>input_sequence_61305
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGGCGGCCCTCATCAA
GCTCGGAAGCCTTCTTAGGCAGAGTGCTGTGGCTAGCAGTGCCTCCACCGGCTCGGCTCCTGCCCTGTTCAACGCTGCCC
GCTTCATGTGCGCCGGCCAGCCTGCTGATGGCTCCAAGCTTTTCGTCGGTGGTGAGTTTTCTTGCCTTACTTTTCTTGTA
CTGTATGTCCATTACCTTGTCTAGACCATCAGGTT---------------------------------------------
--------------------------TCAGTTTTATTTATCAGGTCTCGCCTGGGCTACTGATGATCATTCGCTGAAGGA
GGCGTTTCAATGCTTTGGTGAGGTCGTTGAAGGTCAGTGTATATCTTTCAAGCCTTATCAAATTTGCCAAAAGTCATTTT
ATCTGTTATGTACACACGGTGTCG--------------------------------------------------------
-----------------------------------GCTGTTTGTTCCGGTATGTGGTAGTT--------------ATTGT
TTGAAGATCTGAATGCTTAGCTATACATGGAAATTTGCTTGACTGTGCTT-TTATTCTGATGCTCTTTAGCTTACCTTGT
ACGGTGTATTAATTATTACGGCTTCATAATCCTTGTCTTTCATGTTACAGCTCGTGTTATCACTGACAGAGAGACTGGAA
GGTCTAGAGGGTTTGGTTTTGTGAGCTTCGCCAGCGGCGAGGATGCAAAGAGTGCTGCAGAAAACATGGACGGCAAGGTG
AGTCAAACC-AGAGTACCAGACATGTGTGCTGTTGTACTTTAATATGGAGTTAAACTTCTGCCATTTAGATGCTTATCAG
GGTTTGATAATTTTCACCATGTACTAAT-------------------------ACACCTTGTTAATTATTATTTCAAAGT
TTTGTGCCTGCCTTTAGCCAAATTGCCTAGGCCTGATACTGATGCCATGCTTCACTGGCCACTACTTTTAAGGATCTAAT
GTCCATCCAATGC-TTTGCAGGAGCTTGCGGGGAGGAACGTCCGTGTGAACTTCGCCAACGAGCGACCTTCGGGTGGTGG
CGGCGGCGGCGGCTTCTCTCGTGGCGGCGGTGGCTATGGAGGTGGTGGCGGCGGCTATGGTGGCGGTGGCTTTGGTGGTG
GCGGCGGATACGGTGGTGGCCGTGGTGGTGGTGGCGGCGGCTATGGTGGTGACCGTGAGTCCTACTAA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3D_1_TraesCS3D01G417800
AGTTGTTTGTGGCATAACAATAACAATAATGTATGAATGAAGCATGCTTATATCAGGAACGAAACATCTATATATGTTTT
TTTTTCCAAAAGGATTGTGCAACATTTTTATGTGCGATAAACCGATACAGCAGTGCTGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AACATTTTCCTCTGATTTATCTCCCAGATTATCCCAGCGAGTGAATGCAAAACGCTTAATGGG
ACAAATGTTTTCTTGGAGAGCAGGGCAAGGATTATAAAGGCAAAATCAGCATGCCCGTAGCG------ACCGAGATCAGC
GGCTGGCTCATT--CCTATCCACCAACCAC-CGTCCAGCCCACCACGAGCCCACCAGATATTTTCCTCCAAGCCCTCGAG
ATATTTTGGAAGCCTGCTACATAAGGCCGCAGCGCACCACAAAACCCTAGC---CTCCGCCCCTCCCCTCTTAAACCCC-
AGCCCCCACTCCCCATTCCCCATTCCCCCCTCCCCCGCCGTCTCGTCCCAGCTCGCCCTCCAGAGGTACGCCCTGACCCT
CTTCCCCCTT---ATCTC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GCGGCGGCGGCGGCGGATCTGGCCTTGATCCGTCGC
CCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAAAATGGATCGATTGGCGGAGAAACGGGTAGGGTTTC
GCGCGGCTGTTGTC---TGATCTCTAATTCGTGAGGGTT-TAGGTGTTAGAGAGGGGCTCTCGAGTTGGATCTCGTTCGG
