>input_sequence_61399
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----------------------------------------ATGGCAGAGAAGGTCAGCACCCTCTTTCTCACTCTCTCTC
TCTCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCATTTGCAAGATAGTGTATTTATGTTGT
ACAAGTTTTGCGTGTTTGTCTTGCATGTTAT------------------ATGCCTGTGTTGTCA---ACGACACAGATCT
CCACGCTGATCCTCAAGGTTGATCTTGGGTGCTGCCCGTGTTACAAAAAGATCCGCAAGATCCTTTGCAAACTCCAAGGT
ACGTGCGTACGCTGAAATTAACCTT-ACATCCATGCATGCTTCTGATCCT------------------------------
--------------AGCAGACGTAATTTACAATTTTGATGGAAATGGACC------------------------------
----------TGCATGTACGTGCAGATGAGGAGAGGATCAGGACCATCTCCTACGACGATGGGAACCATACGATCGCGGT
GGCCGGCCCGTTCGACCCGCACAAGCTCTCCTGCAAGATCAGGTGCAAGGGACGGAAGCTGATCAAGGGCATCCACATCC
TGCAACACAACGGCGGTGCCGAGCCGCCGGCAATGAACAACGGTAAGAACAATCACAAGGGGAAGACCAAGGAGCCACCG
CCATCATCGCCAATTCATGAGCCACCCCCGCCGCCACCCGTGGACGAGAAGCCACCGTCACCCGTGCAGCCGGCTCCCCC
TGACAGACACGTGTCACCGGTGATGGAGGCGACGATCGAGGAGAAGAAGCCGGGGGAGAACCCTGCCGAGCTAAAGCTGC
CGCCGTTGGGTTCTTCATCACCGGCGGCGGCGGAGCCAGTAGTGGAGCAGGTGAGGCCCGTTTCGCCGGTCGACGTGAAG
CCACCGCCGGTGGAGATCCCTTCGTGGCCGGCACCACCGCAACCAATGGCAATGGGACACTGCGGCTGCTCCTGCTGCAA
GCCGTGCTACCAGGGGTACTACGAGGGGTGCAGGTGCTGCAGCTGCGGCAGGGTGTACGGCTACGCCGTCAGCGTCGTGC
CGACGCCGGCGGGGGCGGGGTGCTACGCAGG------CGGGGGGTACAG---CAGGTCGGCCTGCCAACTCTTCAGCGAC
GAGGATCCCACCAGTGCTTGCACCATCATGTGA-----------------------------------------------
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>chr2A_1_TraesCS2A01G000800
ACGGGAGGAGGGACTGGGGAAGGAGATGGAAAGAGGAGGAGGGAGTCGGGCCGAATCGGACCTATGACCGGAGCTGCGGA
GATCCGTGGGCCTCGCCGCCGAGCTCCCTGGTGGTCGCCGCTCGTTCCTCCCCCTTCTTTTCCTTTTGCTCGAGGAGGCA
GGGGATAAGGCAGCGAGGGGGTACGTTTTGCGGGAAAGGCCAATTCGGAGCAAATCGCAGCGCCAAGGCTCTGTATTGTG
GAACGAAAGTTTGGTGGGAGGGAATACAAAGCTGGATTGGGTTTCGTTTCCAAGCGACAATTCACAGTCCAGCCAAACAG
CTGAGGCCTTCTTTGGTTCATAGGATAGAAATTTTATAGGAATAGGAAAATCATAGGAAGTGAGATGACATGCATCTCAA
TTCCTATAGAGGAAGAGATGTCATTTGATGCATAGGATAGGAATTTTTCCATTGAGTCTAGGCTAATGTTTTTTTTCCTC
CAAAATGTGAAGGATTGAATCCTATCCTACATAGGAATAGGAATCCATTCCTACAAACCAAAGGGCCTCAAAGGAATTTT
TCCTTTGCAAATCCTATCTTATAAAATTCCTATAAAATTCCTACAAACCAAAGGAGGCCTGAATTGCAATTTGGAGAATA
CCAAATCCATTTCAGGCATCTCAATTGGGACATCCAAACGCAGTGTTAAATGAAAAGGACCGTCTTCATTGGATCGGAGA
AAAAGATTGGAAGGAGCTTATTTGCAAAGAAATTATTAATAGGAGGTTGGTGACAATCTGGAGTTACTAGCAAATAAGTA
CAGCTCTGACTAGGAAATAAATCAAATAAATTTGGCTATTGAAACTAACGAATTGCATGCCTAATCAGTTAATTGGGGAA
TTAGGAAACTCATTACTTGTCCCTGCAATTTATATGCCTCGCTCTCTTCTCCCCACTCAAGGCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCATGTAGGAAGCCACATGGAAAGCATGGCAGAGAAGGTCAGCACCCTCTTTCTCACTCTCTCTC
TCTCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCATTTGCAAGATAGTGTATTTATGTTGT
ACAAGTTTTGCGTGTTTGTCTTGCATGTTAT------------------ATGCCTGTGTTGTCA---ACGACACAGATCT
CCACGCTGATCCTCAAGGTTGATCTTGGGTGCTGCCCGTGTTACAAAAAGATCCGCAAGATCCTTTGCAAACTCCAAGGT
ACGTGCGTACGCTGAAATTAACCTT-ACATCCATGCATGCTTCTGATCCT------------------------------
--------------AGCAGACGTAATTTACAATTTTGATGGAAATGGACC------------------------------
----------TGCATGTACGTGCAGATGAGGAGAGGATCAGGACCATCTCCTACGACGATGGGAACCATACGATCGCGGT
GGCCGGCCCGTTCGACCCGCACAAGCTCTCCTGCAAGATCAGGTGCAAGGGACGGAAGCTGATCAAGGGCATCCACATCC
TGCAACACAACGGCGGTGCCGAGCCGCCGGCAATGAACAACGGTAAGAACAATCACAAGGGGAAGACCAAGGAGCCACCG
CCATCATCGCCAATTCATGAGCCACCCCCGCCGCCACCCGTGGACGAGAAGCCACCGTCACCCGTGCAGCCGGCTCCCCC
TGACAGACACGTGTCACCGGTGATGGAGGCGACGATCGAGGAGAAGAAGCCGGGGGAGAACCCTGCCGAGCTAAAGCTGC
CGCCGTTGGGTTCTTCATCACCGGCGGCGGCGGAGCCAGTAGTGGAGCAGGTGAGGCCCGTTTCGCCGGTCGACGTGAAG
CCACCGCCGGTGGAGATCCCTTCGTGGCCGGCACCACCGCAACCAATGGCAATGGGACACTGCGGCTGCTCCTGCTGCAA
GCCGTGCTACCAGGGGTACTACGAGGGGTGCAGGTGCTGCAGCTGCGGCAGGGTGTACGGCTACGCCGTCAGCGTCGTGC
CGACGCCGGCGGGGGCGGGGTGCTACGCAGG------CGGGGGGTACAG---CAGGTCGGCCTGCCAACTCTTCAGCGAC
GAGGATCCCACCAGTGCTTGCACCATCATGTGATTCTTC-AGTCTTCTTTTGCGCATATTGTTTGCTGAGAAACCTTTTT
TTTTTTGTTTTAATTAAGGAATGTTTGCTGAGAAAGCTTTTTT-TTGTTACTCCGTGTTGACTTTCAATAACTAGAACAT
GAAAGTGCGTCTTGCTGCGCCCACCCATGTTCAGAAAATAATGAAAGATATTTGGAAAATAATGATTACAATGACATTCG
TGGTATAATTTTATTGGTTTGAGTTATGACACGCGGTGTGAAGGTCTCGCATGTTTGTTTACAAAATCAAACTTCCTACT
TTATCTTTATCAACAACCC--AAGTTTTTCTCAAGTTGTGTATT--------------GATTTGTCGAAATAACATTG--
--------AGAATAAGACAATTGTTAAGTCTTAGTTTAAACAGTGGTAAAACATGATGCATGAAATGCGCAATAACACTG
ATCTTGTAAGTGCACTACATGTTGTACTTTTGTTTGAGAGATATTGCATTGCACCAAAGCTCGTCAAGTACAGGGTAACC
AACATTAGTTGGAAGATTAGGAGGTGGAATTGGATAAAGATTATATTACTTTGTAGAATGATTGTGTTGGTGATCAAGCC
GTTGGAACTTAATATAGTAGACTAACTGAAAGTAAAGTTGTTTATTCAAGTATGTTAATCTTAAAATACTAAATTGACAC
TTTTTGAAACATACACATCACCAACAACACCAA--CTTATGAAAACATGCAGTGCTAAACATGGG----CATATCTACAA
CTATCAGCTTAACCAACAATACCAAAACTTATGAAAACATGCAATACTAA------------------------------
----ATTGTGATGTTATACTCATCTCCAATCCTTCTAGTGAAAGGAAGATATGTTCTATAATTATGGGTAGAGAAGTACA
GGCATTAGGTCAACTCCAACGCTCGACCCAAAATGGACGTCCGTTTTGTCCGGATTTTGTCCGCTTAGGTCAGGCAAAGG
GGCGGCGTCCGGCCGTTTTCCTGGATGCGTTGGCAGCGCGCCCAACGCGGCCGACGCATCT
>chr2D_1063
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----------------------TGTGTGTGTGTGTGTGTGTGGTTTTTAAGCAATTCTACAA------------------
-------TTGTGTGTTTGTGTTGCATGTTATTGGGCATTTGAGATTTATATGTTTGTGGTGTCA---ACGACACAGATCT
