>input_sequence_61441
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----------------------------------------------------ATGGCTTCTTCTCCCTCTCCGTCGGCTG
CTCGTGCCCTGCTCGTCCTCGCCGCAGCAGCTCTGGTGCTGAGCTCTG-------TGTCAGCCGCGGC------------
TGGCTCGCCGCCGCTTGCCAAGGGCCTGTCGTTCGACTTCTACAGCGCCAAGTGCCCGCAGGCGGAGGCCATCGTCTTCT
CCTTCCTCAAGGACGCCGTCCGCAAGGACGTCGGCCTCGCCGCGGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGGCTCCGTGCTCCTCGACAAGACCAACGGCGTCGACAGCGAGAAGGTGTCTCCTCCGAACGTCACGCT
CCGTCCGTCCGCGTTCAAGGCCATCAACGCCATCCGCGCGCTCCTCCAGAGGGCGTGCGGCGGGCCCGTGGTCTCCTGCG
CCGACATCGCCGCGCTCGCCGCCCGCGACTCCGTCCACCTGGCCGGCGGGCCGAGGTACGCCGTCCCGCTCGGCCGCCGC
GACGGGCTCGCCCCCGCGTCCCTGGACACCATCTTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTCCCCGTGCTCCTCAG
CTTCCTGGCCAAGATCGGCCTCGACGCCGACGACCTGGTGGCGCTGTCCGGCGCGCACACGCTGGGGATCGCGCACTGCG
GCTCCTTCGAGGAGCGGCTGTTCCCCAAGGAGGACCCCACCATGAACAAGTGGTTCGCCGGCCACCTCAAGCTCACCTGC
CCGCGGCTCAAGGTGGACAACTCCACCGCCAACGACATCCGCACGCCGGACGTGTTCGACAACAAGTACTACGTGGACCT
GCTCAACCGGCAGGGCCTCTTCACCTCCGACCAGGACCTGCACACCGACGCCGGGACAAAGCCCGTGGTCACCAGGTTCG
CCGTCGACCAGGGCGCCTTCTTCGACCAGTTCGTCAAGTCCATGGTGAAGATGGGGCAGATCAACGTGCTCACCGGCAAC
CAGGGTCAGATCCGCTCGGACTGCTCCCTGCCCAACGCCGCCCGCAGCAGCGCCGGCGACGAGCTGCCCTGGTCTGTCGT
CGAGGCCGCCG---AGAGCTTCGTGTTGTAG-------------------------------------------------
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>chr3D_1_TraesCS3D01G518200
ACTCATAAAAAATACCCCCTATGTAAAGAAATATAAGAGCGTTTAGATCACTAATTCTATAAAAAAAAGCTTATGTGTCT
CCCCAGCAAGTGGAAGTATTGCATCTAGTCAGCACATATATTGTCGTTAGCTAGAGAAAAAGGTGGACATTTGGTCGTGT
TCCTTTGTTGAGTGCATGAACCTGAACCTGATCTTGTGGCAAGCACACACACTAGCCAATTAAGAAGAGTATAAAGCGAA
GAACCCGTGCAGCTGCTTCCTAGCCGCCAGCCTGCTTTTAAGCACGGGTGAATTAGTTAAAGCCGACGACTGCCTTTAAT
CATGACGACGCATTCTAAACAAATTTCTAACGGAAGAGAAAGGTGCAGTGCATGCATGGTCAGTGCAAGCGGGAGAGTGA
ACACATAGAAGTACTA---TCTAGCTAAGGCGTAGCAAGGCGAGTATTATAGTTTAGGAGAGTTG---------------
----TGTGATGATTGTTAGAAGTAATTAACCACATGTTAATTAAGGGATCAATCCCTGCCTGTTCTAACTGCATGCAGGC
AGTTGCCTAGTGTCGCGTCGATGGGTTTC-----------------------AAGCACACGC------------------
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-----------------CC--------AGCGTCTCGATCTCCGCCCTGTATAAGAAT-----------------------
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---------------TAAGAGGCATCTTTATCAAATAAAGAAACTGCTGATCATTTACTCTTGGTCGTCATTTGCCTCTG
TTTACAGTTGCTTTCAGCAGTGATCAGTA---------------------------------------------------
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-------------------------ATCGTCGTTAGCCGCCTCCCGGCAAGTTGAGGAATCTGCTGTACGTTTGCTTTCA
AAAAAACATCTCCGGATGCATGCATGTGTACGCATGCCTGCATCG-----------GCCAATCATTTTCCTCCTTTCAAA
TATTTGACTTGACCACC---------------------------------------------------------------
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---------------------------------------------------------CTGCATGCGCGGTAGTTTCCAGC
CTCGGCTCCACCGGTGCAGGTGC-------------------ATGATC---------------GATCGAGCTCCATGTCA
GCCAGATAAGATTCATGGAGA------------ATGCACGCGCGCCTATAAAAACCCACGCACACCTCCAAGCTCAA---
---------CACAGCCACATC--------------CTA-------GGTCACCATGGCTTCTTCTCCCTCTCCGTCGGCTG
CTCGTGCCCTGCTCGTCCTCGCCGCAGCAGCTCTGGTGCTGAGCTCTG-------TGTCAGCCGCGGC------------
TGGCTCGCCGCCGCTTGCCAAGGGCCTGTCGTTCGACTTCTACAGCGCCAAGTGCCCGCAGGCGGAGGCCATCGTCTTCT
