>input_sequence_61360
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------------------------------------------------ATGGCCAACTCTTCTTCGTCCTCATCCAGTGG
CGGCAAGCAGCCGTCGCACTCCGCGTCGGCCATTGTCGGGCGAGCC---CCCGTCTCCGGCTCTCACGACC--------T
CAAGATAGATGGCCACTCCGCCATCAAGGGGATCGGCCACGGCAACTACATCACGTCTGAGCAGTTCGTCATCGGAGGCC
GTCGCTGGCGTCTCCAGTACTACCCCGACGGCTACTCCGGCTACCACGAATGGATAGCCATCTACCTCTGCCTCGACCCT
GCCGACC---TCAACGCAATAAGCGTGCAGGCCCAGATCAGTTTGCTGGACCAGGATGGGAACCCCGTGCCAGCCTACAC
CAAAGCCGGCAACTCATGGACCTTCTCCAGGCAAAGTGGACTTTGTGGCTTCTACCAGTTCATCAGGAAGAATGAACTGG
AGCAAT---CTGCTTACCTAAAGGATGATACCTTCACTTTCAGGTGTGCCATTACCATGGCAAAGGTAATCTTCACGGAA
CCCATCCCGGAGTC---CGTGTCAGTGCCTTTGTCATCGCCTGACATGCAGCGTCAATTTGGCCAGCTCCTCTCCACCGG
TGACGGGGCCGATGTCACGTTCGAGGTCGGGGGCGAGACGTTTCCGGCGCACAGGAGCGTGCTCGCGGCTCGCTCTTCAG
TCTTCAACGCGGAGCTCCTCGGTCCTATGAAGGAGAGGACGGACGCTAG--------CATTCGGCTGGACGGCATAGAAG
CTAAAGTTTTCAAGGCCATGCTCCACTTCGTCTACACCGACTCATTGCCGCATATAGACGCGGGAGAGGTGATGCCGATG
GCTCAGCATTTGCTCGTGGTGGCAGACAGGTATAATCTGGCGAAGCTGAAGTCGAAGTGTGAGGACACGCTGCGCGGACA
CTTCAACACCAGCACGGTGGCAACTATATTGGTGCTGGCCGAGCAGCATTGTTGTGGGGCGCTCAAGGATGCATGCTTCG
AGTTCGTCGCGCCTTTGGGCAAATTCAAAGCACTCACGGCTAGTGATGGCTTTGAGCATCTGATGGGGAGCTGCCCCCAT
CTTCTCAAGGAGCTGGTTGCCAATCTGGCCACCTAG--------------------------------------------
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>chr7A_1_TraesCS7A01G441700
ATCGATGCTCCAAAAAATGCCATTTTTAGAAGCATTTTGGAGTACAGAATTTTCTTTTGCCGCAACTTCCACGAATGGCA
TTCCAAAAAGATAATTTTCAAGCGCACAAAACATTTGCCAAAGTTTACCAACAAAATAATTCAGAATTGTTTGAATTTAT
TTCAACTTGTTAAGAATTTACTATTCATGGCGTGCTCATTTATGCTCGTGACCCGTTAGGGACTTTCCGTAGGAGAGCTC
CTATGTGGCGCCATTAGTGTCGGCTGTCCACCTAGCGTTAACGCGCTTGCTTGCTTGGGCCTGGCCCAACAAGGTAACGG
AATCTGGTTGCGCGGTCGTAGGTCTCCTTTGTTCACTTGATCAAGTATTGACTTTTTGAAACAAAAATGGACCTAACAAA
TTCATAAGAATAAACAAAACAGGAAATTTGAAAAAATATCCTGGATTTGGAAAAAGTTCATAAATTTCAAAACTATTATG
AATATGAAAATTTTCAAATTTTGAAAAGGCTCATGGATTTTGAAAGAAAAAAGTTTAAAAGGAAAAGCCTCATGGGCACA
ATAACAAGATGTATCTCATCAATACTTATTTTGTTGTTTCTGTATCTCATTTTTTAAAATTAATTAATTGTTTGTTGGAT
ATTTTTTTATGAAAATATGAAAAAGTA-AGAAAATAAAATTTATAAAATAAAAAGGAAAAGAGAAAAACGAGAGAACCCA
AACTGAGTGGAGAAATTAGG-AACCTATTACTGGGCCGGCTGACTTGGGACTTCCTACTGAC------ATGCGTGCATTG
GGCTGGGTGCCTGGGTCTCAGGTTAGCGTGCTTTTTTGGTTGATCAGCGGCCCTCAGGGCGTGCCCTATAAATCATTCCC
