>input_sequence_61322
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------------------------------------------------ATGTCGTGCTCCCACCTCTCCACCGCGTGGTC
CTCCTCCGCGCTTGCCAGCACCTCCACCCGCCGCCGCGCCTCCACCGGCAGCAGCAGCAGCCTGGTGGTGCGGTGCTCCC
TCCGGGACCTCCGCAACCGCATCGACTCTGTCCGTAACACGCAGAAGATCACGGAGGCGATGAAGCTGGTGGCCGCCGCC
AAGGTCCGTCGCGCGCAGGAGGCCGTGGTCTCCTCCCGCCCCTTCTCGGAGGCTCTGGTGGAGGTGCTCTACAACATGAA
CCAGGAGATCCAGTCGGAGGACATCGACCTGCCCCTCACCCGCCAGCGCGCCGTCAAGCGCGTCGCGATCGTCGTCCTCA
CCGGCGAGCGTGGCCTCTGCGGCGCCTTCAACAACAACGTGCTCAAGAAGGCCGAGGCCCGCATGGAGGACCTCAGGCAG
CTGGGCGTCGACTACACCGTCATCAGCGTCGGCAAGAAGGGCAACGCCTACTTCCAGCGCCGCGACTACATCCCCACCGA
GCGCTTCCTCGAGCTCGCCGGGATCCCCACCGTCAAGGACTCGCAGGCCATTTGCGACCTCATCTACTCCCTCTTTGTCG
CCGAGGAGGTCGACAAGGTGGAGCTCGTCTACTCCAAGTTCGTCAACCTCGTCCGCTCCGACCCCATCATCCAGACGCTG
CTGCCCATGTCCCCTAAGGGCGAGATCTGCGATGTCAACGGCATCTGTGTCGACGCCACCGAGGACGAGCTCTTCAAGCT
CACCACCAAGGAAGGCAAGCTCACCGTGGAGCGCGAGAAGATCAAGATCGAGATGCAGCCCTTCTCCCCCGTCGTCCAGT
TCGAGCAGGACCCCGTCCAGATCCTCGACGCTCTCCTCCCGCTCTACCTCAACAGCCAGATCCTGCGTGCCCTCCAGGAG
TCGCTCGCTAGCGAGCTCGCCGCCAGGATGAGCGCCATGAGCAGCGCCACAGACAATGCCATCGACCTCCGGAAAAATCT
CTCCATGGTCTACAACCGCCGACGCCAGGCCAAGATCACCGGAGAGATCCTTGAGATCGTCGCTGGCGCCGACGCCCTGT
CCGGCTGA------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G229600
CAGCGGAACTCAGGCAAATGGCCATCTCGACGAGGATCCAGTCAGCAGTGATAATTCCAGCCAAGCTATTTCCAAAAATG
CTGACAAGAAGATATCACTGCTAGGACACGGGCACCACGGTAAACAAGTGGTCGAGCTTTTGCTGGCCAACGGTGGGGAG
GAGGCCGTTCACCAGTTTTGCCAAAGATGGAGGCATGTTTTCGTCGAAGCTGTCCACCCTCGTTATCTACCTTCTGGTTG
GAATATAAAGCACAGGTAAAAAAATATCACCTTTTGCTGCTTGATTGGTTAATTGCTTAACACATAAAATTTCTTGTGCT
TGTGAATCGTGATGCTCTTT--TTCGAATCTATTTCTCATTTGAAATCAAGATATTTATTTACAGAGCATCTTCTGTGCA
GTGGAAGAAGGGATTTCGGCGACTTCAGTGTGTACAAACCATCCAACCAAGAGCCTCAGCCTGCTGACTGATTAGGAGGA
TCAGTACTTTCTTTTTATATAAAGTTGTTTGCATTTTATCAAGCCTACATATGCTTGTATCACCGGATTCTTTCGGTATG
TGGCATCTGGCCTTTTTCTAACTCTGGAATTTTACAAGATTTTTGTATGAAAAAGAATATCGAATTTTGATTCACTTGGG
CTAAGTATCTAATATGTACTGTAGTATATCCGCAGTGTATCCATTCCTGTCCTCTCCCAAAGAGAAGTTCCCTTTTTTGT
TGCTGTAGTTTTAAGAGTTTTATTTATTTGGCAAGGCAAAAAAATAGTATGAATTGAGAAATGGAAGCAGGCAAGGGGCA
GAGGGTAGGCGGCCAGGGCGCGCCACATGATCCGCGGCAATCTCGCAGTGACTAGCCCTCCACCACTCAGCCCGGCTTGA
AAACCCCACCTGCTCACTTCTCCACCCAAACCCAATCCAAAATCTTTCCCTCCCTCCCATCCTTTCTTCCCCTCCGCCTC
CGCCTCCT------CGGCCGCCGGTGACGCGCCAGGCGCTAGCCAGCCATGTCGTGCTCCCACCTCTCCACCGCGTGGTC
