTACATGGTGATGCAGTGCCTGGGGGCCATCTGCGGCG
CCGGGGTGGTGAAGGGGTTCCAGACCACGCTGTACATGGGCAACGGCGGCGGCGCCAACTCGGTGGCGCCGGGGTACACC
AAGGGGGACGGCCTGGGGGCGGAGATCGTGGGGACCTTTGTGCTCGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTACAC------------------CGTCCTCTCTAA-CTAGCGCGTGGAAT
ATATCATTTCGTGGATGATGACC----------AAATTAACTGATGTGTGTATGGATGGACGGATTTG------------
----------------GTGCAGATCTTGGCGCCGCTGCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACCGGCACCGGCATCAACCCGGCGCGCTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGTCGTGGGACGAC
CACGTAAGA-----AGAATCAATTAATTAGCAAATCTAGGACTAG----------TTAGAGACTAATTATTCATGCTTCC
GAGGAATTA-------------------------------AGCTTGATGATCATGGTTTTGGACA---------------
---------------------------------TGCAGTGGATCTTCTGGGTGGGCCCGTTCACCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGACTAGTAAACTCAATCAGCCATGGA------
ATGGAATGGATGGAATCCTGTCG---TTCATCGACCATCGTT--TGTGCTGATCGTTG--------------CTCCTGTA
ATTACCGGTCTGCCGTACTGTTCCTGAGCGAGCGCGT--GTGTGTGTCCTTCAGTGAGTGTGTCAGCGTTACTAGTGTGG
TCAGTGCACTTCTTCACCGCACCCACCCAAAATGTGTAAATT-TCGGTACTTGTGGTTCCCTCTCTTTTGTAAGCAA---
--------------------------AACGTGTGTATAAAATAACAAGGAATGAAGATCGAATTAATGATCGATCTTCAA
GTGGAGTGCTGTTACATCGATACTTGTCCCGTTCCAAAATATTTGGGATTTCTGGGTTTGTACTAAGTCAAACTTC-TTT
AGTTTGACTAACTTTAT--AAAAAAATGC----TCTACACCATTAAATATACAGTACATGATGAAAATATAGGTTAATGA
CACTAAATAAGCTAATTTGATGTTGTAGATGTCGGCACATTTTCTAAAACCTTGCTCAGATGTAAAGAAGTTTGATTTAA
GACAAACCTAAAACTTCAAGTCTTTTGAAATGAAATAAGTA-----------CATATGAAAATAAAATGTTCTCTATATG
TGTGTCATGTTGTGCTT---------------------------------------------------------------
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>chr6D_788
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------------------------------------------------------------------------CATCACCC
ACTAATCAAGAAGTGGCAGCAAAAAAATAAACCAAGAAAACAAAACATTATCATCACACACAC-----CATGCATAGTAG
AGCAGCCATGATTGGTTGGCCCTCTATAAGAAGCTCTCCAAAGACACTTCCTCTCCTCA------------TCTCTCTCT
CACACACACATCATCTCCT-----CCACCTCTC--------AACCAAGCCAAGGCCAAGAGCTCAGTGAAGCA---GCGG
CCATGGAGGGCAAGGAGGAGGACGTGCGGCTGGGCGCGAACCGCTACTCGGAGCACCAGCCCATCGGCACGGCGGCGCAG
GGCGGCGGCGCGGACGAGAAGGACTACAAGGAGCCGCCCCCGGCCCCCTTCTTCGAGGCCGGGGAGCTCACCTCCTGGTC
CTTCTACCGGGCCGGCATCGCCGAGTTCCTGGCCACCTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGG
TGGGCA------ACCCGTCCGGGTCCAAG---------------TGCGGCACCGTCGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCGGTCACCTTCGG
GCTGTTTTTGGCCCGGAAGCTGTCGCTTACCAGGGCCGTGTTCTACATCGTGATGCAGTGCCTGGGCGCCATATGCGGCG
CCGGCGTGGTGAAGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCGCCCGGGTACACC
AAGGGGGACGGGCTCGGCGCCGAGATCGTCGGCACGTTCGTGCTGGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTGCTCCTGTAGAATAA---TAGTTACAGACTTACAGTGCACCGGCCTGCC
GGCGGCGGCCACCGTACCGTAGGTGTTTGGTTTGGACAGACTCATGAG--------GTGA------------AACTGATT
AAAACTGGTGGGAAACATGCAGATCCTGGCGCCGCTTCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACGGGGACCGGCATCAACCCGGCGAGGTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGAC
CACGTAAGT-----AGAATCAACACCCTCCACCATCATTAGTAGCTCGATCGTG--------------------------
------TTA-------------------------------AGCTTGATGATGATTATGGTTACGAGCCGCGACCAGCTT-
ACTAATCTCATCGACACAATCTGAT---AATTTGGCAGTGGATCTTCTGGGTGGGCCCGTTCATCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCCGGGCCATCCCCTTCAAGAGCCGCGACTAGTCCACCAATCAACCAGTC----G---