ATCCGGCCTGCTTGTCCTCTTTTTTCTTTCCCTACTTATAAACCTCTGATGATCCGATCTGGCATACCGCGTCGCAGCTA
GGGTTTCATTTCTCCATACCAATTCCCTCGTCGCAGCTAGGGTTTGTCATGGCCAACTCTTCTTCGTCCTCATCCAGTGG
CGGCAAGCAGCCGTCGCACTCCGCGTCGGCCATTGTCGGGCGAGCC---CCCGTCTCCGGCTCTCACGACC--------T
CAAGATAGATGGCCACTCCGCCATCAAGGGGATCGGCCACGGCAACTACATCACGTCTGAGCAGTTCGTCATCGGAGGCC
GTCGCTGGCGTCTCCAGTACTACCCCGACGGCTACTCCGGCTACCACGAATGGATAGCCATCTACCTCTGCCTCGACCCT
GCCGACC---TCAACGCAATAAGCGTGCAGGCCCAGATCAGTTTGCTGGACCAGGATGGGAACCCCGTGCCAGCCTACAC
CAAAGCCGGCAACTCATGGACCTTCTCCAGGCAAAGTGGACTTTGTGGCTTCTACCAGTTCATCAGGAAGAATGAACTGG
AGCAAT---CTGCTTACCTAAAGGATGATACCTTCACTTTCAGGTGTGCCATTACCATGGCAAAGGTAATCTTCACGGAA
CCCATCCCGGAGTC---CGTGTCAGTGCCTTTGTCATCGCCTGACATGCAGCGTCAATTTGGCCAGCTCCTCTCCACCGG
TGACGGGGCCGATGTCACGTTCGAGGTCGGGGGCGAGACGTTTCCGGCGCACAGGAGCGTGCTCGCGGCTCGCTCTTCAG
TCTTCAACGCGGAGCTCCTCGGTCCTATGAAGGAGAGGACGGACGCTAG--------CATTCGGCTGGACGGCATAGAAG
CTAAAGTTTTCAAGGCCATGCTCCACTTCGTCTACACCGACTCATTGCCGCATATAGACGCGGGAGAGGTGATGCCGATG
GCTCAGCATTTGCTCGTGGTGGCAGACAGGTATAATCTGGCGAAGCTGAAGTCGAAGTGTGAGGACACGCTGCGCGGACA
CTTCAACACCAGCACGGTGGCAACTATATTGGTGCTGGCCGAGCAGCATTGTTGTGGGGCGCTCAAGGATGCATGCTTCG
AGTTCGTCGCGCCTTTGGGCAAATTCAAAGCACTCACGGCTAGTGATGGCTTTGAGCATCTGATGGGGAGCTGCCCCCAT
CTTCTCAAGGAGCTGGTTGCCAATCTGGCCACCTAGCGTGTCGGTTTGGAAGTTGATTTAATCTATCGTTTGTCTTTTCC
ATTTCGTGATCAGGATAACGAGTACTTCGAATAAAAGTTTTTATTTTCTGAAAATACCGAGCTCTAATAGATTTCCCCAT
GGCAGTTCTAGCTGGTTAGCTGGAAGCATACTATTGACTGATCTGAAATTTGTTGCTAATCAAATCTTGGTGATTCTTAA
CTGATCAACATGTAATAGTTTTTGCGGGCCTGTTGTGACGGTTTTCGCCCGGTTTTTCGTTAATTAAACAGGGCAACTCT
CTTAGACCCTTTTTAATGAATCGGGCCCTAAAGGACTGCGTTTAAAAAACAACAACATATAGATGGTTAAAAAGGAAACA
AAATCAACA-TGTACAATCAGCCCGTGGAGGAAAAAAGCTCTTAATTCCATAGGTTTCACTTCCCTCTCCCTAGCAAGTG
ACAACGCCCGCCACTGCTTTCTTCCACCGCCATGTCCACACCGGAGAATCACTCTCTCACATGTCCATGGGAGGAAGGCT
GCACATCGACTTGGCTCAGGTACACGAA--------ATCCTCGTCTCCCTCTTAATTCTTTGAGCCCCTAAGAGCATCTC
CAATACTCCGTCCGTTTTTCTATTTTAGATCACTTCATTTTTCGTGTCAAACTTTGACTTATAATTTCAAAAATATATCG
TTGAAAAGTTTTATGAAATGTGCATCCAATTACATACTTTTTGTGGCATAAAACTCACATTTTTGTTGGTAAAATGAATG
GTCAAAACTAGACATAATAAAATGAAGTGACCTTTGTATATAAAACGAA--GGAGCAACATATGTGTACTTGGTGACCTA
AAAGAAGTTTTAGGCATAGGAGAGAGAAGATGGTAGGAATCTTTGTTTTCTGTACTCCCACGGCTAGCCTAAAATTCAGT
TACCTATAACTAAAACTCCTATCTCTCTTTGTATTGTGCTATCCTACTCCAAATA-------------------------