CCTTCCTCAAGGACGCCGTCCGCAAGGACGTCGGCCTCGCCGCGGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGGCTCCGTGCTCCTCGACAAGACCAACGGCGTCGACAGCGAGAAGGTGTCTCCTCCGAACGTCACGCT
CCGTCCGTCCGCGTTCAAGGCCATCAACGCCATCCGCGCGCTCCTCCAGAGGGCGTGCGGCGGGCCCGTGGTCTCCTGCG
CCGACATCGCCGCGCTCGCCGCCCGCGACTCCGTCCACCTGGCCGGCGGGCCGAGGTACGCCGTCCCGCTCGGCCGCCGC
GACGGGCTCGCCCCCGCGTCCCTGGACACCATCTTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTCCCCGTGCTCCTCAG
CTTCCTGGCCAAGATCGGCCTCGACGCCGACGACCTGGTGGCGCTGTCCGGCGCGCACACGCTGGGGATCGCGCACTGCG
GCTCCTTCGAGGAGCGGCTGTTCCCCAAGGAGGACCCCACCATGAACAAGTGGTTCGCCGGCCACCTCAAGCTCACCTGC
CCGCGGCTCAAGGTGGACAACTCCACCGCCAACGACATCCGCACGCCGGACGTGTTCGACAACAAGTACTACGTGGACCT
GCTCAACCGGCAGGGCCTCTTCACCTCCGACCAGGACCTGCACACCGACGCCGGGACAAAGCCCGTGGTCACCAGGTTCG
CCGTCGACCAGGGCGCCTTCTTCGACCAGTTCGTCAAGTCCATGGTGAAGATGGGGCAGATCAACGTGCTCACCGGCAAC
CAGGGTCAGATCCGCTCGGACTGCTCCCTGCCCAACGCCGCCCGCAGCAGCGCCGGCGACGAGCTGCCCTGGTCTGTCGT
CGAGGCCGCCG---AGAGCTTCGTGTTGTAGTTAGTGG---GCTTTAGTCGGT----TCATCTCTAGCTGTTTGTTTCCT
-CCGCAATGGTTTGGACTCTGGATGTGAGAGTGATCGCGTGTG-TAAGTTTGTCAAGCAACGAGAAATATTACTGTGGCC
CTCGTGTAATC-GGATCCAGAAATACATGGTTGTGCTAACTTGGGAGGAGAAGAGCTCTCTTGTCCATCTTTTTAATATA
TTTCTTCTCAAGTAATCTATACAGTGCTAGATATGTTACTATTATGTTTTTCAACAGAAGCTCCCAAATGATGTTGTGCC
TCCGCTGATGTATGTCGAAGGTCAGATGTAAATTGTTTGCGTATGGCCATGGACGGAGGGTTTCGACATACTCAGAC---
-TTCTCAAACACACGGAGGCCTCAAAATCAAAGGATGAAGA-AAAAATTGACTGGGCGAAGGCCACGAATTGGAG-----
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----ACCGGTGGATCTCTATGCTCCATAATGAAGAGGGAAGTTTTTTTTCTGTTTTATACTATTTT-CCTGAGAGAGAGG
AGTAGGTCCTAGTACTT-TCATGTGCTAGGAAGTTATTTACCTA-AATGATAACAATTAGCTAGTAGTGGTTACCTTATG
ATGCTCATTATAGTGACATGTTGTTATATCACTACAATGATAATGAGTTGTTATATCATTGCTACTGTATAAAAATTTGT
ATAAGGAGTATAAATGTACTGAAATGAAATAAGGTATAGTAGTGGCGCGGGGTAATACCCAGCACTACTGCTATTTAGCA
ATAGCGTGGGTCCTACCCCACACAACTACTGAGAAATTTAGTAGCAGTACCCTCTTGCTACTACTAAAAGTTAGCTGCAG
CGCTCTAGCAGTAGCACGATCCCTGAACCGTTTTTTTTTTCTTTTTATTTTTTTATTTTTTCTATTTCTTTTTTGATCCT
TTTTTTGTTTTCTTTTTTGCTTTTCCATCTTCATTTTTATTCTTGTTTTTTAGTTTGCGAAAATCTTTGAAGTTCCCCTT
TTTTCTAAACTGTGAAGC
>chr3B_24
TAAATAT----------------------AACATAAGAGCTCTTAGGTCACTAATTCTATAAAGAAAACGTATGTCTCTC
CCCAAGCAAGTGGAAGTATTGGATCAAGTCGACACAGATGTTGTCATTCGCTAGAGAAAAAGGTGGGCATTTGGTCTTGC
TCCTTTGTTGAGTGCATGAACCTGAACCTGATCTTGTGGCAAGCACAATCACTGGCCAATTAAGAAGAATATAAAGCGAA
GAACCCGTGCAGCTGCTTCCTAGCCGCCGGCCTGCTTTTAAGCACGGGTGAATTAGATAAAGCCGC-CACTGCCTTTAAT
CATGACGATGCATTCTAAACAAATTTCTAACGGTAGAGAAAGC-----TGCATGCATGATCAGTGCAAGTGGGGGAGC-A
ATACATAAAAGTAGCAGTGTCTAGCTAAGGCGTAGCAAGGCGAGTATTATAGTCTAGGAGAGTTGTGTGAGGAAATTTTC
CTACTGTGATGATTGTTAGAAGTAACTAACCACATGTTAATTAAGGGATCAATCCCTGCCTGTTCTAAC----TGCAGGC
AGTTGCCTAGTGTCGCGTCGATGGGTTTCTGCTGATAACTGCCATCTCTTTCAAGCACACGC------------------
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-----------------CCCCCTTCAGAGCGTCTCGATCTCCGCCCTGTATAAGAGGCA---------------------
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------------------------TCTTCATCAACTAAAGAAACTGCTGATCATTTACTCTTGGTCGTCATTTGCCTCTG
TTTACAGTTGCTTTCAGCAGTGATCAGTAATTAACGGCATCTGCTGATGTGTCAAAGTCGAAAGCTAGCCTACACATCAT
AGTTAGGTTGCTTAGGGCATGAACAAGGCCGACCCTCAAATCACTCACATACATCCGAACCGCACAGTCCGGACGTGTTG
TGCCATTCAACACGGGTCTGTATCAATCCGCGGGGCGGTCCCGATACACCTTCTTTCGCAAACAAAAGACAAATTTGTGG
GGGTTTACGGGCGTCCGGACAATACCCACGCCCGTTTCTGACAACCTTGGCTCACACAAACACTCCTCCCTCGCCCGCGC
GTTCCTGTCCGGCGCCAGTTGCCTGCATTCATGTCAACTCACGGCGGCCGCTCTACATTGAAGTCAGCTCAGAGCGGACG