CCACACTAATCCTCAAGGTTGATCTTGGGTGCTGCCCGTGTTACAAAAAGATCCGCAAGATCCTTTGCAAACTCCAAGGT
ACGT----ACGGTGAAATTCTT-------------------------------TATCTCCTCAAGAATTGGACATTACAT
ACCATCTGATCACAAGCAGACGTAATTTGCAATTTTGATGGAAATGGATCCGTATGTATGTATGTATA------------
--------TATGTATGTACGTGCAGATGAGGAGAGGATCAGGACCATCTCGTACGACGATGGGAACCATACGATCGCGGT
GGCCGGGCCGTTCGACCCGCACAAGCTCTCCTGCAAGATCAGGTGCAAGGGACGGAAGGTGATCAAGGGCATCCACATCC
TGCAACACAACGGCGGTGCCGAGCCGCCGGCAATGAACAACGCTAAGAACAATCACAAGGGGAAGACCAAGGAGCCACCG
CCATCATCGCCAATTCATGAGCCACCCCCGCCGCCACCCGTAGCCGAGAAGCCACCTTCGCCGACGCAGCCGGCTCCCCC
TGACAGCCACGTATCACCGGTGATGGAGGCGACGATCGAGGAGAAGAAGCCGGAGGAGAACCCTGCCGAGCTAAAGATGC
CGCCGTTGGGTTCTTCATTACCGGCGGCGGCGGAGCCAGTAGTGGAGCAGGTGAGGCCCGTTTCGCCGGTCGACGTGAAG
CCACCGCCGGTGGAGATCCCTTCGTGGCCGGCACCACCGCAGCCG------ATGGGACACTGCGGCTGCTCGTGCTGCAA
GCCGTGCTACCAGGGGTACTACGAGGGGTGCAGGTGCTGCAGCTGCGGCAGGGTGTACGGCTACGCCGTCAGCGTCGTGC
CGACGCCGGCGGGGGCGGGGTGCTACGCAGGTGCAGGCGGGGGGTACAG---CAGGTCGGCCTGCCAACTCTTCAGCGAG
GAGGATCCCACCAGTGCTTGCACCGTCATGTGATTCTTCCA--------TTGCACCTATTCTTTGCTCAGAAAGCTTTTA
TTGTTTTG--------AGAAATGGTTGCTTAGAAAG----TTTTGTGTTACTACTTCAC----TCCAATAACT--AACAT
GAAAGCGCGCGTTGCTGCGCCCGCCCATGTTTACAAAATAATGAAAGATAGTTGGAAAATAATTATTACGCTGAGATTCA
TGGTATAATTTTATTGGTTTCAGTTATGACACACGATGTGAATGTGGGGCATGTTTGTTTACAAAATCAAATTTCCTAGT
TTATCATTATCAACAACTCTTAAGTATTTCTCAAGTTGTGTATTAAGAATTGTGTAGTGATTTGTCAAAATAACATTTTA
ACATTGAAAGAACAAGGGAAATGTTAAGTCTCTTTTTAAATAGTGGTAAAACATGATGCATGAAATGCACACTAACACCA
ATCATGTAAGTGCACTACGTGTTGAACTTTTGTTTGAGAGAT-----ATTGCACCAAAGCTCGTCAAGTACAGG-TAACC
AACATTAGTTGCAAGATTAGGAGGCGGAACTGGATAAAGATTATATTACTTTGTAGAATGATTGTGTTGGTGATCAAGCC
GTCGGAACTTAATATAGTAGGCTAACTGAAAGTAAAGTTGTTTCTTCAAGTATGTTAATCTTAAAATGCAAAACTGACAC
TTTTTGAAACATACACATCACCAACAATACCAAAACTTATGGAAACATGCAATGCTAATATTGGG----CATATCTACAA
CTATCAACTTAAACA-----------------------------------------------------------------
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>chr2B_1148
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---------------------------TTAT------------------ATGTTTGTGGTGTCGACGACGACACAGATCT
CCACGCTAATCCTCAAGGTTGATCTTGGGTGCTGCCCGTGTTACAAAAAGATCCGCAAGATCCTTTGCAAACTCCAAGGT
ACGTGCGTACGCTGAAATTAACCTTTACATCCATGCATCTGGCCATCTTTATCTATCTCCTCAAG---------------
------------------------------AATTTTGATGGAAATGGATCCGTATGTATGTATGTATGTATGTATGTATG
TATGTATGTATGTATGTACGTGCAGACAAGGAGAGGATCAGGACCATCTCGTACGACGATGGGAACCATACGATCGCGGT
GGCCGGGCCGTTCGACCCGCACAAGCTCTCCTGCAAAATCAGGTGCAAGGGAGGCAAGGTGATCAAGGGCGTCGACATCC
TGCAACACAACGGCGGTGGCGAGTCGCCGGCAATGAACAACGGTAAGAACAATCACAAGGGGAAGATAAAGGAGCCGCCG
