>input_sequence_61303
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-----------------------------------------------------------------------ATGGGGAAC
TTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGGGTCGTGCTCCCCGACGGCGGGCTCAGGCT
GGTCAGGCCCCCGGCGACGGCGGCGGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGACCGACGCGCGCGCGCTGCAGG
CCGGGCGCCGGATCGAGGCGCTCGCGGCTGACGACGACCTCGAGCTCGGGGGCGTCTACGCCGCCTTCCCCATGAAGCGG
CTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCGCGCCTGGCCGCCGTTTTCGCCAGGGAGGCTCACGCCCGGAGGCCAGC
CTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGCGGCTTCCGTTGCCGCCGAGGCG------------GTCA
GGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAACGGATAAGC
GGCGGTCGCTTGTCGAGGCGGCGACCGACGTTGGAGACCATACAGGAGGAGAGCTACGCCGCACAAGCATGCTAATGCTA
CAAGTCAAGTGGCCATCTAACAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ACCGAGAGATGGCAAAGGCCTTCTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCTTTTTCAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTATTTTTGAGCGATGAAAGGGCAAT
TGAACCCAAAAAATA---TGGTGGGCAAGTGATTAATGAATCAAGGAGATCCATCATT---TTTTTATCAGTGAGTCAAG
GAGATCGAGCAATTCTCACTTACCCATGGGCGACACTAGTA---------TAATTCCATTTCTGCTTTTGTTTTCTTAAT
ATAAACTTCAAATTTCC--TTTGTTATAACTCAACAACGACGAGCGATCTTTTTTTTTTTCTATTTCTTTGTCGAAAGGA
TTCATAC--ATATATAGAAAGCCGGAGCTGCCTCCGGTTGA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-
>chr3D_1_TraesCS3D01G264600
GTCGCCAAGGAAGAGGCCGTGGTTCGAGAAGATGCAGGCCGACATGCTCAAGTTCGACGACGAGTGATCTATGGCGGCGA
GGACCATCTTTTCGTATGCCGGCAGGTGTGCCGGCATGACCACGGGAGCCGCGATGGTGTGGTCGAACTCAAGTCCCACC
TTTTCTGTGTGCTGGCATGTGTGCCGGCCGGCTGGCGAGTGCGTCAGCATGAACTGTGGTGATATTTTCTGAAGCCGGCA
TTGTATGCCGGCGCTGGCATGGAGCCGGCATGAGACAAGGCCGCCGGCATGATCGGCCGCGGGCTCTTTTTATTTAAAAG
TTGAATACGGACATGAAATAGGTCGGCGCGTTGGGCGCACTGCCGACCCAAATGCATAACTGGGCGGATGCCGGGCGGGT
GGCCGACCCAAACGGACGTCGGCCCGCTGGAGTTGCTCTAACTGATCAGCGAGTGGATTTTCGCTAGTTGGTCGTAATAT
GTCACTCATCAGCAAGTGGGTTTTTGCTAGCTGGTCGTGATCGTAATATGTAACTGATCAACAAGTGGATTTCACGCGGG
ATAACGTGGGCGAT--------TATCCAGGATTATCACTGATCAACAAGTGGATTTTACAGGGTAATGGCATAGGTTTCT
TTCTCGTCCCCCACCGGCGAGG-----GAGGGAGGGAGCCCAACCGAAGCCGAACGAACGAAC--------TCCCGTCCA
GTGC------CCGTGGTCGGTCGGGCCCACGCGCAAATCCTCCTGGACGACGACGCCAACCCACCTGGCCACCACCACCC
CACTCCTCACTCAGCTCACCTTTCGTCCGTTCCTCTCGCTCCTCGCACCCACCCACCA--CACGCCACCGTCGTCAC---
-ATCCATCGTCCATCGCACGCGTTTCCTCC----AG---TATATATC-TCCCGCGCAACGCATCCCAGGCAGCGCAGCCA
CACACACACA--CAC------CAACTCTCATTCCTCGCACTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------TGTCTTCAAGCTTATCGCCTT---------TATCCTATCTCCGGCCTCTCTTCGGCATGGGGAAC
TTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGGGTCGTGCTCCCCGACGGCGGGCTCAGGCT