CGACTTCTCATTGTCTATGCCTGCCATTGAAGCAGCGTGCCGTCCAAGGGCGCCACCCGCTGCATGCCCGGCTGAACATG
CTTCCTCGCCGCATTCAAACGGCAGAAAACTACCCGCCTTCCTCCATTAAACCCGTGTGTGCCTAGATACCTACTCCGGC
CACAAGTCCGTTCGCTAGCAGACCGGCATTAAACACAACGCCAGTTGGCTCCTCGCGTCCGCCCGCTATTTAAACGATGC
CAGCCGTTGCGCAAGAACCGAACCACACTTTTGTTCCCCATTTCTTCCTTGAACAATTTTCTCCATGGCACCCGGCGAGC
AGGCAGAAGAGTTCTCCGGCATAAAAGCCGCCTGGGTGGCCCGTCGATCCCACCGGTCACAAGCCCAGCATCTGTCTGTT
CCACCTCCATCGACGCTCTAGGCTAGCTCGCGGAGGCTGAAGCTCCAAGCCGACACGTGGTTCAACTCACCAAGGAGTGG
CTACTGTGGACGACGTTGTGTCGTACCCCACCTCCCATGCCTGCGACCGCGCCATCTGCCATTAATGCATGCGTAACCGC
TCCTTGCCGGCAGAGAAAGAAAATGGCTACGTGGACATCCACGAGGCGGCAGCAAGCATGAAGGCCACCACCGAGGCAAC
GCCGGCATAGACAACCGGTCTCTTACCCTTTGGGTAGGCCACCGTTGCCTCCCTACCTAAAAAACCAACCCTGATCCGTG
CATCTTAGGGCACCCTTCCCCTCCGGTTGAAGCATCAGCAGGCGGTTCCACTCCATTGAGTAGTGGGGAAGCGAGCCGCC
CATTGCGCTAAGGCATATACCTCCGAGGCTCATAGCCGCCAGACATGGAAAAGACAATGGATATCCGCCGCAACCGGCAT
TAGACTAGTCAATGGTATCCATGTCGTCGGAATGGAAATCCACCGGCACCGGGCGTAGACTAGTTTTATTTTTGTCCGGT
ATTGTTCTTAGTTAAAATAACATAAAAAATGTAATGAATTTCATCCTGTTTTATGAAATCTGATCTTGTGTCTACATGTA
TTTCATCCGATTAGTTTAAAAAGTGATTGAAATGTAGGACGGACAACGTTGATGGCGATCTCCAGCGTCATTGTCTGCGG
ATTAATTCCCTGTACGCGGACAGACGCGGGAACAAATTTACGGGTCAAACTTTGGAGATGCCCTTTAGATAAGCCACACT
CACATTGCTCTACGCCTCTGCCTGGATCGTCGTTAGCCGCCTCCCTGCAAGTTGAGGAATCTGCTGTACGTTTGCTTTCA
AAAAAACATCTCCGGATGCATGCATGTGTACGCATGCCTGCATCG-----------GCCAATCATTTTCCTCCTTTCAAA
TATTTGACTTGACCACCTGGATTTCAGGACGTAGGAGTGAATAGAGATGAAAATGAAGTGGAAAGTTTCTGTTTTTCCGG
ATAAAAAATGGAAACGAAGAGGAAATATGAAAACGGAAACGGAATTTTGCAAAATGAAAATGGAAATGGAATTTTTTATG
CGGAAATGGAAACAAAAACGGAATGGTGTTTTTCGGTGGAACACACGTGGAAACGGAACTTTCCATTTCCGTCAATATGG
AATTTCCGTTTCTTCCATAGGGCCATGGCTGCTTTGTAGCCCAACTACCAAACAACACACAATGACACAATGAGTAGAAT
GAGCATAATGTATCATTTGAGTACCAACTTTTACTACCACACACATACTCAGCTAGACTCTATACTGAATTGTCATGTAC
TACTATAATACTATCCTATATTACCAACACAACCATATCATTTTGTAGCCATGTTAAGGATTCCATCAATTTGTTTGTTT
TTATGTATTTTGCTATGATTCAAGGGGGGTTTAAGTTCCGGTTAACACACAGTTTTGATTCCATGTCCGCTCTGTATTCA
CTCCGTGTTTGTTTCCGGTAGTATATGTTTTCGCATTCATTTTCGGGGTTTCTGTATTCGTTTCCGCTTTTATAAAAAAA
TATGAAAACAAATATGATAGCATTCAGTTTCGTCCGTTTCTGCGCCGTTTTCATCCTTAGGAGTGAATTGGGAGATGCCA
GATACGTCTGTAAGACTGTTTCCGTAAGCCCGGTCCGTAAGTCTATCATTTTCGCATCTGCATGCGCGGTAGTTTCCAGC
C-----------GGTGCAGGTGC-------------------ATGATC---------------GATCGAGCTCTATGTCA
GCCAGATAAGAT------------------------CACGCTCGCCTATAAAACCCCATGCACACCTCCAACCTCAACAC
AGGCAGAGCCACAGCCACATC--------------CTA-------GGTCACCATGGCTTCTTCTCCCTCTCCCTCTGCTG
CTCGTGCCCTGCTCGTCCTCGCCGCAGCAGCTCTGGTG-------CTG-------TGTCAGCCGAGGC------------
TGGCTCGCCGCCGCTGGCCAAGGGGCTGTCGTTCGACTTCTACAGCGCCAAGTGCCCGCAGGCGGAGGCCATCGTCTTCT
CCTTCCTCAAGGACGCCATCCGCAAGGACGTCGGCCTCGCCGCCGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGGCTCCGTGCTCCTCGACAAGACCAACGGCGTCGACAGCGAGAAGGTGTCTCCCCCGAACGTCACGCT
CCGTCCGTCGGCGTTCAAAGCCATCAACGACATCCGCGCCCTGCTCCAGAGGGCGTGCGGCGGGCCCGTGGTCTCGTGCG
CCGACATCGCGGCCCTCGCCGCGCGCGACTCCGTCCACCTGGCCGGCGGTCCGCGGTACGCCGTCCCGCTCGGCCGCCGC
GACGGGCTCGCCCCCGCGTCCCTGGAGACCATCTTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTCCCCGTGCTCCTCAG
CTTCCTCGCAAAGATCGGCCTGGACGCCGACGACCTGGTGGCGCTGTCCGGGGCGCACACGCTGGGGATCGCGCACTGCG
GCTCCTTCGAGGAGCGGCTGTTCCCCAAGGAGGACACCACCATGAACAAGTGGTTCGCCGGCCACCTGAAGCTCACCTGC
CCGCGACTCAAGGTGGACAACTTCACCGCCAACGACATCCGCACGCCCGACGTGTTCGACAACAAGTACTACTTGGACCT