TTTTGTTCGATTATTTCGGGGCCGCCGTCATGGAAGTAAGGGTTGCGAGTTTCGGAGGGG-AACCGTGGTGTTCTTGGGA
TCTCGGCCTGAATTAGGCGGGATGGTCTGATCTGTTGGATTAGTCTATTATAGCAGGAGTATATCGTGTTTCTAGGGAGT
TTGCACCAGTAAAAGTTCTTT-TTTGTTTACAAATTTGTGCCTTTTTCCTCCGGTTGA---TGTGTCTAACCCTGTTTGC
CCCTTTC--------------GCTGATGATTTATTTTGTCGGTGCAGGTTTTAGTCTTCCTCCATGGCGGCCCTCATCAA
GCTCGGAAGCCTTCTTAGGCAGAGTGCTGTGGCTAGCAGTGCCTCCACCGGCTCGGCTCCTGCCCTGTTCAACGCTGCCC
GCTTCATGTGCGCCGGCCAGCCTGCTGATGGCTCCAAGCTTTTCGTCGGTGGTGAGTTTTCTTGCCTTACTTTTCTTGTA
CTGTATGTCCATTACCTTGTCTAGACCATCAGGTT---------------------------------------------
--------------------------TCAGTTTTATTTATCAGGTCTCGCCTGGGCTACTGATGATCATTCGCTGAAGGA
GGCGTTTCAATGCTTTGGTGAGGTCGTTGAAGGTCAGTGTATATCTTTCAAGCCTTATCAAATTTGCCAAAAGTCATTTT
ATCTGTTATGTACACACGGTGTCG--------------------------------------------------------
-----------------------------------GCTGTTTGTTCCGGTATGTGGTAGTT--------------ATTGT
TTGAAGATCTGAATGCTTAGCTATACATGGAAATTTGCTTGACTGTGCTT-TTATTCTGATGCTCTTTAGCTTACCTTGT
ACGGTGTATTAATTATTACGGCTTCATAATCCTTGTCTTTCATGTTACAGCTCGTGTTATCACTGACAGAGAGACTGGAA
GGTCTAGAGGGTTTGGTTTTGTGAGCTTCGCCAGCGGCGAGGATGCAAAGAGTGCTGCAGAAAACATGGACGGCAAGGTG
AGTCAAACC-AGAGTACCAGACATGTGTGCTGTTGTACTTTAATATGGAGTTAAACTTCTGCCATTTAGATGCTTATCAG
GGTTTGATAATTTTCACCATGTACTAAT-------------------------ACACCTTGTTAATTATTATTTCAAAGT
TTTGTGCCTGCCTTTAGCCAAATTGCCTAGGCCTGATACTGATGCCATGCTTCACTGGCCACTACTTTTAAGGATCTAAT
GTCCATCCAATGC-TTTGCAGGAGCTTGCGGGGAGGAACGTCCGTGTGAACTTCGCCAACGAGCGACCTTCGGGTGGTGG
CGGCGGCGGCGGCTTCTCTCGTGGCGGCGGTGGCTATGGAGGTGGTGGCGGCGGCTATGGTGGCGGTGGCTTTGGTGGTG
GCGGCGGATACGGTGGTGGCCGTGGTGGTGGTGGCGGCGGCTATGGTGGTGACCGTGAGTCCTACTAAGAAGAGCACTGG
CTATCAAATTTAAAATAATGA-GTTTTTAGGACAGTGTCTTGATTATGTGGAACCTAATGTTACGTCTGTCTGTTATCTG
CGATAGTTGAACTCAATAGGGGCAGAGATGTGGTTCTATGTTATTTTTGGTTTTGCTTT-TTTCTTGATGATGCAAGAGT
TAATTTGTGTATGCTGCTTCGAGGCTTGGATGAGTCTCAA-GGAAGTTTCATGCATTTTGCCGTATGTTGCGCTGTGTAC
TTGTAGAGAATGA----------TTGCGTATGTTAGTGTGA---TCATAAATTCTCTTCGCATTACATTCAAATATTA--
AGATCTTAGCTATAAATTTGGTAATGGTACCAGACTACGAGTGGCGTATTTTCTGTGTTGTATGCTGCCAAATAATAACC
ACAAGCAG----------------------------------------------ATAGTCTTACCAGCTACCAATGGAGA
ATTAATGAAGACTCACTATATATGCGTCGAATCTATATTTGAGTGG-----CCATCCCACCTTGTCCCTTAAATGTCCAT
TTTTAAGTCTGTGACACTAAAAATATATATTATAAAACGGCATAATTTAGATATTTCAAATGCAAATATTACAACAGAGA