-CGAA-----TGGAATCTTATCG---------------------------------------------------------
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------
>chr6A_788
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------------------------------------------------------------------------CATCACCC
ACTAATCAAGAAGTGGCAGCAA-AAAATAAACCAAGAAAACAAAACATTATCATCACACACACAC---CATGCATAGTAG
AGCAGCCATGATTGGTTGGCCCTCTATAAGAAGCTCTCCAAAGACACTCCCTCTCCTCATCTCA-----TCTCTCTCTCT
CACACACACATCATCTCCC-----CCACCTCTCT----C---------CCAAAGCCAAGAGCTCAGAGAAGCA---CCGG
CCATGGAGGGCAAGGAGGAGGACGTGCGCCTGGGCGCGAACCGCTACTCGGAGCACCAGCCCATCGGCACGGCGGCGCAG
GGCGGCGGCGCGGACGAGAAGGACTACAAGGAGCCGCCCCCGGCCCCCTTCTTCGAGGCCGGGGAGCTCACCTCCTGGTC
CTTCTACCGGGCCGGCATCGCCGAGTTCCTGGCCACTTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGG
TGGGCA------ACCCGTCGGGGTCCAAG---------------TGCGGCACGGTCGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCGGTCACCTTCGG
GCTGTTTTTGGCAAGGAAGCTGTCGCTCACCAGGGCCGTCTTCTACATCGTGATGCAGTGCCTGGGGGCCATATGCGGCG
CCGGCGTGGTCAAGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCGCCCGGGTACACC
AAGGGGGACGGGCTAGGGGCTGAGATCGTCGGCACGTTCGTGCTGGTCTACACCGTCTTCTCTGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTACTCCTGTAGAATTA---TAG--------TTACAGTGCACCGGCCTGCC
GGCGGCGGCCACCCTGGG-----TGCTTGGTTTGGACTGACTGATGATCAGGTGATGTGA------------AACTAATC
AAAACTGGTGGGAAACATGCAGATTTTGGCGCCGCTTCCCATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACGGGGACCGGCATCAACCCGGCGAGGTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGAC
CACGTAAGATTAGAATC------------------------------------AATTTGATATGAATCATTCATTAGTT-
----AATTA-------------------------------AGCTTGAAGATGATCATGGATGGCTTGGAGCTGGCTAGAG
ACTAATCAG-------TGATCTGCTTGAAATTGTGCAGTGGATCTTCTGGGTTGGTCCGTTCATCGGTGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGACTAGTCAGCCAATCAGTCTGCCGACCATGG
ACGGG-----TGGAATCTTATCGCTGTTCATCGTCGATCGATCATGTGGTGGTGGTTGCCCGTGCGT-------------
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>chr6D_789
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-------------------------------------------------------------------------ATCATCC
ACTAATCAAGAAGTGGCAGCAA-AAATTAAACCAAGAAAACAAAACATTATCATCACACACACAC---CATGCATAGTAG
AGCAGCCATGATTGA----CCCTCTATAAGAAGCTCTCCAAAGACACTCCCTCTCCTCATCTCTCTCTCTCTCTCACACA
CACACACACATCATCTCCT-----CCGCCTCTC--------AACCAA------GCCAAGAGCTCAGTGAAGCACCACCGG
CCATGGAGGGCAAGGAGGAGGACGTGCGCCTGGGCGCGAACCGCTACTCGGAGCGCCAGCCCATCGGCACGGCGGCGCAG
GGCGGCGGCGCGGACGAGAAGGACTACAAGGAGCCGCCCCCGGCCCCGCTCTTCGAGGCGGAGGAGCTCACCTCCTGGTC
CTTCTACCGGGCCGGGATCGCCGAGTTCCTGGCCACCTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGG
TGGGCA------ACCCTTCGGGGTCCAAG---------------TGCGGCACGGTCGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCGGTCACCTTCGG
GCTGTTTTTGGCAAGGAAGCTGTCGCTCACCAGGGCCGTGTTCTACATGGTGATGCAGTGCCTGGGCGCGATATGCGGGG
CTGGGGTTGTCAAGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCGCCCGGGTACACC
AAGGGGGACGGCCTCGGGGCCGAGATCGTCGGCACGTTCGTGCTGGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTACA--T---------ACGTGC--------ATACAGTGCACCGGT-GGCC
GGCAGCGGCCACCG---------TGTTTGGTTTTGTC----------A--------ACGACTGACGAATTGAA-------
---------------ATTGCAGATCCTGGCCCCGCTTCCGATCGGATTCGCGGTGTTTCTGGTGCACCTGGCGACGATCC
CCATCACGGGCACCGGCATCAACCCGGCGAGGTCGCTGGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGAC
CATGTAAGA-----ATC------------------------------------AATTTAATATCAATCATTCATCAGTT-
----AATTACTCGACCGTGCATGCTTAGGAAGAATCAAAGAGCTTGATGATGATCATGCATGTTTTGGAGCTAGCTAGAG
ACTAATCAG-------TGATGTTTTTGGCATTGAGCAGTGGATCTTCTGGGTTGGCCCGTTCATCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCCGGGCGATCCCCTTCAAGAGCCGCGACTAG--------------------------
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>chr6B_789
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------ATCATCC
ACTAATCAAGAAGTGGCAGCAA-AAAATAGACCAAGAAAACAAAACATTATCAT--CACACACAC---CATGCATAGTAG
AGCAGCCATGATTGGCTGGCCCTCTATAAGAAGCTCTCCAAAGACACTCCCTCTCCTCATCTC--------TCCCTCTCA
CACACACACATCATCTCCT-----CCACCTCTCT----C--AACCAAGCCAAGGCCAAGAGCTGAGTGAAGCACCCGCGG
CCATGGAGGGCAAGGAGGAGGACGTGCGGCTGGGCGCGAACCGCTACTCGGAGCACCAGCCCATCGGCACGGCGGCGCAG
GGCGGCGGCGCGGACGAGAAGGACTACAAGGAGCCGCCCCCGGCCCCCTTCTTCGAGGCCGGGGAGCTCACCTCCTGGTC
CTTCTACCGGGCCGGCATCGCCGAGTTCCTGGCCACCTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGG
TGGGCA------ACCCGTCGGGGTCCAAG---------------TGCGGCACGGTCGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCGGTCACCTTCGG
GCTGTTCCTGGCCAGGAAGCTGTCGCTCACCAGGGCGGTGTTCTACATCGTGATGCAGTGCCTGGGGGCCATATGCGGCG
CTGGGGTTGTCAAGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCGCCGGGGTACACC
AAGGGGGACGGGCTTGGGGCTGAGATTGTTGGGACGTTCGTGCTGGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTAGTCCTATGAACTATATGCAG--------ATACAGTGCATCGGCAGGCC
GGCGGCGACAACCGTTCT-----TGTTTGGTTTGGGC----------G--------GTGA------------AACTAATC
AAAGCCGGTGGGAAACATGCAGATTTTGGCGCCGCTTCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCCACGATCC
CCATCACGGGCACCGGCATCAACCCGGCGAGGTCCCTGGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGAC
CACGTAAGT-----AGAATCAACATCCTCCACCATTATTG---GCTCGACCGTG--------------------------
------TTA-------------------------------AGCTTGATGATGATTATGGTTACGAGCTGC---------G
ACTAATCTCATGGACATGATCTGATTGAAATTGTGCAGTGGATCTTCTGGGTGGGTCCGTTCATCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGACTAGTCCACCAATCAACCAGCTGCATG---
-CGGA-----TGGAATCTTATCG---------------------------------------------------------
--------------------------------------------------------------------------------
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------
>chr6B_862
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------CAG
AGCGGCCATGATTGGCC--CCCTCTATAAGAGGCACTCCAAACCCACTCCCATTCCTCATCTC--------TCCATCTCT
CACGCACCCATCTACATCT-----TCTCCTCCGCGCAGC--AACCAAGCCAAGCTC------------GAGCG---GCGG
CAATGGAGGGCAAGGAGGAGGACGTGCGCCTGGGCGCGAACCGCTACTCGGAGCGCCAGCCCATCGGCACGGCGGCGCAG
GGCGGCGGCGCGGACGAGAAGGACTACAAGGAGCCGCCCCCGGCGCCCCTCTTCGAGGCGGAGGAGCTCACCTCCTGGTC
CTTCTACCGGGCCGGCATCGCCGAGTTCCTGGCCACCTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGG
TGGGCA------ACCCGTCGGGGTCCAAG---------------TGCGGCACGGTGGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACATCAACCCCGCGGTCACCTTCGG
GCTGTTCCTGGCCCGGAAGCTGTCGCTCACCAGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCGATATGCGGGG
CTGGGGTTGTCAAGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCGCCCGGGTACACC
AAGGGTGACGGGCTGGGCGCCGAGATCGTCGGCACGTTCGTGCTGGTTTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTACA--T---------ACGTGC--------ATACAGTGCACTGGT-GGCC
GGCGGCGGCCACCGCAGG-----TGTTTGGTTTTGTC----------A--------ACGACTGACGAATTGAA-------
