>input_sequence_61365
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-----AGTGAGTGCCCTCTTGTCTTGTGCCCTTTTTCAGTTCCTCAGTCTTACGTTTTTCCTTACGTTGTTCATTCCTAA
ATAGGTGGCGAGCTCACCTAAATTGTACTACAGTATTTCTAGGAAATGTGACCTGATTTTTAACTATTA---CATTCAGT
GAGCAAGCGATGCCGCACTACTGGTCTGGTGGCACGAACCACCATGGTGGATTCTGCATCGCTTGAGTTCGTAGTAGACT
ACGAGCAAAACAAGCACTTGGCCGTCGGCAAGTCCGTCCACTCCGACTACATCTCCGCCGGTGGGCACGACTGGAGGATA
CATTGCTACCCGCGTGGGTGGGTGAAAGCCAACAATGGCAAGTATCTCTCTATCTACCTCTACTGCAGCGAACCCGCAAC
TACTGTCAGGGTCATATTCAAGGCCAATGTGATGGGCAGGCATGGCAAACCATCTCCAATAGCAGCAACGTCATCGGTTT
TTGTGTATAGTAGCAAGGACGACATACTATGGCATGGGTGGTCTAGGTTCGTCAAGCGAGTAGATTTGGAGGCAAAATGT
GTGATTGAAGGCCGAGTCACATTCCTCTGCCACATCTTGGTTATGCATGACAACCCAATCCCCGTGCCACCCCCAAAAAT
AGGAAATCATCTCAACAGCCTAATCGATGGAATGGACATGGACGGGACAGATGTGTCATTCACCACCAATGGTGAGACAT
TCCATGCGCATCGAGCAGTGCTTGCTGCCCGTTCTCCGGTTTTCAGAGCCAAATTCTTCGGCCTGGAGGCTGGGGCCACA
TCTTCAAACATCATCTTGGAGGACATTGAGCCCGCGACATTCAAAGTTTTGCTTAAGTTCATGTACACCGATGCCTTGCC
TGGAGATGACAGGGTTTTGCGCTCTCCACCAATTGAGATGTTTCATCATCTGCTTGCTGCGGCGGACAAGTACGCACTGC
ATAGGTTGAAGCTTATCTGCGCCCGAAAGTTAGGGGAGAATGTGTCACTAGATTCTATTGCAACTACTCTAGATTTGGCA
GAGACGAACAGCTGCCTGGAGTTGAAGACAAAGTGCATTGACTC-TTAG-------------------------------
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>chr7B_1_TraesCS7B01G151500
ACCATTTTCACTGTGCACATCAGTCAATAGATTTTTTTTACACAAACATACGGACGCAGATTTGATGAACATGGGTGCGC
GCGCATCTTTTATGAATAGTAAATTTTAAAAATACTAGAAAAAAATCTGAATTTATTTTTATAATATACATAGTCAACCG
GTATACTCGCATATGAAGTTTCACGAAGAAATCACATTTGTGGTAATCTGGACAAAAATGAAAAAACAAAGATAATCGAA
GCTATATTAAAAAAACACTGTTTAATGAATAGTATGATCGCACTAGTATTTTCTTCACTAAGAATACCATAGGTGTCAAT
ACATCATGAAACTTCACACATGAGTAGAATGATCGACTAAGTTTCATACAGCGAAATTTCAGAAATTCTTATTTTTTTTC
TAGTACTCCCTTCGCCCATAATATAAGAACGTTTTTGACACTAATAGTGTCAAAAACGTTCTTATATTATGGGCGGAGGA
AGTATTTTTTATGAATTTATTTTTCACGTGGATGCACGAGCATCCATGTTCACCTTTGTATTTTTTTTTAGATCCGTACA
CAAACATCAGTCAATAGTAGATAAGAACTTTGCCTTGTCGTGCATGACGCACAGTGGACGGAGGGCAGTCCACTAACTTT
GGAGGCCTTTTGAAAAAACGAACTTTGGAGTCACCCACGCTACGTCGTGGGCTAGCCCATCTAAATCACGGGCCGAACCG
TTCAAACGGCAAAAGCGAGCTCCT----------------------------------------GAAAGATCGAAGAGGC
ATCCAGAAAAAAAAACGTTCGCGTGCGACAGCGCGGCGAACCCTAGAGAAGTACT-----ACTGCAGTGGCGGCGCGTGC
ATCGCACGTAGCGAGGGCGATCCGGTGCCGCAAGGCGAGGCGAAAGGAAGGTCGTGGAGGGCGCCCGCCAAAGGAGGACC
AAGGGTTGTCGCCAAGGGAGGACGCCCGCCAAAGGAGGACCGAGTCGCCGGCGAACTTAGGCAGCGGCAAGCCGAGGCGG
AAGGCAGTGAGTGCCCTCTTGTCTTGTGCCCTTTTTCAGTTCCTCAGTCTTACGTTTTTCCTTACGTTGTTCATTCCTAA
ATAGGTGGCGAGCTCACCTAAATTGTACTACAGTATTTCTAGGAAATGTGACCTGATTTTTAACTATTA---CATTCAGT
GAGCAAGCGATGCCGCACTACTGGTCTGGTGGCACGAACCACCATGGTGGATTCTGCATCGCTTGAGTTCGTAGTAGACT
ACGAGCAAAACAAGCACTTGGCCGTCGGCAAGTCCGTCCACTCCGACTACATCTCCGCCGGTGGGCACGACTGGAGGATA