TTTTCAATAGGTTTGTTGAATCCACAGCTTCTAAATTCAACGAGTTAGAATCACATCTCACGCATTATGTGCCCCTTGCT
CCATCCAACTCCATTGCGCCCCTTGAGCTCCATCCAAA---GGTACAAGCGTAAATCACAGGTTCATCGGCAGCGCGTCC
TATACAATTTGATGATTGTCAAGTTGTAACATT------------GAGTGAATCAACGAATTGACTGGCATGTAGAGCAA
CAAAATGCACAACTTATGATCTTCATGGTTGACGAGCCTGATGGTGACATTGTCTTCACTCGTGCAATTGCATCACAAAA
CTTCATGACTGAGTC-AAAGATGGTGTACCACCGATGATTCACGTGCAAGTTGTAGGGTGTGA-TTTTTTTCCTCATGAA
ACAAAGCATGCATGTTTTGCCAAAAGGTCAAGTC-
>chr3A_1
AGTTGTTTGTGGCATAGCAATAAC-ATAATGTATGAATGAAGCATGCTTATATCAGGAACCAAGCATTTATATATGTTTT
TTTGCCAAAA-GGATTGTGTAACATTTATATGTGCGATAAACCGATACAGCCAGGGCCGGGCCCACAGTTGTGCGTGCTG
TGCGGCCCGCACAGGGCCCATCAATTTAGGGGGGCCCAAACTTTTTAAATGCCTTTGTACATATTTTTTTCGAGTGTATA
GGTGTTGGGCCTCACATAGAACTGGGCCTCTGCCCGCTGGCGCGTGACTCCCCAGTGCGTGCGTCCATCGGGCCGCTGCT
CGACCATCCCAAGCCACTGCTCGATTCCTCGATTGCGATCCTAGCCGCCAGGGTGCTAGGGCATGCTGATCCGCTAGATG
CCTTGATCTCCCCTCAAAAAATTAATAAGCTAATCTGCTCGATTTTTTTGTAACCAAAGGCATCGAGCGCGGCAGGGCCC
TGGATTTTATTTTATTCATCTTTTATATCTTGTGTTTCAATACAACATAATTTGTTACGTAAGACACTATATCAAATATA
CATTATAATTGCTTGATATTTTTTTTTTCTAGTAAGATAGGACCTCATTTTTTAGTTTCGCACAAGGCCCCGGATTTTAC
CGGCCCGGTCCTGGATAAACATTTTTCTCTGATTTATCTCCCAAATTGTCCCAGCGAGTGAATGCAAAACGCTTAATGGG
AGAAATGTTTTCTTGGAGAGCAGGGCAAGGAG--TAAAAGCAAAATCGGCATGCCCGTAGGCCGTAGCGCCGAGATCACC
GGCTGGCTCATTTCCCTATCGACCAACCAC-CGTCCAGCCCACCACAAGCCCACCAGATATTTTCCTCCCAGACCCGGAG
ATATTTTGGAAGCCTGCTACATAAGGCCGCAGCGCACCACAAAACCCTAGCCGCCTCCGCCCCCCTCCTCTTAAACCCC-
AGCCCCCAGCCCCCAGCCCCCACTCCCC-ATTCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCGGCGGCGGCGGCGGCGGATCTGGCCTTGATCCGTCGC
CCCCTTCCGCTAGATTGCTTGCTGGTTGTTGTTATTAGTCTAAAAAGTGGATCGATTGGCGGAGGAACGGGTAGGGTTTC
GCTTGCCTGTTGTCTGATGATCTATAATTCGTGTGGGTT-TAGGTGTTAGAGAGGGGCTATCGAGTTGGATTTCGTTCGG
TTTCGTTAGATTATTTCGGGGCCGTCGTCATGGGAGTACGGGTTGCGAGTTTCGGAGGGG-AACCGTGGCGTTCTCGGGA
TCTCGGCCTGAATTAGGCGGGATGGTCTGATCTGTTGGATTAATCTGTTATAGCAGGAGTATATCGTGTTTGTAGGGAGT
TTGCACCAGTAAAAAATCTTTCTTTGTTTGCAAATTTGTGCC--TTTCCTCTGGTTGA---TGTGTCTAACCCTGTTTGC
CCCTTCGGTTCGTT----TTTGCTGATGATTTATTTTGTCGGTGCAGGTTTTAGTCTTCCTCCATGGCGGCCCTCATCAA
GCTCGGAAGCCTTCTTAGGCAGAGTGCTTTGGCGAGCAGTGCCTCGACCGGCTCGGCTCCTGCCCTGTTCAACGCTGCCC
GCTTCATGTGCGCCGGCCAGCCCGCTGGTGGCAATAAGCTTTTCGTCGGCGGTGAGTTTTCTTTCGTCGCTTTGCTTGTA
CTGTATGTCCATGACCTTGTATTGTAGAACTTGGCTCAGGTCTGGCCTATCCACTAACAACTTTTTTGTGTAGAACATGA