TCTGAACCGGCAGGGCCTCTTCACCTCCGACCAAGACCTGCACACCGACGCCGGGACCAAGCCCGTGGTCACCAGGTTCG
CCGTCGACCAGGGCGCCTTCTTCGACCAGTTCGTCAGGTCCATGGTGAAGATGGGGCAGATCAACGTGCTCACCGGCAAC
CAGGGCCAGATCCGCACGGACTGCTCCCTGCCCAACGCTGCCCGCA---GCGCCGGTGACGAGCTGCCCTGGTCTGTTGT
CGAGGCCGTCG---AGAGCTTCGTGTTGTAGTTAGTGG---GCTTTAGTCGGT----TCATCTCTAGCTGTTTGTTTCCT
-CCGCAATGGTTTGGACGCTGGATGTCAGAGTGAT--CGTGTG-TAAGTTTGTCAAGCAATGAGAAATATTACTGTGGCC
CTCGTGTAATC-GAATCCAGAAATACATGGTT-TGCTAACTTGGGAGAAGAAGATTTCTCTTGTCACCTTTGTTAAT---
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>chr3A_270
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-----------------------------GCCTGCTTTTAAGCACGGGTGAATTAGATAAAGCCGCTCACTGCCTTTAAT
CATGACGACGCATTCTAAACAAATTTCTAACGGAAGAGAAAGC-----TGCATGCATGATCAGTGCAAGTGGGGGAGC-A
ATACATAAAAGTAGCAGTGTCTAGCTAAGGCGTAGCAAGGCGAGTATTAT------------------------------
-------------TGTTAGAAGTAATTAACCACATGTTAATTAAGGGATCAATCCCTGCCTGTTCTAAC----TGCAGGC
AGTTGCCTAGTGTCGCGTCGATGGGTTCGTGCTGATAAGTGCCATCTTTTTCAGCCTGGTCACAATGGAGAGGAACTTAG
GAGTAATATCACATACTTCAATACAACTTTGCTTATGTGTTACATATTTAATGAAGAAAGAGGTGCTTGTGATAACTAGC
TAAGTTACCGGAACATCACACACTTCAAGAAACAATGAGTCTATAACTTAATAAATACATTGTTGCATAACACTACATAG
ATGTTCCTATCCACTGTGGAGGTAGTAACATAGTATAAGGAAGTGTGTAAGTTACTAGACTATGTTCTTGCCCATTGTGA
CCAGCCTCAAACACACGCCCACTTGAGAGCGTCTCGATCTTCCCCCTGTATAAGAGCATCTCCAACAGGCGTGGCAAAAC
GCGCGCCCGCGCGGTAAAAGCAGTTTTTCGCGCGCGTCGGTTGGTTCCGCGCGCTCCAGCGGTGGCGGGAAGTTACCGCG
CGCGGGGGAGAAAGCGGCACGCGGCGCGGTAGATTTGGCGCGCCGCTTCACGCGCGCCTATAAAGTCCCGCGCTTCGCCA
CGCGCCCTCTTCCTCGCAACCTCGCCGCTTTCTGCGCCACCACCGCGCCACCATGCCGCCGCGCCGCCAGGGTGCTTCGG
GCTTTCGCAACGTCCGCGAGCGCCCCAACGGCTGGTACTCTGCCGAGATACGGTCCGCCGACGTCCGGCTCGGCCTCGGG
ACGTTCCGAAGCGCGCGCAAGGCGGCCCGCGCGTACGACGCGGCGACGTGGCGCTTGGAGAGGCCCCGGTCGCAGATGAA
TTTCCGGGACATCTTCACGCGCGAGGAGGCGCAGCGCCTCGCCCCTCCGCCGCGTCTCATCACGGACATGGACCGTGCCA
ACCACTCTCGGCGGCAGCGCCGTCTCCTCGTCGCCGAAGAGGACGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCCA
GAGGACGTCGACGCCGAGCGTGCCTACTGGGCGGAGAGGACGGCAAGGCGCCGCTCGGAGCGGGCGGACCGGCGTCAGCG
GAAGGCAGTGGCGAACGAGCAGTGCGACATCGTCTCCGCAGGTGGGAGGTCATTATTCACCTCGGACGATGAACGTTGGG
ACGACATATGGCTCTCAACCTCGGACGACACCGACGAGAGTGATGATGGTGATGATAGCGACTTGGAGTAGTTTTCTATC
TATGTATGCCGTAGTAGTTTCTATCTATCTATCTATCTATGCCGTAATAGTATCTATCTATCTATGTATGTCGAATTATA
TATCTATCTCTGCCGTAGTAGTTGCACCGATGTAAAATATCTTTGTATCGTTTTTTTTATCTATGTAATTTTAATTTAAA
AAATATTGTAGAATGAGCGCGCGCTGCATTTTACCGCACCTGCTGAAGCTGCGCGCGCGCGGCTTTTCAGCGCGGCTGCT
GGAGCAAACGCTGCGCGCCGCGCCAAATCAGGCGATGGGCACACGTCAAATCTGTTTTTACCGTGCGGCGCGTCGGGCGC
ATGTTGGAGATGCTCTAAGAGGCGTCTTCATCAAATAAAGAAACTGCTGATCATTTACTCTTGGTCGCCATTTGCCTCTG
TTTACAGTTGCTTTCAGCAGTGATCAGTAATCAACGGCATCTGATGACATGTCAAAGTCGAAAGCTAGACTACCCATCAT
AGTTAGGTTGCTTAGAAAGCCAGTCAGAC---------------------------------------------------
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-----TGCTCTCCGCCTCTGCCTCGATCGTCGTTAGCCGCCTCCCGGCAAGTTGATGAATCTGCTGTACGTTTGCTTTCA
AAGAAATTCTCG-----GCATCCATGTGTACGCATGCCTGCATCGTCGACTCGTCGGCCAATCATTTTCCTCCTTTCAAA
TATTTGACTCGACCACCC--------------------------------------------------------------
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----------------------------------------------------CGCATCTGCATGCGCGGTAGTTTCCAGC
CTCGGCTCCACCGGTGCAAGTGCATCGCATCCACTGCACAGTATGATC---------------GATCGAGCTCCATGTCA
GCCAGATAAGATTCATGGAGA------------ATGCACGCGCGCCTATAAAAACCCACGCACACCTCCAACCTCAACAC