GGTCAGGCCCCCGGCGACGGCGGCGGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGACCGACGCGCGCGCGCTGCAGG
CCGGGCGCCGGATCGAGGCGCTCGCGGCTGACGACGACCTCGAGCTCGGGGGCGTCTACGCCGCCTTCCCCATGAAGCGG
CTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCGCGCCTGGCCGCCGTTTTCGCCAGGGAGGCTCACGCCCGGAGGCCAGC
CTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGCGGCTTCCGTTGCCGCCGAGGCG------------GTCA
GGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAACGGATAAGC
GGCGGTCGCTTGTCGAGGCGGCGACCGACGTTGGAGACCATACAGGAGGAGAGCTACGCCGCACAAGCATGCTAATGCTA
CAAGTCAAGTGGCCATCTAACAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ACCGAGAGATGGCAAAGGCCTTCTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCTTTTTCAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTATTTTTGAGCGATGAAAGGGCAAT
TGAACCCAAAAAATA---TGGTGGGCAAGTGATTAATGAATCAAGGAGATCCATCATT---TTTTTATCAGTGAGTCAAG
GAGATCGAGCAATTCTCACTTACCCATGGGCGACACTAGTA---------TAATTCCATTTCTGCTTTTGTTTTCTTAAT
ATAAACTTCAAATTTCC--TTTGTTATAACTCAACAACGACGAGCGATCTTTTTTTTTTTCTATTTCTTTGTCGAAAGGA
TTCATAC--ATATATAGAAAGCCGGAGCTGCCTCCGGTTGAACCTGGGCAGCCCAGCCAACAACTTTCATTGGAATGTTA
AGAGCAACTTCAACACAGTGACCCAAACGGATATGGATTTTGTCCGCATTTTATCCGTTTCGGTCGGCCGTCCGCCTAGC
GGAGGCGGACAGGGGCTGCCCGTGGATGAAACCAACGCACAAGACAAAAAAGCGGACACGCAAGGTTGTCGGCGTGGAGA
TGCAACTTTCCTCCCGCCCCGCCACGGCCGCGGCTCGTGCCGCAGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCACGAGCTTGCCACCCCGCTCCCGCCCCGAGCTCGCC
GCCTCGCTCGCCATGCAGCCCCGAGCCCGCCGCCCCACTCGCCGCGCTCGGGCCTCCCTCCCTGAGCTCGCCACGCCCAG
CCAATGAACTGCTGCTGCTGTGGCCGCGGGCGATGCGGGAGGTCGCCTTCGAAGTCGAGGACGCCGTCGACGAGGCTTAG
AACGGGAGGCGGCGGCCAGCGCCGGTGGCCTCGCTGGTTCGCGGCGGCGGCCTGCGCAGGTGGCCTCGTCGGCGAGTGTG
GCGGCGGCCTGTGCATGTGGTCTTGCCGGTGCATCGGTATTCGCTCGTACGCGGTCGCTGATATTTGGGTCTAGGGCGGA
CACGAGCGGGCGACAGGAGCATCCGCTTTTATCCATCGCGGACCCATTTGTGACTCAAATTTGGGCTCAATTTGGATCAA
G
>chr3A_437
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TCTAACTGGTCAGCGAGTGGATTTTCGAGAGTTGGTCGTAACAT
GTCACTCGTCAGCAAGTGGATTTTTGCTAGCTGGTCGTGATCGTAATATGTAACTGATCAACAAGTGGATTTCACGCGGG
ATAACGTGGGCGAT--------TATCCAGGATTATCACTGATCAACAAGTGGATTTTACAGGAG-------TAGGTTTCT
TTCTCGTCCCTCGCCGGCGAGGCGAGGGAGGGTGGGAGCCCAACCGAAGCCGAGCCAACGAAC--------TCCCGTG--
--GC------CCGTGGTCGGTCGGCCCCACGCGCAAATCCTCTTGGACGACGACGCCAACCCACCTGGCCACCACCACCC
CACTCCTCACTCAGCTCACCTTTCGTCTCTTCCTCCGGCTCCTCGCACCCACCCACCCACCACGCCACCGTCGTCACCCA
CATCCATCGTCCATCGCACGCGTTTGCTCGCGCCACTGCTATATATCTCCCCGCGCAACCCGTCCCAGGCAGCGCAGCCA
CACATACCCA--CAC------CAACTCTCATTCCTCGCACTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------TGTCTTCAACCTCATCGCCTTTATCCATCCTATCTCCGGCCTCT-CTCTCTTCGGCATGGGGAAC
TTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGAGTCGTGCTCCCCGACGGCGGGCTCAGGCT