CTCTAGAAGCCTATCCACTAACGACCTTAGTTTTATTCATCAGGCCTGGCCTGGGCTACTGACGATCATTCGCTGAAGGA
GGCGTTCCAAAGCTTTGGAGAGGTCGTTGAGGGTCAGT--ACATCTTGAAGCCTTGATCAAATC-TGTATAAGTCATTTT
TTCTGGTATCTGTACAATAATACATGGAACTACTCCCTCTGTACCGAAATAGTTGTCGCTGGAGTAGCTGAACTTCAGCT
ACTCCAGCAACAACTATTTTGGTACAGAGGGAGTAGCTGTTTGTTCTGGCATGGTTCATGTTAATGTTGCACTTAATTGT
TTCAAGATATGAATGTTAAGCAATACATGGGAATTTGCTTGACTGTGCTGGTTGTTCTGATGCTTTTCA-CTTATCTTGT
AT-------------TTACTGCTTCATAATCCCCATCTTTCATGTTACAGCACGTGTCATCACTGATCGAGAGACTGGAA
GGTCTAGAGGGTTTGGTTTTGTGAGCTTTGCGAATGAAGCTGATGCAGATAGCGCTGCAAAAGGCATGGACGGTCAGGTG
AGTCAAAACTAGAGTATCAGACAT--GTGCTGTTCTACTTGACAATAGAGTTTACTTCTA-CCATTTAGATGCTGATTAG
GGTTTGATAATTTTCACCATGTACCATGTGCCTGCCGTTCCGTCAGGTGGAAAACACCTTGTCAATTATTGTTTCAATGT
TTTGTTCCTCCCTTTAGTC--ATTTGCTTGGCCTGATCCTGATGCTATGCTTCATTGGCCACTAGTTATAAGGATCTAAT
GCCCATCCAATGC-TT-GCAGGAGCTTGCAGGGAGGAACGTCCGTGTGAACTTCGCCAATGAGAGGCCTTCGGGTGGT--
-------GGCGGCTTCTCACGCGGCGGCGGTGGCTATGGAGGAGGTGGTGGCTTTGGCGGCGGCGGCGGCTATGGTGGTG
GCGGCGGCGGCTATGGCGGTGGTGGCCGAGGTGGCGGTGGCTATGGTGGTGACCGTGAAGCTTTCTAAGGAGAGCGCAGA
CTATCAAATTTAAAATAATGCGC-TTTTAGGACAGTGTCTTGATTATGTGGAACCTATGTC-ACGTCTGTCTGTTATCTG
CGATAGTTGAACTCAATAGGAGCAGAGATGTGGTTCTAG--TATTTTTGTTTTTGGTTCGTTTCTTGATGGTGCAAGAGT
TTAAGTC---ATGCTGCTTCGAGGCTTGGATGAGTCTCAATGGAAG-TTCATGCATTTTGCCGTATATTGCACTGTGTAC
TTGTGGTGAGTCTCTGAGTTAAGTCGTGTATGTTAGTCTGATTATCATAAATTCTCCAAGTATTACATTCAAACATGA--
AGATCTTTGCTAGGAATTTGCTACTGGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3B_183
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AATGCAAAACGCTTAATAGG
AGAAATGTTTTCTTGGAGAGCAGGCCAAGGAGTTTAAAAGCAAAATCGGCATGCCCGTAGCG------GCCGAGATCACC
GGCTGGCTCATT--CCTATCCACCAACCAC-CGTCCAGCCCACCACGAGCCCACCAGATATTTTCCTCCCAGACCCGGAG
ATATTTTGGAAGCCTGCTACATAAGGCCGCAGCGCACCACAAAACCCTAGCCGCCTCCGCCCCCCTCCTCTTAAACCCCC
AACCCCCACTCCCCATTCTCCATTCCCCCCTCCCCCGCCGTCTCGTCCCAGCTCGCCCTCCAGAGGTACGTCCCGCCCCT
CTTCCCCCCTCTGATCTC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GCAGCGGCGGCGGCGGATCTGGCCTTGATCCGTCGA
CCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAGAATGGATCGATTGGCGGAGGATCGGGTAGGGTTTC
GGTTGCCTGTTGTC---TGATCTCTAATTCGTGTGGGTT-TAGGCGTTAGAGGGGGGCTATCGAGTTGGATTTCGTTCGG
TTTCGTTCGATTATTTCGGGGCCGTCGTCATGGGAGTACGGGTTGCAAGTTTCGGAGGGGGAACCGTGCTGTTCTTGGGA
TCTCAGCCTGAATTAGGCGGGATGGTCTGGTCTGTTGGATTAATCTGTTATGGCAGGAGTATATTGTGTTTCTAGGGAGT