CGATCATCGCCAGTTCATGAGCCACCCACGCCGCCACCCGTGGCCGAGAAGCCACCGTCGCCCGTGCAGCCGGCTCCCCC
GGACAGCCACGTATCACCGGTGATGGAGGCGACGATCGAGCAGAAGAAGCCGGGGGAGAACCCTGTCGAGCTAGAGCTGC
C---GTTGGGTTCTTCGTTCCCGGCGCCGGCGGAGCCAGTAGTGGAGAAGGCGAGGCCCGTTTCGCCGGTCGACGTGAAG
CCACCGACGGTGGAGATCCCTTCGTGGCCGGCACCACCGCAACCAATGGCAATGGGACACTGCGGCTGCTCCTGCTGCAA
GCCGTGCTACCAGGGGTACTACGAGGGGTGCAGGTGCTGCAGCTGCGGCAGGGTGTACGGCTACGCCGTCAGCGTCGTGC
CGACGCCGGCGGTGGCGGGGTGCTACGCAGGCGCAGGCGGGGGGTACAGTTACAGGTCGGCCTGCCAACTCTTCAGCGAG
GAGGATCCCACCAGTGCTTGCACCGTCATGTGATTCTTC-A--------TTGCGCCTATTCTTTGCTCAGAAAGCTTTTA
TTGTTTTGATAT------AAATGGTTGCTTAGAAAG----TTT-GTGTTACTATGTGTTGACTTCCAATAACTGT-----
---------------TGCGCCCGCCCATGTTTACAAAATAATGAAAGATAGTTGGAAAATAATGATTACACTGGGATTCA
TGGCATAATTTTATTGGTTTCAGTTATGACACACGATGTGGATGTGGGGCATGTTTGTTTACAAAATCAAATTTCCTAGT
TTATCTTTATCAACAACTCTTAAGTATTTCTCAAGTTGTGTATTAAGAATTATGTACTGATTTGTCAATATAACATTTTA
ACATTGAAAGAACAAGGGAAATGTTAACTCTCTATTTAAATAGTGGTAAAACATGAT-----------------------
--------------------------------------------------GCACTAAAGCTCTGCAAGTACAGGTTAACC
AACATTAGTTAGAAGATTAGGAGGCAGAATTGGATAAAGG----------------------------------------
--------TTAATATAGTAGACTGACTGGAAGTAAAGTCACTTCTTCAAGTATGTTAAACTTAA---------TTGACAC
TTTTCAAAACATACACATCTCCAACAATACCAAAAGTTATGAAAAGATGCAATGCTAATATTGGGTAGGCATATCTACAA
AGCTCGTCGGCTTAAATAACACGGCCTTTGCACATTATATGTGCATCTACCGGCTGAGCAAGGATCGTAGTGGTATCCTT
GCACATTGTGATGTTGTACTCATCTCCAATCCTTCTAGTGAAAGGAAGATGTGTT-------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------------------SS-S-SSS-SS---SSSS-SSSSSSSSSSSSSSSSSSS
SSSSSSS---S--------S--------------------------------SS----S---------------------
-------S------------------------------------------------------------------------
--------------------------------------SSSS-SSSSSS-------------------------------
----------------------------S-------------------S-------------------------------
------------S-------------------------------------S-----------------------------
------S---------------------------------------------------S---------------------
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-------------------------------------------S---------------S--------------------
------S-----S-------------------------------------------------------------------
------------------S-------------------------------------------------------------
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-------------------------------------------------------------------------------S