---------------------------------------------------ATTTGTACATTTCATCATATAAAATTATT
CAA
>chr7B_652
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-----------AAAATATGAAAATGTATACAAACGTAAAAAAATAACAGAAAAATGAAAAGTCAAAAACGAGAGAAACAA
AACTGAGTGGAGAAATTAATAAACCTATTACTGGGCCTGTCGGCCCATTCGGGGCGTGCCGTCCGTAGATGCGTGCATTG
GGCTGGC--------TCTCAGGTTAGGG-------TTGGTTGATCA---GCCCTCAGGGCGTGCTCAATCAATCATTCCC
ATCCGGCCGGCTTTTGCTCTTATTTCTTTCCCTACTTA--AACCTCCGATGATCCAATCTGCCAAGACGGAGCGATCGAT
C----TCATCTCTCCGTACCATCTCCCACGTCGCAGCTAGGGTTTGCCATGGCCAACTCTTCTTCGTCCTCATCCAGCGG
CGGCAAGCAGCCGTCGCATACCGCGTCGGCCATTGTCGCGCGGGCTGGGCCCGTCTCCGCCTCTCATGACC--------T
CAAGATAGATGGCTACTCCGTGATCAAGGGGCTCGGTCACGGCATTTCCATGACGTCTGAGAAGTTCGTCATCGGAGGCC
GTGTCTGGCGTCTACAGTACTACCCCAACGGCTACTCCGGCTACCCCGACTGGATAGCTATCTACCTCTGCCTCGACCCC
GCCGACGTCATCAACACAATAAGCGTGCAGGTCCAGATCAGTTTGCTGGACCAGGATGGGAACCCCGTGCCAGCCTACAC
CAAAGCCAGCAACTCATGGACCTTCTCCAGGCAAAGTGGACATTGTGGTTTCCACCAGTTCATCAGGAAGAATGAACTGG
ACCAAT---CTGCTTACCTAAAGGATGATACCTTCACTTTCAGGTGTGTCATTACCATGGCAATGGACATCTACACGGAG
CCCGTCCCGAAGTCCGTCGTGCCAGCGCCTTCGCTCTCGTCTGACATGCACCAACGCTTTGGCCAGCTCCTCTCCACTGG
TGACGGGGCCGATGTCACGTTCGAGGTCGGGGACGAGACGTTTCCCGCACACAGGTGCGTGCTGGCGGCTAGCTCTTCAG
TCTTCAAGGCGGAGCTCCTCGGTCCTATGAAGGAGAGGACGGACGCTAG--------CGTTCGGCTGGACGGCATAGAAG
CTAAAGTTTTCAAGGCCATGCTCCACTTCGTCTACACCGACTCATTGCCGCATATACACGCGGGAGAGGCGATGCCGATG
GCTCAGCATTTGCTCGTGGTGGCAGACAGGTATAATCTGGCGAAGCTGAAGTCGAAGTGTGAGGACACTTG---------
----GACACCAGCACGGTGGCAACTATATTGGTGCTGGCCGAGCAGCATTGTTGTGGGGCGCTCAAGGATGCATGCTTCG
AGTTCGTCGCGCCTTTGGGCAAATTCAAAGCACTCACGGCTAGTGATG--------------------------------
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>chr7A_993
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----------------------------------------GGTTTGTCATGGCCAACTCTTCTTCGTCGTCATCCAGCGG
CGGCAAGCAGCCAACACGGAGCGCGTCGGCCATTGTCGCGCGGGCAGTGCCGGTCTCCGGCTCGCACGATC--------T
CAAGATAGACGGCTACTCCGGGGCCAAGGGGCTCGGCAACGGTTCCTGCATTACGTCCGAGTTGTTCTCTATCGGAGGCC
GTCTCTGGCGTCTCCAGTACTACCCCGACGGCTACTCCGGCTACCCTGACTGGATATCAATCTACCTCTGCCTCGACCCC
GCCGACG---TCAACACAATCAACGTGCAGTTCGAGATCAGTTTGCTCGACCAGGATGGGAACCCCGTGTCAGCGTACAG
CAAAGCCAGCAACACGTGCACCTTCTCCAAACAAAGTGGATCGTATGGTTTCTGGCAGTTCATCAAGAAAAAAGAACTGG
AGGAATCAGCTGATTGCCTGAAGGATGACGTCTTCACTGTCAGGTGTGTCATTACCATGGCAAAGGAGATCTTCACGGAA