TCGCACCAGTAAAAATTCCTTTTTTGTTTAGAAATCTGTGCCCTG-TCCTCTGGTTGCTACTGTGTTTAACCCGGTTTGT
CCCTTCGGTTCGTTCTCCTTTGCTGATGATTTATTCTGTCGGTGCAGGTTTTAGTCTTCCTTCATGGCGGCCCTCATCAA
GCTCGGAAGCCTTCTTAGGCAGAGTGCTGTGGCGAGCAGTGCCTCGACCGGCTCGGCTCCTGCCCTGTTCAACGCTGCCC
GCTTCATGTGCGCCGGCCAGCCTGCTGATGGCTCCAAGCTTTTCGTTGGCGGTGAGTTTTCTTGCCTTACTTTGCTTGTA
CTG--TGTCCATTACCTTGTCTAGACCATCAGGT----------------------------------------------
-------------------------CTCAGTTTTATTTATCAGGTCTTGCCTGGGCTACTGATGATCATTCGCTGAAGGA
GGCGTTTCAAAGCTTTGGTGAGGTCGTTGAAGGTCAGTGTATATCTTTCAACCCTTATCAAATT-GCCAAAAGTCATTTT
ATCTGTTATTTATACACGGTGT----------------------------------------------------------
---------------------------------TAGCTGTTTGTTCTGTATGT--GTAGTC--------------ATTGT
TTCAAGATCTGAATG-TTAGCTATACATGGAAATTTGCTTGACCGTGCTT-TTATTCTGATGCTCTTTAGCTTACCTTGT
ACGGTGTATTAATTATTACCGCTTCATAATGCTTGTCTTTCATGTTACAGCACGTGTTATCACTGACAGGGAGACTGGAA
GGTCTAGAGGGTTTGGTTTTGTGAGCTTCGCCAGTGGCGAGGATGCAAAGAGTGCTGCAGAAAACATGGACGGCAAGGTG
AGCCAAAACCAGATTTTTAGACATGTGTGCTGTTGTACTTCAATATGGAGTTAAACTTCTGCCATTTAGATGCTTATCAG
GGTATGATAATTTTCACCATGTACTTACG---------------------------CCTTGTTAATTATTATTTCAAAGT
TTTGTGCCTGCCTTTGGCCAAATTGCCTAGGCCTGATATTGATGCCATGCTTCACTGGCCACTACCTTTAAGGATCTAAT
TTCCATCCAATGCTTT-GCAGGAGCTTGCTGGGAGGAACGTCCGTGTGAACTTTGCCAACGAGCGACCTTCGGGTGGTGG
CGGCGGTGGC---TTCTCTCGTGGCGGCGGTGGCTATGGAGGTGGTGGCGGCGGATACGGCGGCGGTGGCTACGGTGGTG
GCGGTGGATACGGCGGCGGCCGTGGTGGTGGTGGAGGTGGCTATGGTGGTGACCATGAGTCCTACTAAGAAGAGCACTGG
CTATCAAATTTAAAATAATGAAGTTTTTAGGACAGTGTCTTGATTATGTGGAACCTAATGTTAC----------------
-----------------------------GTCGTTCTATGTTCTTTTTGGTTTTGGTTTGTTTCTTGATAGTGCAAGAGT
TAATTTGTGTATGCTGCTTCGAGGCTCGGATGAGTCTCAA-GGAAG-TTCATGCATTTTGCCGTATATTGCACTGT--AC
TTGTAGAGAATGA----------TCGCGTATGTTAGTGTGA---TCATAAATTCTCTTCGCATTACATTCAAATATATTG
AGATCTTCGCTAGAAATTTGGTAATGGTACCAGACTACCAGTGGCGTATTTTCTATGCTGCCGAAAGTTAGAAAAGAACA
AAAGACAGTTTTCGGATAACACAGTTCAAAGGCACGCTAGTAAAATTTGTTGATATAGGCCAACCAGCTATCAATGGAGA
ATTAGACTAGATATACTTAGAAATTAGAATCTACTCCCAGTATATTTGTGACCATCCCACCTTGTCCCTTAAATGTCCAT
TTTTAAGTCTGTGACACTTAACAAT-------TAAAACAGCATAATTTTGATATTTCAAATGCAAATATTACAACAGAGA
TGTTCAATAGGTTTGTT---TCCATAGATTCTAAATTCAACGAGTTAGAATCACATCTCA--------------------
--------CTCCATTGTGCCCCTTGAGATCCATTCAACAAGGGTACAAGCGTAAATCACAGGTTAACCGGCAGCGCGTCC