AGGCACAGCCACAGCCACAGC--------------CACATCCTACGATCACCATGGCTTCTTCTTCCTCTCCGTCGGCTG
CTCGTGCCCTGCTCGTCCTCGCCGCAGCAGCTCTGGTG-------CTGAGCTATGTGTCCGCCGCGGCT---GGTGCTGG
TGACTCGCCGCCGCTTGCCAAGGGCCTGTCGTTCGACTTCTACAGTGCCAAGTGCCCGCAGGCGGAGGCCATCGTCTTCG
CCTTCCTCAAGGACGCCATCCGCAAGGACGTGGGCCTCGCCGCCGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGGCTCCGTGCTCCTCGACAAGACCAACGGCGTTGACAGCGAGAAGGTGTCTCCCCCCAACGTCACGCT
CCGTCCGTCGGCGTTCAAGGCCATCAACGACATCCGCGCGCTCCTCCAGAGGGCGTGCGGCGGGCCCGTCGTCTCCTGCG
CCGACATCGCGGCCCTCGCCGCGCGCGACTCCGTCCACCTGGCCGGCGGTCCGCGGTACGCCGTACCGCTCGGCCGCCGC
GACGGTCTCGCCCCTGCGTCCCTGGACACCATCTTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTCCCTGTTCTCCTCAG
CTTCCTGGCCAAGATCGGCCTGGACGCGGACGACCTGGTGGCGCTGTCCGGCGCGCACACGCTGGGGATCGCGCACTGCG
GCTCCTTCGAGGAGCGGCTGTTCCCCAAGGAGGACACTACCATGAACAAGTGGTTCGCCGGCCACCTCAAGCTCACCTGC
CCGCGACTCAAGGTGGACAACTCCACCGCCAACGACATCCGCACCCCCGACGTGTTCGACAACAAGTACTATGTGGACCT
GCTGAACCGGCAGGGCCTCTTCACCTCCGACCAGGACCTGCACACCGACGCCGGGACCAAGCCCGTGGTCACCAGGTTCG
CCGTCGACCAGGCCGCCTTCTTCGACCAGTTCGTCAAGTCCATGGTGAAGATGGGGCAGATCAACGTGCTCACCGGCAAC
CAGGGCCAGATCCGCACGGACTGCTCCGTGCCCAACGCCGCCCGCA---GCGCCGGCGACGAGCTGCCCTGGTCCGTCGT
CGAGGCCGCCG---AGAGCTTCGTGTTGTAGTTAGTAG---GCTTTAGTCGGT----TCTTCTCAAGCTGTTTGTTTCCT
TCCGCAATGGTTTGGACTTTGGATGTCAGAGTGAT--CGTGTGTTAAGTTTGTCAAGCAACGAGAAATATTACTGTGGCC
CTCGTGTAATCGGAATCCAGAAATACATGGTTGTGCTAACTTGGGATGAGAAGATTTCTCTTGTCACCTTTGTTAAT---
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>chr3B_767
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--------TCTCCGGATGCATGCATGTGTACCCATGACTCGGAGTCGA--TCGTCGACCAATCATTTCCCTCCTTTCAAA
TATTCGAGTCGATCAGATCGAGCACCGC----------------------------------------------------
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---------------------------------------------------------------GCGCGGTAGTTTCCAGC
CTCGGTTCCACCGGTGTAGGTGC-------------------ATGCACACGAGTCACCAGTAGGACCGAGCTCCATGTCA
GCCAGCAGACAAGATTCCATGGAGGTTGCATGCATGCGCGCGTGCCTATAAAACAACACGCACACCTCCAAGCTCAGTAC
ACCCACAGCCACATTTGTCCTACTTAGAGACCCAGCTA-------GATCACCATGGCTT------------CCTCGGCTG
CTCGTCTCCTGC---TTGTCTTCGCGACAGCTCTGGTG-------CTGAGCTCTGTGTCTGCAGCAGCGGTGGGGGCTGG
TGGCTCGCCGCCGCTGGCCAAGGGCCTGTCGTTCGAGTTCTACCGCGCCAGGTGCCCGCAGGCGGAGGCCATCGTCTTCG
CCTTCCTCAAGGACGCCATCCGCAAGGACGTCGGCCTCGCCGCCGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGGCTCCGTGCTCCTCGACAAGACCAACGGCGTCGACAGCGAGAAGGTGTCTCCCCCGAACGTCACGCT
GCGTCCGTCGGCGTTCAAGGCCATCAACGCCATCCGCGCGCTCCTCCAGAAGGCGTGCGGCGGGCCCGTCGTCTCCTGCG
CCGACATCGCCGCGCTCGCCGCCCGCGACTCCGTCCAGCTGGCCGGCGGGCCGCGGTACGCCGTCCCGCTCGGCCGCCGC
GACGGGCTCGCCCCCGCTTCCCTGGACACCATCCTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTGCCCGTGCTCCTCAG
CTTCCTCGCCAAGATCGGCCTCAACGCCGACGACCTGGTGGCGCTCTCCGGCGCGCACACGCTCGGGATCGCGCACTGCG
GCTCCTTCGAGGAGCGGCTGTTTCCCAAGGACGACCCCACCATGGACAAGTTTTTCGCCGGCCACCTCAAGCTCACCTGC
CCGCGGCTCAAGGTGGACAACTTCACCGCCAACGACATCCGCACGCCTGACGTGTTCGACAACAAGTTCTACGTCGACCT
GCTCAACCGGCAGGGTCTCTTCACCTCCGACCAGGACCTGCACACCGACGCCAAGACCAAGCCCATGGTCACCAGGTTCG
CCGTCGACCAGGCCGCCTTCTTCGACCAGTTCGTCAAGTCCATGGTGAAAATGGGGCAGATCAACGTGCTCACTGGCAAC
CAGGGTCAGATCCGCACGGACTGCTCCATTCCCAACGCCGCCCGCAGT---GCCGGCGACGAGCTGCCGTGGTCCGTCGT
CGAGACCGCCGTGGAGAGCTTGGTGTTGTAGGTAGTAGTAGGGTTTAGTCCAT----GGATCTCAAGCTTGTTTTATGTT
TTGGCAA-GGTTTGGACTTTGGAAGTCAGAGTGCA--TGCGTGTTTAGTTTGTTGAGCAA--------------------