------------------------S----------------SSSSSSSS------S----S------S-----S-----S
--S---SSS-SSSSSS--S----S-----S------SSSS----S-------S-----------S--------SS-----
-----S---SS-----------S--------S-S----------------S-------------------S---S----S
--------------------S-----------S--S------S--SSS-----------------------S------S-
-----------------S-------S----------------------------------------S----------S--
------------S---SS--S----------SSS------S---------------------------S--S------SS
---S--------------S-----S-----------------SSSSS---------------------------S-----
------------------------S-------------------------------------------------------
--S----------------------------------------S-----------------------S-S----------
---------------------------S-----------------------S------SSS-------------------
------S-----S---S--S--SSSSSS-SSSS-SS-S---SSSSS---S------------------------------
---------------S----------------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_27
-------GAGGGACTGGGGAAGGAGAT-----------------------------------------------------
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>reverse_1005
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--------------------------------------------CAGAGAAGGTCAGCACCCTC----------------
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>forward_204
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------------------------GTTTTGCGGGAAAGGCCAAT------------------------------------
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>reverse_1012
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---------------------------------------------------GGTCAGCACCCTCTTTCTCA---------
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>forward_298
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--------------------------------------GGGTTTCGTTTCCAAGCGAC----------------------
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>reverse_1767
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------ACACGTGTCACCGGTGATG-------------------------------------------------------
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>forward_1020
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----------------------------------------ATGGCAGAGAAGGTCAGCAC--------------------
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>reverse_3180
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-----------------------------------------------------------TCCGCTTAGGTCAGGCAAAG-
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