TATACAATTTGATGATTGTCAAGTTGTTTGTCAAGTTGCAACATGGAGTGAATCAATAAATTGGCTGACATGTAGAGCAA
CAAGACGCAAAATTTATGAATTTCATGGTTGACGAGCCCGATGGCCACATTGTTTTCACTCGTGCGATCGCATCACAAAA
CTTCATGACTGAGTTAAAAGACGGTGTACCACCGATGAATGACATGCAAGTTGTAGGGCGTGATTTTTTTTTCTCGTGAA
ACAAAGCATGCACGTTTTGCCAAAAAGGTCGAGTC
>chr3D_196
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TAATGGG
AGAAATGTTTTCTTGGAGAGCAAGGCAAGGAG--TAAAAGCAAAATCGGCATGCCTGTAGCG------GCCGAGATCACC
GGCTGGCTCATC--CCTATCCACCAACCACACGTACAGCCCACCACGAGCCCACCAGATATTTTCCTCCAAGCCCTCGAG
ATATTTTGGAAGCCTGCTACATAAGGCCACAGCGCACCACAAAACCCTAGCCACCTCCGCCCCTCTCCTCTTAAACC-CC
AGCCCCCACTCCCCATTCCCCATTCCCC-CTCCCCCGCCGTCACGTCCCAGCTCGCCCTCCAGAGGTACGTCCTGCCCCT
CTTCCCTCTG---ATC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CAGCGGCGGCGGCGGATTTGGCCTTGATCCGTCGC
CCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAAAATGGATCGATTGGCGGATAAACGGGTAGGGTTTC
GCGCGGCTGTTGTC---TGATCTCTGATTCGTGTGGGTTCTAGGTGTTAGAGAGGGGCTATCGAGTTGGATTTCGTTCGG
TTTTGTTGGATTATTTCGGGGCCGTTGTCATGGGAGTACGGGTTGCGAGTTTCGGAGGGG-AACCGTTGTGTTCTTCGGA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
----------------S-------S-----------------------------------S--S---S------------
---SS-S---S--------S-------S-----------------------SSS-SSSS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-----------------S---S--------------------------------
-S-----------------------------S-S----S--------S--------------------S---------S-
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------------------------S----S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S-------------------------S-----------S--------
------------------------S--------S----S-----------------------------------------
------------------------------------------S---S---------------------------------
--------------S---------------------------S--------S----------------------------
-----SS-------------------------------------------------------------------------
---------------------------------S-----------S----------------------------------
-------------------------------------------------S-----------------------S------
----------------------------------S---------------------------------------------
-----------------------------------------------S--------------------------------
----------S----------------------------------------S------------S---------------