CGTCAGGCCCCCGGCCACGGCGGCGGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGCGCTGCAGG
CGGGCCGCCGGATCGAGGCGCTCGCGGCTGACGAAGACCTCGAGCTCGGCGGCGTCTACGCCGCCTTCCCCATGAAGCGG
CTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCACGCCTGGCCGCCGTTTTCGCCAGGGAGGCTCATGGCCGGAGGCCTGC
CTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGCGGCTTCCGTTGCCGCCGAGGCGGACCTCGCGCCGGTCA
GGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAACGGATTAGC
GGCGGCCGCTTGTCGAGGCGGCGGCCGACGTTGGAGACCATACACGAGGAGAGCTACGCCGCGCTAGCATGCTAATGCTA
CAAGTCAAGTGGCCATCTAACAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ACCGAGAGATGGCAAAGGCCTTCTCTCGTATTCTTTTTTCCCCTTTTTTTGACCATGTGTAA
ATTTGCT-------------------------------------------------------------------------
----------------------------------------------------------GCCTCTTTTTCAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTATTTTTGAGCGATGAAAAGGCAAT
TGAACCC-AAAAATA---TGGTGGACAAGTGATTAATGAATCAAGGAGATTCATCATT---TTTTTGTCAATGAGTCATG
GAGATCGAGCAATTCTCACTTACCCATGGGCAACACTAGTACTCCTTTTATAATTCTATTTCTGCTTTTGCTTTCTTAAT
ATCAACTTCAAAATT-CCTTTTGTTATAACTCAACAACGACAAACGATCTTTTTCTTT----CTTTCTTTGCCGAAAGGA
TTCATACGTGTATATACAACGGCGGAGCTGCCTCCCGGTGAACCTGGGCAGCCCAGCCAACAACTTTCATTGGAATGTTA
ATAGAACTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr3B_440
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AACTGATCAGCGAGTGAATTTTGGCTTGTTGGTCGTAACAT
GTCACTCGTCAACAAGTGGATTTTTGCTAGCTGGTCGTGATCGTAATATGTAACTGATCAACAAGTGGATTTCACGCGCG
ACCGCGCGGGATGATAGAGTACTATCCAAGATCATCACAGATTAACAAGTGGATTTTGCAGGGTAATGGTGCAGGTTTCT
TTCTCGTCCGCAGCCCGTCCACACCG-----------GCCGAACCGAAGCCGAACGAACGAACGAACTCACTCCCGTCCA
GTGCCCGTGGCCGTGGTCGGTCGGCCCCACGCGCAAATCCAGTCGGACGACGACGCCAGCCCACCTGGCCACCACCACCC
CACTCCTCACTCAGCTCACCTTTCGTCTCTTCCTCTCGCTGTTCG--------CACCCACCACGCCACCGTCGTCGC---
-ATCCC----CCATCGCACGCGTTTGCTCACGCCACCGCTATATATC-TCCCGCGCAACCCATCCCAGGCAGCGCAGCCA
CACGCAAGTCATCAC------CAACTCTCATTCCTTCATT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------CCTTT-------------ATCCTATCCTATCCCCGACCTCTCTCCGGCATGGGGAAC
TTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGGGTCGTGCTCCCCGACGGCGGGCTCAGGCT
GGTCAGGCCCCCGGCGACGGCGGCCGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGCGCTGCAGG
CCGGGCGCCGGATCGAGGCGCTCGCGGCTGACGAGGACCTCGAGCTCCGGGGCGTCTACGCCGCCTTCCCCATGAAGCGG
CTCGGCTCCAAGGCCGCGCCCACGGACTTGGCGCGCCTGGCCGCCGTTTTCGCGAGGGAAGCTCATGGGCGGAGACCCGC
TTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGTGGCTTCCGTTGCCGCCGAGGCGGACCTCGCGCCGGTGG
CGACC---CGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAACGGATTAGC
GGCGGTCGCTTGTCGAGGCGGCGACCGACGTTGGAGACCATACACGAGGAGAGCTACGCCGCACTGGCATGCTAAAGCTA
CAAGTCAAGTGGCCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TCTAACAAACCGAGAGATGGCAAAGGCTTTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTTTTGAGCGATGAAAGGGCAAT
TGAACCC-AAAAATATGGTGGTGGACAAGTGATTAATGAATCAAGGAAATCCATCATTTTATTATTATCAATGAGTCAAG
GAGATCGAGCAATTCTCACTTACCCATGGGCAACACTAGTA---------TAATTCTGTTTCTGCTTTTGTTTTCTTAAT
AGCAATTTCAAAATTCCCTTTTGTTATAATTCAACAACGACAAACGATCTTTTTTTTTCTTTCTTTCTTTGTTGAAAGGA
TTCATAC--GTATATACAACGGCTGAGCTGCCACCCGGTGAACCTGGGCAGCCCAGCCAACAACTTTTATTGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>chr3D_864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------CACGCGTTTCCTCC----AG---TATATATC-TCCCGCGCAACTGATCCCACGCAGCGCAGCCA
CACACGCTG----AACCATCACAACTCTCATTCCTTGCACTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------TGGCTTCGCCTTT-------------ATCCTTTCTCTGA------CTCTCTTCGGCATGGGGAAC
TTGGCGTCCTGCACGCTGGCCATGATCCCCAGGGCGGCCAAGGACGTCAGGATCGTGCTCCCCGATGGCGGGCTGAGGCT
GGTCAGGCCCCCGGCGACGGCGGCGGAGCTGATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCACGCTGCAGG
CGGGGCGCCGGATCGAGGCGCTTGCGGCTGACGAGGACCTCGAGCTCGGGGGAGTCTACGCCGCATTCCCCATGAAGCGG
CTTGGCTCCAAGGCCGTGCCCGCCGA------------------CGTTTTCGCCAGCGAGGCTCATGCCCGGAGGCCCGC
TTCGGCCAAGGTGGCGGACATCGTCGTGGCGCCTACAGGGGTGGCTTCCGTTGCCGCCGAGGAGGACATCCCACCGGTCA
GGACGCCGCGGTTGGATGAGATGGCCGTGGACAACGAGGCGGTTGCGGCAGAGATCGAAGAGCTCAATCAACGGATAAGC
GGCGGTCGCTTGTCGAGGCGGCGGCCCACGTTGGAGACTATACACGAAGAGA----------------------------
--------------------------------------------------------------------------------
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-
>chr3D_864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CACGCGTTTCCTCC----AG---TATATATC-TCCCGCGCAACCGATTCCACGCAGCGCACGCA
CACACGCCGAACCAACCATCACAACTCTCATTCCTTGCACTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGTCTTCGCCTTT-------------ATCCTATCTCTGG------CTCTCTTCGGCATGGGGAAC
TTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGACGTCAGGATCGTGCTCCCCGATGGCGGGCTGAGGCT
GGTCAGGCCCCCGGCGACGGCGGCGGAGCTGATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGAGCGCGCTGCAGG
CGGGGCGCCGGATCGAGGCGCTTGCGGCTGACGAGGAACTCGAGCTCGGGGGAGTCTACGCCGCCTTCCCCATGAAGCGG
CTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCGCGCCTGGCTGCCGTTTTCGCCAGGGAAGCTCACGTCCGGAGGCCTGC
CTCGGCCAAGGTAGCGGCCATCGTCGTGGCGCCGCCTGAGGTGGCTTCCGTTGCCGCCGAGGCGGACCTCGCGCCGGTCA
GGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAACAGATTAGC
GGCAGTCGCCTGTCGAGGCGGCGACCGACGTTGGAGACCATACAGGAGGAGAGCTACGCCGCACTAGCATGCTAATGCTA
CAAGTCAAGTGGCCATCTAACAAACGGTTAACATTTGAGAAAGCATAGGCTTTCCTACACCCCCTTATCTAGCCACTTAT