---------------ATTGCAGATTTTGGCGCCGCTTCCGATTGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACCGGCACGGGCATCAACCCGGCGAGGTCGCTCGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGAC
CACGTAAGT-----AGAAACAACATCCTCCACCATTATTA---GCTCGATCGTGCTTA----------------------
--------------------------------------------------------------------------AGCTT-
ACTAATCTCATCGATATGATCTGTTTGAAATTTGGCAGTGGATCTTCTGGGTTGGTCCGTTCATCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCAATCCCCTTCAAGAGCCGCGACTAG--------------------------
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>chr6A_862
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-----------------------------------------------------------------------------CAG
AGCGGCCATGATTGGCC--TCCTCTATAAGAGGCACTCAG-ACCCGCTCTCTTTCCTCATCTC--------TCTCACCCA
TCCACCATCTCCAAGC-------------------CAAGCTAACCAGCTCAAGCTC------------AAGCG---TCAG
CAATGGAGGGCAAGGAGGAGGACGTGCGCCTGGGCGCCAACCGCTACTCGGAGCGCCAGCCCATCGGCACGGCGGCGCAG
GGCGGCGGCGCGGACGAGAAGGACTACAAGGAGCCGCCCCCGGCGCCCCTCTTCGAGGCGGAGGAGCTCACCTCCTGGTC
CTTCTACCGGGCCGGCATCGCCGAGTTCCTGGCCACCTTCCTCTTCCTCTACATCTCGGTGCTCACCGTGATGGGCGTGG
TGGGCA------ACCCGTCCGGGTCCAAG---------------TGCGGCACCGTTGGCATCCAGGGCATCGCCTGGAGC
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGACACATCAACCCCGCGGTCACCTTCGG
GCTGTTCCTGGCCAGGAAGCTGTCGCTCACCAGGGCGGTATTCTACATGGTCATGCAGTGCCTGGGCGCCATATGTGGCG
CCGGCGTGGTCAAGGGGTTCCAGACCACGCTGTACCAGGGCAACGGCGGCGGCGCCAACTCCGTCGCGCCGGGGTACACC
AAGGGGGACGGGCTCGGTGCGGAGATCGTCGGCACGTTCGTGCTGGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCG
CAGCGCCAGAGACTCCCACGTCCCCGTAAGTACTCCT---------ATGTAG--------ATACAGTGCACCGGCCGGCC
GGGGGCGACCACCGTACC-----TGTTTGGTTTGGGC----------A--------GTGAGTTAGTAGATGAAACCAGTC
AAAACTGATACGGTGATTGCAGATTTTGGCGCCTCTTCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACGATCC
CCATCACGGGGACCGGCATCAACCCGGCGAGGTCCCTCGGCGCCGCCATCATCTACAACAAGAAGCAGGCGTGGGACGAC
CACGTAAGATTAGAATC------------------------------------AATTTGATATGAATCATTCATGAGTT-
----AATTA-------------------------------AGCTTGAAGATGATCATGCATGGTTTGGAGCTGGCTAGAG
ACTAATCAG-------TGATCTGCTTGAAATTGTGCAGTGGATCTTCTGGGTTGGTCCGTTCATCGGCGCGGCGCTGGCG
GCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGACTAG--------------------------
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>chr2D_1090
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-----------------CAAGGACTACTCCGACCCGCCGCCGGCGCCGCTCTTCGACGCCGAGGAGCTGACCAAGTGGTC
ACTCTACCGCGCGGTCATCGCCGAGTTCGTGGCCACGCTGCTCTTCCTCTACATCACCGTGGCCACCGTCATCGGGTACA
AGCACCAGGCGGACCCCGCCGGCCCCAACGCCGCCGACGCGGCCTGCAGCGGCGTCGGCATCCTGGGCATCGCCTGGGCG
TTCGGCGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGTGTCTCGGGCGGACACATCAACCCGGCGGTGACCTTCGG
GCTGTTCCTGGCGCGCAAGGTGTCCCTGGTGCGCGCGCTGCTCTACATCATCGCGCAGTGCCTGGGCGCCATCTGCGGCG
TGGGGCTCGTCAAGGGGTTCCAGAGCGCCTTCTACGTGCGCTACGGCGGCGGCGCCAACGAGCTCAGCTCCGGCTTCTCC
AAGGGCACCGGCCTCGCCGCGGAGATCATCGGCACCTTCGTGCTCGTCTACACCGTCTTCTCCGCCACCGACCCCAAGCG
CAGCGCCCGTGACTCCCACGTCCCGGTAAGT-------------------------------------------------
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>chr2A_1340
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------------------------------------------------GGCGGGCACATCAACCCGGCGGTGACCTTCGG
GCTGTTCCTGGCGAGGAAGCTGTCGCTGACCCGGGCGGTGTTCTACATCATCATGCAGTGCCTGGGCGCCATCTGCGGCG