---------S--S----------S--------------------------------------------------------
----------------------------------------------S--S---SS-------------------------
--S------------S----------------------------------------------------------------
-------------------S-------------------------------S----------------------------
----------------------------------S---------------------------------------------
-------S--------S-----------------------S---------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
----------------S------------S--------------------------------------------------
------S-----------------------------------------------S--S--S----------S--------
----------------S--------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------------S--------------S---------
----------------------------------------------S-------------------S----S--------
------------------------S---------------------------------------------------S---
-------S----S-------------------------S---------------S--S--SSSSSS-SS-S-S--S---S
-S-SS-----------------------------------------------------S-SS--------S---------
----SSSS---SSS---SSSS-SSSSSSSSS-SSSSSSSSS-SSSS----------------------------------
------------------S--S-SSSSSSSSS------S---------S-------------------------------
-S---------------SSS----S--S--------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSS--------S----------S-----S---S--------------------------S-S-------------
---------------------------SSSSSS-----------------------SS-----S---S------------
---S-S---S--S------SS-----------------S-----SS-------S-----------S--S-----------
--------------S------S----------------S-S--S--------------S------------S---S----
------------S------------S-SSSSSSS-
>forward_754
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGAGAGCAGGGCAAGGATTA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_2491
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGCTTTGGTGAGGTCGTTGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1832
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGGGGCTCTCGAGTTGGATC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_3957
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATTTGAGTGGCCATCCCACC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