TTTTTCATCGCGATTCGTGCGAGTATATTTGTCTTTTTTGTTTCTCCCATATAGAACAACATATGAACTTCAAACTTGGC
AGCTCAACAAAACATTCTTATTAGAATGTGGGAAAAAAACTTTTAGAATTTTTTGTGCAATATAAATACTAAAAAGTACA
TTTTTTAATAAAAAAAATCTAATTTCGTATATTTATGTTTAACGAAACAATCTGAAAGTTTTTTCTCACATTCTAGTTAG
AACGTTTTGGTGTCTTGCAAAGTTTGAAGTTCATATGTTGTTTTATTTTGAAGAAACAAAAAAGAGAAAATCTAATGTAC
AAAGTTGGTTGTCTAGCACAAATCTTAAAGCAATGTTGGAGGGTAAGGATAAGGAGTGTCCAGAAACCTGAGCTGTAAAA
ATCCGCGTCCTCTAACAAACCGAGAGATGGCAAAGGCCTTCTCTCG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr3A_864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CACGCGTTTCCTCCGGCTAG---CATATATC-CCCCGCGCAACCGATCCCACGCAGCGCAGCCA
CACACGCCG----AACCATCACAGCTCTCATTCCTTGCACTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGTCTTCGCCTTT-------------ACCCTATCTCTGA------CTCTCTTCGGCATGGGGAAC
TTGGCGTCCTGCATGCTGGCCATGATCCCCGGGGCGGCCAAGGACGTCAGGATCGTGCTCCCCGGTGGCGGGCTGTGGCT
GGTCAGGCCCCCGGCGACGGCGGCTGAGCTGATGCTCGAGGCGCCGGGCCATTTTCTGGCCGACGCGCGCGCGCTGCAGG
CGGGGCGCCGGATCGAGGCGCTTGCGGCTGATGAGGACCTCGAGCTCGGGAGAGTCTACGCCGCCTTCCCCATGAAGCGG
CTTGGCTCCAAGGCCGTGCCCGCCGACG------------------TTTTCGCCAGCGAGGCTCATGCCCGGAGGCCCGC
TTCGGCCAAGGTGGCGGACATCGTCGTGGCGCCGCCCGGGGTGGCTTCCGTTGCCGCCGAGGCGGACGTCGGGCCGGTCA
GGACGCCGCGGTTGGATGAGATGGCCGTGGACAACGAAGCGGCTGGGGCAGAGACCGAAGAGCTCAATCAACGGATACGT
GGCGGTCGCTTGTCGAGGCGGCGGCCCACGTTGGAGACTATACACGAGGAGAGCTACGCCGCACTACCATGCTAATGCTA
CAACTCAACTGGCCACTTG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ACAAACTGAGAGATGGCAAAGGCCTTCTCTCG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-
>chr3B_864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CACGCGTTTCCTCC----AG---TATATATC-TCCCGCGCAACCGATCCCACGCAGCGCACACA
CACACGCCG----AACCATCACAACTCTCATTCCTTGCACTCCGGTCTCCCTTTATCCTTTCTCTGACTCTCTTCGGCAT
GGGGAACTTCGCGTCCTGCACGCTGGCCATGATCCCTGGGGCGGCCAAGGACGTCAGGATTGTGCGAAAATATTGTACGG
AGCCATGGTGCAGTCGAACCCATGCTCAACACCGTACATCCTCTCACACCATCTATTGGGATTTGTGTCCGGCGCGCATC
AAAACTCATGGCGGGAGTCATTAACTGATGTTTAATAGACTACTAGCATTGCTAATAAAGCCCACTGTTTGCTGATCCCC
CTAGGCATTAAATTATTAACCTTGAATTGGTACATACAATACGTCTTCAATCTCCATGTTGACTAGGTCAGCTCACTATT
TCTTATTCGCATTGTTATGTGTGATTGTAACAATCCCACTCACGAAAAATATGTGTTTAGTGCTCTGACTTTGTTCTTTT
CCTCCTTTTTTCTTTTTTGCAGAAAATTTTGTTCTTCATTTCACTCTGTGTAAAGTGATTTTCTTGGTGTCTTACTGTTT
TTTGTGTCACCTCAGACGAATATGTGTCAGTTAACTGACAAAATTCAGTATTTTGTTCTGACAAAACGTGAACGCATATT
TTTCTAACAAAACTAAGCCTTTTGTTTTGGCAAAATCAGAGGATAAGCACAAGAGACAATATGTTTGCTATGTTCATCAA
TTTGTACAGGAGAATATGAAGAGTGCTGAACATATATATTTTTTATTCTCAAAGTTTGTCTAGTGTGCTACAGTACTTGG
GAGCGCGTGCCAACACATGCAGATTAAAGAAAGGTGAGCACTGCTGCAGGTCTACAAGTTAAATGATCAGTATATGATTA
GCACAAACAATAAAATTTGAATCCTAACATGGCCCGTATCCTCATGGAAGTACTGCTACATCCAACGGCGCTGAGCATGG