ACCATCCCGGCCCCCGTCGTCG---------TGCCACCGCCTGACGTGCTCCAGCATCTCGGCCAGCTCCTCTCCTCCGG
GGACGGGGCGGATGTCACGTTCGAGGTTGGGGACGAGAAGTTCCCCGCCCACAGGTGCATGCTCGCAGCTCGGTCCTCGG
TCTTCAAGGCCGAGCTCCTCGGTACGATGAAGGAGAAGACGGACGCCAG--------CGTCCGGTTGGACGGCATCGAAG
CTAAAGTGTTCAAGGCAATGCTGCACTTTGTTTACACCGACTCGTTGCCGCATATAGACGCGGGAGACGCGGCGGTGATG
GCTCAGCATTTGCTTGTGGTGGCGGACAGATTCAACCTGGGGAGGCTGAAGTTGATGTGTGAGGACACGCTGCGCAGCTA
CATCGACACGAGCACGGTGGCGACCATATGGGCGCTGGCCGAGCAGCATGGCTGTGGGGCGCTCAAGGACGCATGCTTCA
AGTTCCTTGCGTCTCTCGGCAATTTCAAAGCACTCACGGCCAGCGATGGCTTTGAGCATCTGATGAGGAGCTGCCCCTCT
CTCCTTAAGGAGCTGGCTGCCAATCTGGCTACCTAGGTGTCGGGTTTGGAAG----------------------------
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>chr7B_1054
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---------------------CGCGTCGGCCATTGCCGCGCGGGCAGTGCCCGTCTCCTGCTCGCACGATCTCAAGAAAT
CAAGATAGACGGCTACTCCGGAGCCAAGGGGCTCGGCAAAGGTTCCTGCATTGCGTCCGAGTTGTTCTCCATCGGAGGCC
GTCTCTGGCGTCTCCAGTACTACCCCGACGGCTACTCCGGCTACCCTGACTGGATAGCAATCTACCTCTGCCTCGACCCC
GCCGACG---TCAACACAATTAACATGCAGTTCGACATCAGTTTGCTCGACCAGGATGGGAACCCCGTGTCAGCGTACAG
CAAAACCAGCAACACATGCACCTTCTCCAAACAAAGTGGAACCTATGGTTTCTGGCAGTTCATCCAGAAAAAAGAACTGG
AGGACTCAGCTGATTGCCTGAAGGATGACGTCTTCACTGTCAGGT--GTCATTACCATGGCAAAGGAGATCTTCACGGAA
ACCATCCCGGCCTCCGTCGTCG---------TGCCACCGCCTGACGTGCTCCAGCATCTCGGCCGGCTCCTCTCCAGCGG
CAACGGGGCGGATGTCACGTTCGAGGTTGGGGACGAGAAGTTCCCCGCACACAGGTGCATGCTCGCAGCTCGGTCCTCAG
TCTTCAAG-----------------GATGAAGGAGAAGACGGACGCCAGGTCGCCAGCGTCCGGCTGGACGGCATCGAAG
CTAAAGTGTTCAAGGCCATGCTGCACTTTGTTTACACCGACTCGTTGCCGCATATAGACGCGGGAGACGCGGCGGTGATG
GCTCAGCATTTGCTTGTGGTGGCGGACAGATTCAACCTGGGGCGGCTGAAGTTGATGTGTGAGGACACGCTGCGCAGCTA
CATCGACACCAGCACGGCGGCGACCATATTGGCGCTGGCCGAGCAGCATGGCTGTGGGGCGCTCAAGGACGCATGCTTCA
AGTTCCTTGCGTCTCTCGGCAATTTCAAAGCACTCACGGCCAGCGATGGCTTTGAGCATCTGATGAGGAGCTGCCCCTCT
CTCCTCAAGGAGCTGGCTGCCAATCTGGCTACCTAGGTGTCGGGTTTGGAAG----------------------------
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>chr7B_2004
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---------------------------------------CTAGTGATGGCTTTGAGCATCTGATGAGGAGCTGCCCCCAT
CTTCTCAAGGAGCTGGTTGCCAATCTGGCCACCTAGAGTGTCGGTTTGGAAGTTGATTTAATCTATCGTTTGTCTTTTCC
ATTCCGTGATCAGGATAACGAGTACTTCGAATAAAAGTTTTTATTTTCTGAAAATACCGAGCTCTAATAGTTTTCCCCAT