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>chr3D_991
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-----------------------------------CTA-------GATCACCATGGCTT------CCTCTCCCTCGGCAG
CTCATCTCCTGC---TTGTCCTCGCAGCAGCTATGGTG-------CTGAGCTCTGTGTCTGCAGCAGCGGTGGGTGCTGG
TGGCTCGCCGCCGCTGGCCAAGGGCCTGTCGTTCGAGTTCTACCGCGCCAGGTGCCCGCAGGCGGAGGCCATCGTCTTCG
CCTTCCTCAAGGACGCCATCCGCAAGGACGTCGGCCTCGCCGCCGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGGCTCCGTGCTCCTCGACAAGACCAACGGCGTCGACAGCGAGAAGGTGTCTCCCCCCAACGTCACGCT
CCGTCCGTCGGCGTTCAAGGCCATCAACGCCATCCGCGCGCTCCTCCAGAGGGCATGCGGCGGGCCCGTCGTCTCCTGCG
CCGACATCGCCGCGCTCGCCGCCCGCGACTCCGTCCACTTAGCCGGTGGGCCAAGGTACGCTGTCCCGCTCGGCCGCCGT
GACGGGCTCGCCCCCGCGTCCCTGGACACCATCCTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTCCCCGTGCTCCTCAG
CTTCCTCGCCAAGATCGGCCTCAACGCCGACGACCTGGTAGCGCTCTCCGGCGCGCACACGCTCGGGATCGCGCACTGCG
GCTCCTTCGAGGAGAGGCTGTTCCCCAAGGACGACCCCACCATGGACAAGTTTTTCGCCGGCCACCTCAAGCTCACCTGC
CCGCGGCTCAAGGTGGACAACTTCACCGCCAACGACATCCGCACGCCTGACGTGTTCGACAACAAGTTCTACGTCGACCT
GCTCAACCGGCAGGGTCTCTTCACCTCCGACCAGGACCTGCACACCGACGCCAAGACCAAGCCCATGGTCACCAGGTTCG
CCGTCGACCAGGCCGCCTTCTTCGACCAGTTCGTCAAGTCCATGGTGAAAATGGGGCAGATCAACGTGCTCACTGGCAAC
CAGGGTCAGATCCGCACGGACTGCTCCGTGCCCAACGCCGCCCGCAGT---GCCGGCGACGAGCTGCCGTGGTCCGTCGT
CGAGACCGCCGTGGAGAGCTTGGTGTTGTAGGTAGTAGTAGGGTTTAGTCCAT----GGATCTCAAGCTTGTTTTATGTT
TTGGCAA-GGTTTGGACTTTGGAGGTCAGAGTGCA--TGCGCGT------------------------------------
--------------------------------------------------------------------------------
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>chr3A_1014
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CCTTTCCCTCGGCTG
CTCGTCTCCTGC---TCCTCGTCGCAGCAGCTCTGGTG-------TTGAGCTCCGTGTCCGCCGCCGCT---GGTGCTGG
TGGCTCGCCGCCGCTGGCCAAGGGCCTGTCGTTCGAGTTCTACCGCGCCAGGTGCCCGCAGGCGGAGGCCATCGTCTTCG
CCTTCCTCAAGGACGCCATCCGCAAGGACGTCGGCCTCGCCGCCGCGCTCCTCCGCATCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGATGGCTCCGTGCTCCTTGACAGGACCAACGGCGTCGACAGCGAGAAGGTGTCTCCCCCGAACGTTACGCT
GCGTCCGTCGGCGTTCAAGGCCATCAACGCCATCCGCGCGCTCCTCCAGAAGGCGTGCGGCGGGCCCGTCGTATCGTGCG
CCGACATCGCCGCGCTCGCCGCCCGCGACTCCGTCCAGCTAGCTGGCGGGCCAAGGTACGCCGTCCCGCTAGGCCGCCGC
GATGGGCTTGCCCCCGCGTCCCTGGACACCATCTTGGGCGCGCTCCCGCCGCCGACCTCCAAGGTCCCTGTGCTCCTCAG
CTTCCTCGCCAAGATTGGCCTCAACGCCGACGACCTGGTGGCGCTCTCCGGCGCGCACACGCTGGGGATCGCGCACTGCG
GCTCCTTCGAGGAGCGGCTGTTCCCCAAGGACGACCCCACCATGGACAAGTTTTTCGCCGGCCACCTCAAGCTCACTTGC
CCGCGGCTCAAGGTGGACAACTTCACCGCCAACGACATCCGCACGCCGGACGTGTTCGACAACAAGTTCTACGTCGACCT
GCTCAACCGGCAGGGCCTCTTCACCTCCGACCAGGACCTGCACACCGACGCCAAGACCAAGCCCATGGTCACCAGGTTCG
CCGTCGACCAAGCCGCCTTCTTCGACCAGTTCGTCAAGTCCATGGTGAAAATGGGGCAGATCAACGTGCTCACTGGCAAC
CAGGGCCAGATCCGCACGGACTGCTCCGTGCCCAACGCCGCCCGCA---GCGCCGGTGACGAGCTGCCGTGGTCCGTCGT
CGAGACCGCCGTTGAGACTTTAGTGTTGTAGGTAGTAG---GGTTTAGTCCATGGATGGATCTCAAGCTTGTTTTATGTT
TTGGCAA-GGTTTGGACTTTGGAAGTCAGAGTGCA--TGCGTGTTTAGTTTGTTGAGCAA--------------------
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>chrUn_1112
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----------------------GGCCTGTCGTTCGACTTCTACCGGCGGACCTGCCCGCGGGCGGAGTCCATCGTGCGCG
AGTTCGTCCAGGACGCCGTGCGCAAGGACATCGGCCTCGCCGCGGGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGCCTCCGTGCTGCTCGACGGCTCGGCCACGGGGCCGGGGGAGCAGCAGGCGCCGCCCAACCTCACGCT