CTCCTCCGCGCTTGCCAGCACCTCCACCCGCCGCCGCGCCTCCACCGGCAGCAGCAGCAGCCTGGTGGTGCGGTGCTCCC
TCCGGGACCTCCGCAACCGCATCGACTCTGTCCGTAACACGCAGAAGATCACGGAGGCGATGAAGCTGGTGGCCGCCGCC
AAGGTCCGTCGCGCGCAGGAGGCCGTGGTCTCCTCCCGCCCCTTCTCGGAGGCTCTGGTGGAGGTGCTCTACAACATGAA
CCAGGAGATCCAGTCGGAGGACATCGACCTGCCCCTCACCCGCCAGCGCGCCGTCAAGCGCGTCGCGATCGTCGTCCTCA
CCGGCGAGCGTGGCCTCTGCGGCGCCTTCAACAACAACGTGCTCAAGAAGGCCGAGGCCCGCATGGAGGACCTCAGGCAG
CTGGGCGTCGACTACACCGTCATCAGCGTCGGCAAGAAGGGCAACGCCTACTTCCAGCGCCGCGACTACATCCCCACCGA
GCGCTTCCTCGAGCTCGCCGGGATCCCCACCGTCAAGGACTCGCAGGCCATTTGCGACCTCATCTACTCCCTCTTTGTCG
CCGAGGAGGTCGACAAGGTGGAGCTCGTCTACTCCAAGTTCGTCAACCTCGTCCGCTCCGACCCCATCATCCAGACGCTG
CTGCCCATGTCCCCTAAGGGCGAGATCTGCGATGTCAACGGCATCTGTGTCGACGCCACCGAGGACGAGCTCTTCAAGCT
CACCACCAAGGAAGGCAAGCTCACCGTGGAGCGCGAGAAGATCAAGATCGAGATGCAGCCCTTCTCCCCCGTCGTCCAGT
TCGAGCAGGACCCCGTCCAGATCCTCGACGCTCTCCTCCCGCTCTACCTCAACAGCCAGATCCTGCGTGCCCTCCAGGAG
TCGCTCGCTAGCGAGCTCGCCGCCAGGATGAGCGCCATGAGCAGCGCCACAGACAATGCCATCGACCTCCGGAAAAATCT
CTCCATGGTCTACAACCGCCGACGCCAGGCCAAGATCACCGGAGAGATCCTTGAGATCGTCGCTGGCGCCGACGCCCTGT
CCGGCTGATTCCTCCTCGCCACCTGAGCTGAGCCGCCGCTGTTATATATAACTCTTTGCCTCTTTTTCTCCACTCTTCTA
CTTATTATCTTGCTTGGTCTGTGCCTGTCTGTAATAATTTCTCATATAGCACAAAAAAGGATGTCTGTTCTAAGATTCAG
TTCGGAGATGCCAAATATATAATCCAGAGTAATTTATCTATGCAGTCCCGCCTCCACCCATATGCAATTTGTTTATGCAA
TCCAGAGTAATCCCATATGCAGTTTCTTGGTAGAAACCCTAGTGAAATGGTCCTCACTTAGTAGTCATTCAACAAATCAA
CACTTATAAAAGACACCCAAAGGGCATCTCATAACTGCTATCAAGGAAAACAGTATAATCAAAGAACAACAAAGGCACAA
ACCGACATGTAAAAACTAGAATTATATAAAAAATCATATTGGCCATCTTGTTCATTCGCTTGCTTGTCGTCCGCCGGGCT
TACATATATTGAATAGGCAGTGTAGACACTCGCTGTGAACAACGAGATTTAGTAGTCGTTGTGTCGTGGGAAAACACGGC
CACCTATGGGGCCATCAGCCCCTTGTGGTTCGGCAGGGGGAAGAGCACATTGCACAAAGAGCGGAGAGCGCAGAGCAGCA
TGTCAGCGATCACACGGGCAGTTTTACCCAGGTTCGGGCTGCCGCGAGGTATAAAACCCTACTCCTGCTTTGGTGGATTG
ATGAGAGGACCGTAGTGGAGACGTGGTGCTCTAGCCCGGCAAGGTTGCCTCGGGGTGGGAACAGCTACGCGCCTATGAGT
GTATAAGGGTCCGAATCCTTCCTAAGGTTGCCACGACCCTCCTTTTATAGATCAAGGGGTCACCACAATGGCAAATCAGT
CATTGTGTACTGACTAGATAACGAACAGTGCTATCATACCTAACTCTGCAGACAGGACAAGGCGCATTAAATGCGTCGCT
TAGTGTCACATCGTAACGCAGCCCGACAAGCCTTGCCGGGTCGTTCGG
>chr2B_1
CAGCGGAACTCAGGCAAATGGCCATCTCGACGAGGATCCAGTCAGCAGTGATAATTCCAGCCAAGCTATTTCCAAAAATG
CTGACAAGAAGATATCACTGCTAGGACACGGGCACCACGGTAAACAAGTGGTCGAGCTTTTGCTGGCCAACGGTGGGGAG
GAGGCCGTTCACCAGTTTTGCCAAAGATGGAGGCATGTTTTCGTCGAAGCTGTCCACCCTCGTTATCTACCTTCTGGTTG