CCTGATGCGGATCAAACGGTTACAAAATCGTGCACGCCTGTTGCAATATTCCGTCCGTCTGGATTTTAGCTTTTACCTTT
ATTTAATTACTATTTTTTTCATATAAAGTGCATATACACACATGTACCAAACATCCGCGTTTCAGAATGCTCCTATTATA
TCACGCGTTTCCTCCTGTGTATATCTCCTGCGCAACCGATCCCACGCAGCGCACGCACACACGCCGAACCATCACAACTC
TCGTTCCTTGCACTCTGGCTTCGCCTTT-------------ATCCTTTCTCTGA------CTCTCTTCGGCATGGGGAAC
TTCGTGTCCTGCACCATGGCCATGATCCCCGGGGCGGCCAAGGACGTCAGGATTGTGCTCCCCGATGGCGGGCTGAGGCT
GGTCAGGCCCCCGGCGACGGCGGCGGAGCTGATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGCGCTGCAGG
CGGGGCGCCGGATCGTGGCGCTTGCAGCTGACGAGGACCTCGAGCTCGGGGGAGTCTACGCCGCCTTCCCCATGAAGCGG
CTTGGCTCCAAGGCCGTGCCCGCCGACG------------------TTTTCGCCAGCGAGGCTCATGCCCGGAGGCCCGC
TTCGGCCAAGGTGTCGGACATCGTCGTGGCGTCGCCAGGGGTGGCTTCCGTTGCCACCGAGGAGGTCATCCCACCGGTCA
GGACGCCGCGGTTGGATGAGATGGCCGCGGACAACGAGGCGGCTGCGGCAGAGATCGGAGAGCTCAATCAACGGATAAGC
GGCGGTCGCTTGTCGAGGCGGCGGCCCACGTTGGAGACTATACACGAGGAAAGCTACGCCGCACTAGCATGCTAATGCTA
CAAGTCAATTAGCCTCT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S--
-------S-----------S------------------------------------------------------------
---------------------------------------------------------------------SS---------
------------S-------------------S-----------------------------------------------
------------------------S-----------------S-------------------------------------
---------------------------SS----------------------------S----------------------
-----------------------------------------------------------S--------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-----------------------------S---S---------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
----------------------------------S---------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S----------------S---------------------------------------------S---------
-------------------------------S------------------------S-----------------------
--S---------S----------------------------S-S--------------S-S-S-----------------
---------S------S--S-S-------------S-S------------------------------------------
-S--S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_176
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CACC
TTTTCTGTGTGCTGGC----------------------------------------------------------------
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-
>reverse_4092
--------------------------------------------------------------------------------
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-----------AACACAGTGACCCAAACGGA-------------------------------------------------
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--------------------------------------------------------------------------------
-