CATTGCTACCCGCGTGGGTGGGTGAAAGCCAACAATGGCAAGTATCTCTCTATCTACCTCTACTGCAGCGAACCCGCAAC
TACTGTCAGGGTCATATTCAAGGCCAATGTGATGGGCAGGCATGGCAAACCATCTCCAATAGCAGCAACGTCATCGGTTT
TTGTGTATAGTAGCAAGGACGACATACTATGGCATGGGTGGTCTAGGTTCGTCAAGCGAGTAGATTTGGAGGCAAAATGT
GTGATTGAAGGCCGAGTCACATTCCTCTGCCACATCTTGGTTATGCATGACAACCCAATCCCCGTGCCACCCCCAAAAAT
AGGAAATCATCTCAACAGCCTAATCGATGGAATGGACATGGACGGGACAGATGTGTCATTCACCACCAATGGTGAGACAT
TCCATGCGCATCGAGCAGTGCTTGCTGCCCGTTCTCCGGTTTTCAGAGCCAAATTCTTCGGCCTGGAGGCTGGGGCCACA
TCTTCAAACATCATCTTGGAGGACATTGAGCCCGCGACATTCAAAGTTTTGCTTAAGTTCATGTACACCGATGCCTTGCC
TGGAGATGACAGGGTTTTGCGCTCTCCACCAATTGAGATGTTTCATCATCTGCTTGCTGCGGCGGACAAGTACGCACTGC
ATAGGTTGAAGCTTATCTGCGCCCGAAAGTTAGGGGAGAATGTGTCACTAGATTCTATTGCAACTACTCTAGATTTGGCA
GAGACGAACAGCTGCCTGGAGTTGAAGACAAAGTGCATTGACTC-TTAGCGGCTAACAAAGATTTCAACAAGGTTGTGTT
AACTGAAAGTTTTGTGCTCTTGGGCCAGAAATTTCCGGCGCTTATTGCTGAGTTGAAAGAGAGGGTTGAGGCATAACATG
AAGAATTTGTCATGCCTAGACATCAAAGTACCTGTATGGGGGAAAACCTTATATGATGAAAATCGTACTGGTTGACTCAT
ATTATAATTGATATGATTATATTGGTACCCTGATGTGCCTGCTGCACTTTTTTATAATGGTACTGCTTTGTTCATTTTAT
AATAGAAAATGAATGATAGTCTGGTACCCTGATGTGCCCGATGCACCTTTTCATACTTGGAATTGTACAACTGAG-----
----TGGTTTCCCTGTAGAAAAAGTGACACCTTATGTGAGTCTTAGCATTTGATTTTGTTGCGTTATCAGTGTATGATAT
CATCATCTCAAGACAATGCATCAATTGAGAAAGTTTGTATCCCGATTTCTCTATTAAAAAGAGAAAACAGTACTGTATGG
TTTCATTAGGTTGCCGTATGGCGGGGTGGTTCATGGCGTACAACTCGTACGCGACCGGTCCATCCGTGTGAAGCGAGGAC
GAGCTGGCGTACATGCGGGAGCAGTGGCTAGACCCAGCGGATGGGACGTTCTCGGCCTTCTAGCCGGAGAGCCCTTCGAG
TGCATGGCGTTCGGCGTTCCACGCAAGGCAGTCGTGTTGTTACTGTACAGGTGCTGTTGCTATTAAAATCTGCCGTTCAT
TTCTATCCAAGCACTCACCTTCCTCTTCCTTAATCCTGTGATTAATTGGGAGCCCGTCCGTCATCCGCAACGTTAGCGAT
GCCTCCTGCCGCCGCCGAAGCTCCATCCACCGCCAGAAACTCCTCCAACATGCACGCCATGATAGACATCTTCATCTGGA
TGTACGCCAATGCCGTCCTGATGCATATCCTCGGCCTTGCGTGGAACGCCGAACGCCATGCACTCGAAGGGCTCTCCGGC
TAGAAGGCCGAGAACGTC
>chr7A_561
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CAAATATCAGTCA---GTAGATAAGAACTTCGCGTTGTCGTGCATGACGCACAGTG-ACGGAGGACAGTCCACGAACTTT
GGAGGCCTTTTGAAAAAACGAACTTTGGAGTCACCCACGCTAGGTCGTGGGCTAGCCCACCTAAATCACGGGCCGAACCG
TTCAAACGACAAAAGCAAGCTCGTTTCGCTAAAAAAAAAAGGCAAAAGCGAGCTCGTGAAAAGAGAAAGATCGAAGAGGC
ACCCAGAAAAAAAAACGTTCGCGTGCGACAGCGCGGCGAACCCTAGAGAAGTAGAGAACGACTGCAGTGGCGGCGCGTGC
ATCGCACGTAGCGAGGGCGATCCGGTGCCGTAAGGCGAGGCGAAAGGAAGGTCGTGGAGGGTGCCCGCCAAAGGAGGACC
AAGGGTTGTTGCCAAGGGGGGACGCC----------GGACCGAGTCGCCGGCGAACTTAGGCAGCGGCAAGCCCAGACGG
AAGACAGTGAGTTCCC-----TCTTGCGCCTTTTTCCAGTTCCCCCGTCTTACGTTTTTCTTTCAGTTGTTCGTTCCAAA
ATAGGTGCCGAGCTCACCTAAATT--------GTACTTCTAGGAAATGTGATCTGATTTTTAACTATTATTACATTCAGT
GAGCAAGCGAGGCCGCACTACTGGTCTGGTGGCACGAACCACCGTGGTGGACTCTGCATTGCTTGAGTTCACAGTAAACT