GAATATAAAGCACAGGTAAAAAAG-ATCACCTTTTGCTGCTTGATTGGTTAATTGTTTAACACATAAAATTTCTTGTGCT
TGCGAATCGTGATGCTCTTTACTTCGAATCTATTTATCATTTGAAATCAAGATATTTATTTACAGAGCATCTTCTGTGCA
GTGGAAGAAGGGATTTTGGCGACTTCAGTGTGTACAAACCATCCAACCAAGAGCCTCAGCCTGTTGACTGATTAGGAGGA
TTAGTACTTTCTTTTTATATAAAGTTGTTTGCATTTTATCAAGCCTATATATGCTTGTATCACCGGATTCTTTCGGTATG
TGGCATCTGGCCTTTTTCCAACTCTGGAATTTTACAAGATTTTTGTATGAAAAAGAATATCGAATTTTGATTCACTTGGG
CTAAGTATCTAATATGTACTGTAGTATATCTGCAGTGTATCCATTCCTGTCCTCTCCCAAAGAGAAGTTCCCTTTTTTGT
TGCTGTAGTTTTAAGAGTTTTATTTATTTGGCAAGGCAAAAAAAGAA-ATGAATTGAGAAATGGAAGCAGGCAAGGGGCA
GAGAGTAGGCGGCCAGGGCGCGCCACATGATCCGCGGCAATCTCGCAGTGACTAGCCCTCCACCACTCAGCCCGGCTTGA
AAACCCCACCTGCTCACTTCTCCACCCAAACCCAATCCAAAATCTTTCCCTCCCTCCCATCCTTTCTTCCCCTCCGCCTC
CGCCTCCGCCTCTGCGGCCGCCGGTGACGCGCCAGGCGCTAGCTAGCCATGTCGTGCTCCCACCTCTCCACCGCGTGGTC
CTCCTCCGCGCTTGCCAGCACCTCCACACGCCGCCGCGCCTCCACCGGCAGCAG---CAGCCTGGTGGTGCGGTGCTCCC
TCCGGGACCTCCGCAACCGCATCGACTCTGTCCGCAACACGCAGAAGATCACGGAGGCGATGAAGCTGGTGGCCGCTGCC
AAGGTCCGTCGCGCGCAGGAGGCCGTGGTCTCCTCTCGCCCCTTCTCGGAGGCTCTGGTGGAGGTGCTCTACAACATGAA
CCAGGAGATCCAGTCGGAGGACATCGACCTGCCCCTCACCCGCCAGCGCGCCGTCAAGCGCGTCGCGATCGTCGTCCTCA
CCGGCGAGCGTGGTCTCTGCGGCGCCTTCAACAACAACGTGCTCAAGAAGGCCGAGGCTCGCATGGAGGACCTCAGGCAG
CTGGGCGTCGACTACACCGTCATCAGCGTCGGCAAGAAGGGCAACGCCTACTTCCAGCGCCGCGACTACATCCCCACCGA
GCGCTTCCTCGAGCTCGCCGGGATCCCCACCGTCAAGGACTCGCAGGCCATTTGCGACCTCATCTACTCCCTCTTTGTCG
CCGAGGAGGTCGACAAGGTGGAGCTCGTCTACTCCAAGTTCGTCAACCTCGTCCGCTCCGACCCCATCATCCAGACGCTG
CTGCCCATGTCCCCTAAGGGCGAGATCTGCGATGTCAACGGCATCTGTGTCGACGCCACCGAGGACGAGCTCTTCAAGCT
CACCACCAAGGAAGGCAAGCTCACCGTGGAGCGCGAGAAGATCAAGATCGAGATGCAGCCCTTCTCCCCCGTCGTCCAGT
TCGAGCAGGACCCCGTCCAGATCCTCGACGCTCTCCTCCCGCTCTACCTCAACAGCCAGATCCTGCGTGCCCTCCAGGAG
TCGCTCGCTAGCGAGCTCGCCGCCAGGATGAGCGCCATGAGCAGCGCCACAGACAATGCCATCGACCTCCGGAAAAATCT
CTCCATGGTCTACAACCGCCGACGCCAGGCTAAGATCACCGGAGAGATCCTTGAGATCGTCGCTGGCGCCGACGCCCTGT
CCGGCTGATTCCTCCTCGCCACCTGAGCTGAGCCGCCGCTGTTATATATAACTCTTTGCCTCCTTTTCTCCTCTCTTCTA
C---TTATCTTGCTTGGTCTGTGTCTGTCTGTAATAATTTCTCA--TAGCACAAAAAAAGATGTCTGTTCTAAGATTCAG
TTCGGAGATGCCAAATGTATAATCCAGAGTAATTTATCTATGCAGTCCCGCCTCCACCCATATGCAATTTGTTTATGCAA
TCCAGAGTAATCCCATATGCAGTTTCTTGGTAGAAACTCTAGTGAGATGGTCCCCACTTAGTAGTCATTCAACAAATCAA
CACTTATAAAAGAAACCCAAAGGGCATCTCATAACTGCTATCAAGGAAAACAGTATAATCAAAGAACAACAAAGGCACAA
ACCGACATGTAAAAACTAGAATTATATCAAAAATCATATTGGCCATCTTGTTCATTCGCTTGCTTGTGAGTCCG------