CCGCCCATCCGCCTTCAAGGCCGTCAATGACATCCGTGACCGGCTGGAGCGCGAGTGCCGCGGGGCCGTCGTCTCCTGCG
CCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTGGTCGTCTCCGGCGGGCCTGACTACCGCGTGCCCCTCGGCCGCCGC
GACAGCCGCAGGTTTGCCACGCGGCAGGACGTCCTGTCCGACCTGCCGGCGCCGTCCTCGAACGTGCCGTCCCTCCTCGC
CTTGCTCCGGCCACTCGGCCTCGACGCCACCGACCTCGTCACGATCTCCGGCGGCCACACCGTCGGGCAGGCGCACTGCT
CATCTTTCGAGGACCGCCTCTTCCCGCGCCCCAACCCCACCATCAACCCTCCCTTCCTCGCCAGGCAGAAGGGAACCTGC
CCGGCCAAGGGCACCGACCGCCGCACCGTGCTGGACGTGCGCACGCCCAACGTGTTCGACAACCAGTACTATGTCGACCT
GGTGAACCGGGAGGGGCTCTTCGTCTCCGACCAGGACCTCTTCACCAACGACATCACCCGGCCCATTGTCGAGCGCTTTG
CGCGGAGCCAGCGGGACTTCTTCGAGCAGTTCGGCGTGTCCATGGGCAAGATGGGCCAGATGAGGGTGCGCACCAGCGAC
CTGGGAGAGGTCCGTCGGAACTGCTCC-----------------------------------------------------
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>chrUn_1112
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----------------------GGCCTGTCGTTCGACTTCTACCGGCGGACCTGCCCGCGGGCGGAGTCCATCGTGCGCG
AGTTCGTCCAGGACGCCGTGCGCAAGGACATCGGCCTCGCCGCGGGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGCCTCCGTGCTGCTCGACGGCTCGGCCACGGGGCCGGGGGAGCAGCAGGCGCCGCCCAACCTCACGCT
CCGCCCATCCGCCTTCAAGGCCGTCAATGACATCCGTGACCGGCTGGAGCGCGAGTGCCGCGGGGCCGTCGTCTCCTGCG
CCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTGGTCGTCTCCGGCGGGCCTGACTACCGCGTGCCCCTCGGCCGCCGC
GACAGCCGCAGGTTTGCCACGCGGCAGGACGTCCTGTCCGACCTGCCGGCGCCGTCCTCGAACGTGCCGTCCCTCCTCGC
CTTGCTCCGGCCACTCGGTCTCGACGCCACCGACCTCGTCACGATCTCCGGCGGCCACACCGTCGGGCAGGCGCACTGCT
CATCTTTCGAGGACCGCCTCTTCCCGCGCCCCGACCCCACCATCAACCCTCCCTTCCTCGCCAGGCAGAAGGGAACCTGC
CCGGCCAAGGGCACCGACCGCCGCACCGTGCTGGACGTGCGCACGCCCAACGTGTTCGACAACCAGTACTATGTCGACCT
GGTGAACCGGGAGGGGCTCTTCGTCTCCGACCAGGACCTCTTCACCAACGACATCACCCGGCCCATTGTCGAGCGCTTTG
CGCGGAGCCAGCGGGACTTCTTCGAGCAGTTCGGCGTGTCCATGGGCAAGATGGGCCAGATGAGGGTGCGCACCAGCGAC
CTGGGAGAGGTCCGTCGGAACTGCTCC-----------------------------------------------------
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>chr7D_1112
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----------------------GGCCTGTCGTTCGACTTCTACCGGCGGACCTGCCCGCGGGCGGAGTCCATCGTGCGCG
GCTTCGTCCAGGACGCCGTGCGCAAGGACATCGGCCTCGCCGCAGGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTG
CAGGGCTGCGACGCCTCCGTGCTCCTCGACGGCTCGGCCACGGGGCCAGGGGAGCAGCAGGCGCCGCCCAACCTCACCCT
CCGCCCCTCGGCCTTCAAGGCCGTCAACGACATCCGCGACCGGCTGGAGCGCGAGTGCCGCGGCGCCGTCGTCTCCTGCG
CCGACATCCTCGCGCTCGCCGCCCGCGACTCCGTGGTCGTCTCCGGCGGGCCCGACTACCGCGTGCCTCTTGGCCGCCGT
GACAGCCGCAGGTTCGCCACGCGGCAGGACGTGCTGTCCGACCTGCCGGCGCCCTCCTCGAACGTGCCGTCCCTCCTCGC
CCTGCTCCGGCCCCTCGGTCTCGACGCCACCGACCTCGTCACGATCTCTGGCGGCCACACCATCGGGCAGGCGCACTGCT
CCTCCTTCGAGGACCGCCTCTTCCCTCGTCCCGACCCCACCATCAACCCCCCATTCCTCGCTAGGCTGAAGGGGACGTGC
CCTGCCAAGGGCACCGACCGACGCACCGTGCTGGACGTGCGCACGCCCAACGTGTTCGACAACCAGTACTATGTCGACCT
GGTGAACCGGGAGGGGCTCTTCGTCTCCGACCAGGACCTCTTCACCAACGACATCACCCGGCCCATCGTTGAGCGCTTTG
CACGAAGCCAGCGGGACTTCTTCGAGCAGTTCGGCGTGTCCATGGGCAAGATGGGCCAGATGAGGGTGCGCACCAGCGAC
CTGGGAGAGGTCCGCCGGAACTGCTCCGCCCGCAACCCCGGCCCAG---CCGCCGCCGACGAGCT---------------
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>chr4D_2253
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--------------------------------------------------------TCACTAGTCCATCTTTTTCATACA
TTCTTCTTATGTACAC---TACATTATTAACTATGTTATT-TCATGTTCTTCAACGGAAACTACCGGATGATGTTGTGCC
TCCGCTGATGTATGTCGAAGGTGAGATGACAATTGTTAGCGTACATCCATGAACGGAGTGTATCGAATGTGCATACTTGA