GGAAGTGCTAGCTGATTAGGTGGAAGCATATTATTGACTGATCTGAAATTTGTTGCTAATCAAATCTTGATGATTCTTAG
CTGATCTACATG--------------------------------------------------------------------
-----------------------------------------------------------TAGATAGTTAAAAAGGAAACA
AAATGAACAATGCACAATCCGCCCGTGGAGGAAAAAAAAGG-----TCCATAGGTTTCACTTCCCTCTCCCTAGCGAGTG
ACAACGCCCACCACTGCCATCTGCCACCGCCATGTCCACACCGGAGAATCGCTTTCTCACATGTCCGTGGGAGGAAGGCT
GCACATCGACTTGGCTCAGGTACACGA---AGGTGGATCCTCGTCTCCCTCTTAATTCTTTGAGCCCCTAAGAGAATCTC
CAATACTCCCTCCGTTTTTCTATAGAAGACCACTTCATTTTTCATGTCAAACTTTGACTTATAATTTTAAAAATATATCA
TTGAAAAGTTTTATGAAATGTGCATCCAATTACATACTTTTTGTGGCATAAAACTCACATTTTTGTTGGTAAAATGAATG
GTCAAAACTAGACATAATAAAATGAAGTGACC-TTGTATATAAAACGAA--GGAGCAACATATGTATACTTGGTGACCTA
AAAGAAGTTTTAGGCATAAGAGAGAGAAGATGGTAGGAATCTTTGTTTTCTCTACTCCCAGGGCTAGCCTAAAATTCAGT
TACCTATAACTAAAAATCCTATCTCTCTTTGTATTGTGCTATCCTACTCCAAATTTTTCTAGTATTTTTTGTGAATTTTT
TATGTTCAATTGTCTACCATGTTCGGATGAGTCTGGGCACCAAATCGCTGCACTCGTACATTTCATCATATAAAATTATT
CAA
>chr7D_2580
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--------------------------------------------------------TCACATGTCCATGGGAGGAAGGCT
GCACCTCGACTTGGCTCAGGTACACGAAGGAGGTGGATCCTCGTCTCCCTCT-AATTCTTTGAGCC-----GAGCATCTC
CAATACTCCGTCCGTTTTTCTATAGAAGACCACTTCATTTTTCTTGCCAAACTTTGACTTATAATTTGAAAAATATATCA
TTGAAAAGTTTTATGAAATGTGCCTCCTATTACATACTTTTTGTGGCATAAAACTCACATTTTTGTTGGTAAAATGAACG
GTCAAAATTAGACATAATAAAATGAAGTGACC-TTGTATATAAAGACGAAGGGAGCAACATATGTATACCTGGTGACCTA
AAAGAAGTTTTGGGAA-AGGAGAGAGAAGATGGTAGGAATATTTGTTTTCTCTACTCCGACAGTTAGCCTAAAATTCGGT
TACCTATAACTAAAACTCCTATCTCTCTTTGTATTGTGCTATCCTGCTCCAAATA-------------------------
---------------------------------------------------ACTTGTACATTTCATCATATAAAATTATT
CAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS------------S-----S---SSS---SSS----S-S-----S------SS-------------S-S-
------------------SS-----------------S-SS-S-SSSSSSSSSS-SSSSSSS------------------
------SSSSSSSSS-----------S-SSSSSSS-----------SSS---------------S-S--S----------
--------S----S-S-----S----------------SS------S--------S-----S--SSS--SSS--SSSSSS
SSSSS----S-----S-----SS----S-------------------------------------------------S--
------------------SS------------------S---S--S----------------------------------
-------------S------SS---------S------------S--S---S---------S------------------
---S-----------------------------------------S---S--------S--------------------S
------S--------S---------------S------------------------------------------------
-------S---------------------------------S------S-------------------------------
------------------------------------------------S-----------------SS------------
---------------------S---S-------S----------------S-SS--S-----------------------
--------------------------------S------------S--S------S------------------------
-------S--------------------------------------------------S---------------------
---------------------------------------------------------------------S----------
---------------------------------------------------------------------------S-SS-
-S--S---------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------------------S-------------------------------------------
---S------------------------------------------------------------------S---------
--S---S-------S----S----------S--------------------------------------S---------S
------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------------
----S-------S------S-----------------SSSSSSSSS-----------------------------S----
---------S-------SS---S---------------------------S--S--------------------------
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-----------------------SSS---S-------------S-----------------------S-----------S
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--------------------------------S--------------------------------S--------------
---------------------------------------------------S----------------------------
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----------------------------------------------------S---------------------------
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>forward_833
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-------------GGTCTCAGGTTAGCGTGCTT-----------------------------------------------
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>reverse_2347
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--------------------------GGCCTGTTGTGACGGTTTTC----------------------------------
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