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>chr2A_1
CAGCGGAACTCAGGCAAATGGCCATCTCGACGAGGATCCAGTCAGCAGTGATAATTCCAGCCAAGCTATTTCCAAAAATG
CTGACAAGAAGATATCACTGCTAGGACACGGGCACCACGGTAAACAAGTGGTCGAGCTTTTGCTGGCCAATGGTGGGGAG
GAGGCCGTTCACCAGTTTTGCCAAAGATGGAGGCATGTTTTCGTCGAAGCTGTCCACCCTCGTTATCTACCTTCTGGTTG
GAATATAAAGCACAGGTAAAAAAG-ATCACCTTTTGCTGCTTGATTGGTTAATTGCTTAACACATAAAATTTCTTGTGCT
TGCGAATCGTGATGCTCTTTACTTTGAATCTATTTATCATTTGAAATCAAGATATTTATTTACAGAGCATCTTCTGTGCA
GTGGAAGAAGGGATTTCGGCGACTTCAGTGTGTACAAACCATCCAACCAAGAGCCTCAGCCTGCTGACTGATTAGGAGGA
TCAGTACTTTCTTTTTATATAAAGTTGTTTGCATTTTATCAAGCTTATATATGCTTGTATCACCAGATTCTTTTGGTATG
TGGCATCTGGCCTTTTTCCAACTCTGGAATTTTACAAGATTTTTGTATGAAAATGAATATCGAATTTTGATTCACTTGGA
CTAAATATCTAATATGTACTGTAGTATATCCGCAGTGTATCCATTCCTGCCCTCTCCCAAAGAGCAGTTCCCTTTTTTGT
TGCTGTAGTTTTAAGAGTTATATTTATTTGGCAAGGCAAAAAAAT---ATGGATTGAGAAATGGAAGCAGGCAAGGGGCA
GAGGGTAGGCGGCCAGGGCGCGCCACATGATCCGCGGCAATCTCGCAGTGACTAGCCCTCCACCACTCAGCCCGGCTTGA
AAACCCCACCTGCTCACTTCTCCACCCAAACCCAATCCAAAATCTTTCCCTCCCTCCCATCCTTTCTTCCCCTCCGCCTC
CGCC------TCTGCGGCCGCCAGTGACGCGCCAGGCGCTAGCTAGCCATGTCGTGCTCCCACCTCTCCACCGCGTGGTC
CTCCTCCGCGCTTGCCAGCACCTCCACCCGCCGCCGCGCCTCCACCGGCAGCAG---CAGCCTGGTGGTGCGGTGCTCCC
TCCGGGACCTCCGTAACCGCATCGACTCTGTCCGCAACACGCAGAAGATCACGGAGGCGATGAAGCTGGTGGCCGCCGCC
AAGGTCCGTCGCGCGCAGGAGGCCGTGGTCTCCTCTCGCCCCTTCTCGGAGGCTCTGGTGGAGGTGCTCTACAACATGAA
CCAGGAGATCCAGTCGGAGGACATCGACCTGCCCCTCACCCGCCAGCGCGCCGTCAAGCGCGTCGCGATCGTCGTCCTCA
CCGGCGAGCGTGGTCTCTGCGGCGCCTTCAACAACAACGTGCTCAAGAAGGCCGAGGCCCGCATGGAGGACCTCAGGCAG
CTGGGCGTCGACTACACCGTCATCAGCGTCGGCAAGAAGGGCAACGCCTACTTCCAGCGCCGCGACTACATCCCCACCGA
GCGCTTCCTCGAGCTCGCCGGGATCCCCACCGTCAAGGACTCGCAGGCCATTTGCGACCTCATCTATTCCCTCTTTGTCG
CCGAGGAGGTCGACAAGGTGGAGCTCGTCTACTCCAAGTTCGTCAACCTCGTCCGCTCCGACCCCATCATCCAGACGCTG
CTGCCCATGTCCCCTAAGGGCGAGATCTGCGATGTCAACGGCATCTGTGTCGACGCCACCGAGGACGAGCTCTTCAAGCT
CACCACCAAGGAAGGCAAGCTCACCGTGGAGCGCGAGAAGATCAAGATCGAGATGCAGCCCTTCTCCCCCGTCGTCCAGT
TCGAGCAGGACCCCGTCCAGATCCTCGACGCTCTCCTCCCGCTCTACCTCAACAGCCAGATCCTGCGTGCCCTCCAGGAG
TCGCTCGCTAGCGAGCTCGCCGCCAGGATGAGCGCCATGAGCAGCGCCACAGACAATGCCATCGACCTCCGGAAAAATCT
CTCCATGGTCTACAACCGCCGACGCCAGGCCAAGATCACCGGAGAGATCCTTGAGATCGTCGCTGGCGCCGACGCCCTGT
CCGGCTGATTCCTCCTCCCCACTTGAGCTGAGCCGCCGCTGTTATATATAACTCTTTGCCTCCTTTTCTCCTCTCTTCTA
C---TTATCTTGCTTGGTCTGTGTCTGTCTGTAATAATTTCTCA--TAGCACAAAAAAGGATGTCTGTTCTAAGATTCAG