CCGGCGTGGTGAAGGGGTTCCAGCAGGGCCTGTACATGGGCAACGGCGGCGGCGCCAACGTGGTGGCGCCCGGCTACACC
AAGGGCTCCGGCCTCGGCGCCGAGATCATCGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAG
GAACGCCAGGGACTCCCACGTTCCCGTGAGTGCC--T---------ACCATCACCGCCGCTCTGTTCTTCCCCCTGTTGA
ATTTCCTTACC------G-----TGCTTACTTAAAACTTAATGGTGTGTGCAACGTCGA---------------------
-------------------CAGATCCTCGCCCCGCTGCCCATCGGGTTCGCCGTGTTCCTGGTGCACCTGGCCACCATCC
CCATCACCGGCACCGGCATCAACCCGGCGAGGAGCCTCGGCGCGGCCATCATCTACAACAGGGAGCACGCCTGGTCAGAC
CACGTGAG------------------------------------------------------------------------
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------
>SNPs
----------S-S-----------S------S----S-S------S----S---------------S-------------
-S--------S---S-------S--S-----S--S-SS-S-------S-S-S-S------------SSS-----------
-------S-----S----SS----S----SSS---------------S-------S----S-S---S-S-S---------
---S--------S--S-----------------S-----------------------S------S---------------
----------SS----------------------------------------------------------------SS--
-----------------------------------------------------------------S--------------
------------------S--------------------------------------S----------------------
--------------------------------------------------------------------------------
------------------------------------------------S--S----------------------------
----------------------------S---------------------------------------------------
-----------------------------------------------------SSSS-SS--------------------
----------------------------------S---------------------------------------------
-------------------SSSSS--------------------------------------------------------
-------------------------------------------------------------------S-----S------
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---------------------S--------------------------------------------S-------------
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------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
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-------------------------------------------------S----S-------------------------
--------------------------------------------------------------------S-----------
-S----------------------------------SSS-----------------S---------------S-------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
S--------------------------------------S-----------------------------------S----
----------------S----------------------------------SSS--------------------------
----S-S-----------------------S-S--S-SS-------SS-S----S--------------------S----
--------------------S----------S--S-----SSSSSSSSSSSS----------------------------
---------S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_397
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---------------------------------------------------------TTATTATCCCTCCCCCGCCT---
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------
>reverse_2437
--------------------------------------------------------------------------------
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------------------------------------AGCGTGTGTGTCCTTCAGTC------------------------
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------