ACGAGCAAACCAAGCACTTAGCCATCGGCAAGTCCGTCCACTCCGACTACATCTCCGCCGGTGGGCACGACTGGAAGATA
CATTGCTACCCGCGTGGGTGGGTGAAGGCCAACAATGGCAAGTATCTCTCTATCTACCTCTACTGCAGGGAACCCGTAAC
TACTGTCAGGGCCATATTCAAGGCCAATGTGATGGGCAGGCATGGCAAACCATCTCCGATAGCAGCAACGTCATCAGTTT
TTGTGTATAGTAGCAAGGACGACATACTATGGCATGGGTGGTCTAGGTTCGTCAAGCGAGTAGATTTGGAGGCAAAATGT
GTGATTGAAGGCCGAGTCACATTCCTCTGCCACATCTTGGTTATGCGTGACGACCCAATCCCCGTGCCACCCCCAAAAAT
AGGAAGTCATCTTAACAGCCTAATCAATGGAATGGACATGGACGGGACAGATGTGTCATTCACCACCAATGGTGAGACAT
TCCATGCGCATCGAGCAGTGCTTGCTGCCCGTTCTCCGGTTTTCAGAGCCAAGTTCTTCGGCCCGGAGGCTGGGGCCACA
TCTTCAAACATCGTCTTGGACGACATCGAGCCCGCGACGTTCAAAGTTTTGCTTAAGTTCATGTACACCGATGCCTTGCC
TGGAGATGACAGGGTTGGGCGCTCTCCACCGATTGAGACGTTTCATCATCTGCTTGCCGCGGCGGACAAGTACGCACTGC
ATAGGTTGAAGCTTATCTGCGCCCGAAAGTTAGGGGAGAATGTGTCACTAGATTCCATTGCAACTACTCTAGATTTGGCA
GAGACGAACAGCTGCCTGGAGTTGAAGACAAAGTGCATTGACTTATTAGCAGCTGACAAAGATTTCAACAAGGTTGTGTT
AACTGAAAGTTTTGTGCTCTTGGGCCAAAAATTTCCGGCGCTTATTGCTGAGTTGAGAGAGAGGGTTGAGGCATAACATG
GAGAATTTTTCATGCCTAGACATCGAAGTACTTGTATGGGGGAAAACCTTATATGATGAAAATCGTACTGGTTGATTCAT
ATTGTAATTGATATGATTATATTGGTACCCTGTTGTGCCTGCTGCACTTTTTTATAATGGTACTGCTTTGTTCATTTTAT
AATAGAAAATGAATGATACTCTGGTACCCTGATGTGCCCGATGCACCTTTTCATACATGGAATTGTACAATTACCTAGTG
CAATTGGTTTCCCTGTAGAAAAAGTGACACCTTATGTGAGTCTTAGCATTTGATTTTGTTGCGTTATCGGTGTATGATAT
CATCATCTCAAGACAGTGCATCAACTGACAAAGTTCGTATCCCCATTTCTCTATTAAAAAGAGAAAGCAGTACTGTATGG
TATCATTAGGTTG-------------------------------------------------------------------
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>chr7A_2595
GCAGTCGTGTTGTTACTGTACAGGTGCTGTTGGTATTAAAATCTGCCGTCCATTTCTATCCAAGGGCTCTCCTTCCTCTT
CCTTAATCATGTGATTAATCGATAAAACCACCCACGACGACGGCGGTTGCCGGAAAAGGTTGAGAACGCCACGAACGTGA
GCAGCAGGTTCGCCGGTATGTTTCGCAACGCTACTAATCTCAGCGCGAGTAGGTATGGTACGTCGCCCCAGGATTCTGGA
AGAAAAAGAAGACGCTAACATGGGTGCCGAGCGGCGGCTGCGCGAGCCCATCGCCATGGTGCGGGGCTGTGTGAGGAGAT
GAGATAGGAGAAGCCTGACATTCTGTCACGATTCATGGTGAGCCAGGGCGATACAGACGAGAAGCGCGAGTAGGTTCGAT
CTCGACAAGCTGAGGGAGATACACTTGCACGCGGCCATCAAAGGACTCGGTGAACTCGCTACAGGCGCAGGCCGCGGGCG
TCCTTCCTGACGGCACAGCCGT----------------------------------------------------------
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-----------------ATGGCGGGGTGGTTCATGGCGTACAACTCGTACGCGACCGGTCCATCCGTGTGAAGCGAGGAC
GAGCTGGCGTACATGCGGGAGCAGTGGCTAGACCCAGCGGATGGGACGTTCTCGGCCTTCTGGCCGGAGAGCCCTTCGAG
TGCATGGCGTTCGGCGTTCCACGCAAGGC---------------------------------------------------
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>chr5A_2595
GCAGTCGTGTTGTTACTGTACAGGTGCTGTTGGTATTAAAATCTGCCGTCCATTTCTATCCAAGGGCTCTCCTTCCTCTT
CCTTAATCATGTGATTAATCGATAAAACCACCCACGACGACGGCGGTCGCCGGAAAAGGTTGAGAACGCCACGAACGTGA
GCAGCAGGTTCGCCGGTATGTTTCGCAACGCTACTAATCTCAGCGCGAGTAGGTATGGTACGTCGCCCCAGGATTCTGGA