TTCGGAGATGCCAAATGTATAATCCAGAGTAATTTATCTATGCAATCCCGCCTCCACCCATATGCAATTTGTTTATGCAA
CCCAGAGTAATCCCATATGCAGTTTCTTGGTAGAAACCCTAGTGAGATGGTCCTCACTTAGTAGTCATTCAACAAATCAA
TACTTATAAAAGACACCCAAAGGGCATCTCATAACTGCTATCAAGGAAAACAGTATAATCAAAGAACAACAAAGTTACAA
ACCGACATGTAAAAACTAGAATTATATCAAAAATCATATTGGCCATCTTGTTCATTCGCTTGCTTGTCAGTCCG------
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>SNPs
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-----------------------SS-------------------------------------------------------
--S--------------------------------S--------------------------------------------
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-----------------------------------------------S--------------------------------
------------------S-------------------------------------------------------------
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----------------------------------------------SS--------------------------------
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-------S-----------------------------------S------------------------------------
------------------------------------------------------SSS-----------------------
----------------------------------S---------------------------------------------
-----------------------------------S--------------------------------------------
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-------------S------------------------------------------------------------------
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--------------------------------------------------------------S--------S--------
-SSS-------------------S--------------------SS----------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------S----------------------------------
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---------------------------S----------------------------------------SSS-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_528
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----------------------AGTTGTTTGCATTTTATCAAGCCTAC--------------------------------
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>reverse_2164
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---ATTATCTTGCTTGGTCTGTGCC-------------------------------------------------------
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