ATTCTCAAGCAGATGGAGGCCTCAAAATCGGAGGATGGAGAAAAATATTGAATGACCGCAGCCCATAAATAGGAGATCAA
TGGACTTTCCTCTTTTACTCCCAAGCTCAAATGCTCCCTCATGAATAGTAAACTCGAAAAAAAATAAAAAAAAATAAAAA
ATTCTGAAAATTTTTGTGGTAATTTTTGACAAATGTTTTGCATGCATACCAAAATTCAGCACGAAATGACATTAGTGGAA
GTCAAGGCAAAAAAAGCAAAATCAGCAATCCAAAATGTCTTCAAAACTAGCATTTTTGGAGCATCGATTTTGTTTTTTCG
CCACGACTTCCACCGATGTCATTTCGCGCTGAAATTTTGCATGCATACAAAACATTTGTCAAAGTTTACAAAAAAATCAG
ATTTTTTTGATTTTTTTATTGTTTATTTTCAATTTAACTGTTCATGAGGGAGCATTTGAGCTCGGGAGCAAATACTCCAC
GTCCACTGGTGGATCTCTTTGCTCCATAATGGATATGGAGGC--TTTTTCTGTTTTATACTATTTTACCTAAGAGAGAGG
AGTTGCTCGTAGTACTTGTCATGTGCTAGGAAGTTATTTACCTAGAATGATAACAATTAGCTAGTAGTGGTTAACTTATG
ATGATCATTATGGTGAGACATTGTTATATCACTACAATGATGATGAGTTGTTATATCA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------SS----S----------------S----SS-SSSSSSSSS
---S-----------------S---S----SS----S--S-----S--S-----------------S---------S--S
-----------------------------------------------SS----S--------------S-----------
----------------------------S---------------------------S--------SSS------------
------------------------------------------SSSSSS----------S----------S---S---SS-
-S-----S-----SS--------------------------------------S--------------------------
---------------------------------------------------------------------SSSS-------
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-------------------------------------------------------SS-----------------------
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-----------------------S----S---------------------------------------------------
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--------------------------------------SSSSSSS-----------------------------------
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-----------------------------------------------------------------S--------------
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---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------S-------------------------------SS-------------------------------
--------------------------------------------------------------------------------
--------------------------S--------SS-------------------------------------------
-------------S----------------------------------------SS----------------------S-
--SS-SS-SSSSSS-SSSS----S-SS--SS-------S-S-S-----S------S---S--S--SS-------------
----------------------S-----SS-------S-----SSS-----S------S--S----SSSSSSSSSSS---
--------S--S-S---------------SS------S-------S-----S--SS--S--S---SS---S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-----------S------------S-S-S---S-SSS--------------------------S---------
---S-S--S----------------------------------------------------------------S------
---S-------S----S-SS---------------------S----------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_553
--------------------------------------------------------------------------------
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-----------------------------------------------------CCCTGCCTGTTCTAACTGCA-------
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>reverse_6409
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--------ACACACGGAGGCCTCAAAAT----------------------------------------------------
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------------------