AGAAAAAGAAGACGCTAACATGGGTGCCGAGCGGCGGCTGCGCGAGCCCATCGCCATGGTGCGCGGCTGTGTGAGGAGAT
GAGATAGGAGAAGCCTGACATTCTGTCACGATTCATGGTGAGCCAGGGCGATACAGACGAGAAGCGCGAGTAGGTTCGAT
CTCGACAAGCTGAGGGAGATACACTTGCACGCGGCCATCAAAGGAGTCGGTGAAATCGCTACAGGCGCAGGCCGCGGGCG
TCCTTCCTGACGGCACAGCCGT----------------------------------------------------------
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-----------------ATGGCGGGGTGGTTCATGGCGTACAACTCGTACGCGACCGGTCCATCCGTGTGAAGCGAGGAC
GAGCTGGCGTACATGCGGGAGCAGTGGCTAGACCCAGCGGATGGGACGTTCTCGGCCTTCTGGCCGGAGAGCCCTTCGAG
TGCATGGCGTTCGGCGTTCCACGCAAGGC---------------------------------------------------
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>chr1B_2595
GCAGTCGTGTTGTTACTGTACAGGTGCTGTTGGTATTAAAATCTGCCGTCCATTTCTATCCAAGGGCTCTCCTTCCTCTT
CCTTAATCATGTGATTAATCGATAAAATCACCCACGACGACGGCGGTCGCCGGAAAAGGTTGAGAACGCCACGAACGTGA
GCAGCAGGTTCGCCGGTATGTTTCGCAACGCTACTAATCTCAGCGCGAGTAGGTATGGTACGTCGCCCCAGGATTCTGGA
AGAAAAAGAAGACGCTAACATGGGTGCCGAGCGGCGGCTGCGCGAGCCCATCGCCATGGTGCGCGGCTGTGTGAGGAGAT
GAGATAGGAGAAGCCTGACATTCTGTCATGATTCATGGTGAGCCAGGGCGATACAGACGAGAAGCGCGAGTAGGTTCGAT
CTCGACAAGCTGAGGGAGATACACTTGCACGCGGCCATCAAAGGAGTCGGTGAAATCGCTACAGGCGCAGGCCGCGGGCG
TCCTTCCTGACGGCACAGCCGT----------------------------------------------------------
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-----------------ATGGCGGGGTGGTTCATGGCGTACAACTCGTACGCGACCGGTCCATCCGTGTGAAGCGAGGAC
GAGCTGGCGTACATGCGGGAGCAGTGGCTAGACCCAGCGGATGGGACGTTCTCGGCCTTCTGGCCGGAGAGCCCTTCGAG
TGCATGGCGTTCGGCGTTCCACGCAAGGC---------------------------------------------------
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>SNPs
S-SS-SS-SSSSS-S-SSSS---SSSS-SSSSS-S--SS-SS-SSS-S-S-SSSSSS-SSSSS-SSSSSSSSSSSSS-SS
S-SS-SSSS-SSSSSSS-SSS-SSSSSSS-SSS--S-SS-SSSSSSS--SSSSS-SSSS-SS-SS-SS-SSS-SSSSSSS
-S-SSSSSSSSSSS-SSS-S-SS--S-SSSS-SSS-S-SSSS-SSSSSSSSSSS-SSS-SSSSSSS-SS--SSSSSS-S-
SSS-S-SS--S-SSSS-SSS-SSSSSSSSSSSSSS-SSS--S-S--SSSS-SSSSSSSSSSSSSSS-SS-SS-S-SSS--
SSSSS-S--S-SSS-SS----SSSSSS-SSSS--SSSSSSSSSSSSSS-SSSSS-SSSSSSS-SSSSSSSSSSS--SSSS
SSSS--SSS--SS-SSSSSS-S-SSS-S---SSSSSSS--SSSSSSSS-SSS---S--S-SSSSSSSS-S-SSSS-S-SS
SSSS-SS-SSSS-S-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----S--------SSS--------------S--S----------------------S-------S--------S------
------------------------------------------S----------------S--------------------
--------S-------S-----S---------------------------------------------------------
-S---------------------------------------------------SS-------------------------
------------------------------S------------------------------S------------------
---------S--------S-------SSSSSSSSSS-------------------------------------S--S---
---S--------S---SSSSS-----S---S----S-------S-S--------------S--SS-------S----S--
-------S----------------SSSSSSSS---S---------------S----------------------------
----------S--------------------------------S-------S-------S----------SS----S---
---------S---------S---S---------------------------------------------------S----
--------------------------S-----------------------------------------S-------S---
-----------S---------------------------------------------S-----------------S----
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----------------------------------------------S----S----------------------------
-----S------S------------S------------------------------------------------------
----------------------------------------------------S----------S----------------
------------S-------S-----S-----------S-----------------------------------------
----------------SS------------S-------S------------------S----------------------
-------------------------------------------------------S------------------------
-------------------------------------------S------S---S-------------------------
---------------------------S----------------------------S-----------------------
S-------S---------------S------S-------------------------------------------S----
---S----------------------------S-----------------------------------------------
------------------S-------------------------------------S-------------S-SSS-----
--------------------------------------------------------------------S-----------
---------------S--------S---S------S-------S----------------------S-------------
-S-----------SSSS---------------------------------------------------------------
-------------------------------------------------------------S------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_683
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-----------------------TTTGGAGTCACCCACGCTAC-------------------------------------
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>reverse_1937
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----------------TTGCGCTCTCCACCAATTGA--------------------------------------------
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>forward_1272
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----------------------------------------------------TCTGCATCGCTTGAGTTCGT--------
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>reverse_3051
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----------TGCCGTCCTGATGCATATCC--------------------------------------------------
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