>input_sequence_61290
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-------------------------------------------------------TGACCGCAGGAGAAGCTTTTTGTTC
GTCTCTTGATCGAGATCGTCTTTGATGGAGCGCAAGAACTCGTTCGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAG
CGACCCGGCCCCGCGGGCCGGCGGGAAGAAGCAGGGCGGCGT------------GGAGAAGACCAAGGCGGCCGCGGCCA
CGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCTTCCAGTGGATCAAGGGCAAGGTGCAGAAGAAGAAGCAGGGC
GCCGCCGGCGCCGGCGACGACGCGGCCGCCGGGTATTAGGCAGCCAGGCTCGGCTGATCCCTGGAGGATGG-AATGGATG
GATGGAACGCCGATCGATCGATCGGCCGATCTGTTGGTTTCTTGCGTCGTTTAATTGGTTGTGTACATATAGTTTTTGCC
GTTCTTCGATTCAGGCTTTGCACCACCACGTAGTAGATCAGCGATCGTTTTAGATCTCTGCTTATTGATTGGTTCTTTCT
TCTTCCT-TGTGTCCTGTTCTCGATCGATCCGATGAAATTTGCTGCTGATTAGTTTCGTCCACTCACGCTCGCGAGCAGA
TGCCTGATTGGT--------------GCGTGATCTTCAGGTTTGCGGGCTGCCACCTCCGGCAAATTTCAGTTCAACGTT
TTTTTTGGTTTTGTTATCTGAATTCTGAGTAGATGCTGCAGAGCCATGTGATGGTGGAAAGGTCAGTATATGGGAGTTTG
CATCTAGTACAGTTGCATAGTTCCATTTCGTCCTTCACAGATGAAAT-GACCTCATTTTTCGTCCACTTCTGTTTCAACA
CAAAGATATTTAACACTGAGAAACTGATGTGGAAATTTCATTTCTGTGGGCAATTCAAACGGTACTGTATCAGCATAGTA
GCACGGTTTCAGCTTTACATAAACGTACTTGCTCTAAGATTTCAGAAATGGCTTGTCA----------------------
----------------------AGGACAAAGTACCAAGCTCCGTAGAGCTGCAGACATTT--------------------
-------------TTAGAGATGGTGGGATTCAGAAGAAATGTCTAAAATAGTTGCATGCTTGTCCCTCTATATGGAACAT
TACTCGAAAGTTCAACTCAGAAGAATAAACCCAGTGACCATTC-------------------------------------
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>chr6A_1_TraesCS6A01G310400
TTGGGTGGTTGAGCAAGGAGTGCACAATGAATATAACACGAAAATATATGTCACAGTGAATGTAGTGAAGCAAATCTGGT
GTTATAGATGTTGGTATATTTTTATATTGACTTTATCAAGCTTGATTAGGTTTGAGTTAGGACAATATTAGAACTTCAAG
TCTGCAATTACTTTGGAATGGAGGGAGTAGCCCTGAATGATTCGTATCAATTAAGCTCTCTTTTTTATGGAATATCAATT
AAGGTCTTGGTTCAGCTAAAATAAATAAATAAAGCTCTTGATTTGCAATAAGAAAAAAAGAGCAAGAAGGGAGATCCTGT
CCAGAAGACGACCGGCACTCCTAGATGCTCACTGGTCGATGAACCTTAAACTCCTTGGATAACTTGGTCAACCCGATCTC
CTCCCAAAAAAACTAATCCCGCGACTCCAAATGGGCCAATTCGAAGC----TTAATTCTAAACGCCACGACAGGCACTTG
CTGCCGTGACAAGCCAAACAAGCAAGCAAGCCTCTCTTGAACGGATCAAATCAGGCGACCGGTTCATCCGCCCGTCCGCT
AAAACAAAGGGGAGGTCACGGTCTCACGACATCGGTCTTGCACGCACGCACGCGACCCGGCTGTAATTTCGTCCGACAGT
AACAATAACCAACATTTCAATCAGTTAAA---------------AAAACATTTCATTCAGCAGAACCAACATTTCAA---
-----------------------------------------------------------TCTCCGCGGCTGGAAGCTTCG
GGCTCGCAGCCCGGGCCGTATGGATGGACGTGGACCGCAGCCCCCGTCGTGAGCGACGCCGGTCAAAACTGGCATGCA--
-------GCGCCGCGGGAAGGAGAGCCAACCAAGCAGCCAGCCAGCGAGACCACCGCGTCCCGGTCCCGATCCCGGACGT
ATCCGGCCATGACTACGCGTACGTTTCCTCCCACGCGTGCCTTCTGGAAGGGA-----CGATCCCGTCCCGTTGATTGGT
TGCCCGAAGCGGGGCCGCGCATGCCCCTATAAAGCCCCGCCATTCTCGCCCCGACTGACCGCAGGAGAAGCTTTTTGTTC
GTCTCTTGATCGAGATCGTCTTTGATGGAGCGCAAGAACTCGTTCGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAG
CGACCCGGCCCCGCGGGCCGGCGGGAAGAAGCAGGGCGGCGT------------GGAGAAGACCAAGGCGGCCGCGGCCA
CGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCTTCCAGTGGATCAAGGGCAAGGTGCAGAAGAAGAAGCAGGGC
GCCGCCGGCGCCGGCGACGACGCGGCCGCCGGGTATTAGGCAGCCAGGCTCGGCTGATCCCTGGAGGATGG-AATGGATG
GATGGAACGCCGATCGATCGATCGGCCGATCTGTTGGTTTCTTGCGTCGTTTAATTGGTTGTGTACATATAGTTTTTGCC
GTTCTTCGATTCAGGCTTTGCACCACCACGTAGTAGATCAGCGATCGTTTTAGATCTCTGCTTATTGATTGGTTCTTTCT
TCTTCCT-TGTGTCCTGTTCTCGATCGATCCGATGAAATTTGCTGCTGATTAGTTTCGTCCACTCACGCTCGCGAGCAGA
TGCCTGATTGGT--------------GCGTGATCTTCAGGTTTGCGGGCTGCCACCTCCGGCAAATTTCAGTTCAACGTT
TTTTTTGGTTTTGTTATCTGAATTCTGAGTAGATGCTGCAGAGCCATGTGATGGTGGAAAGGTCAGTATATGGGAGTTTG
CATCTAGTACAGTTGCATAGTTCCATTTCGTCCTTCACAGATGAAAT-GACCTCATTTTTCGTCCACTTCTGTTTCAACA
CAAAGATATTTAACACTGAGAAACTGATGTGGAAATTTCATTTCTGTGGGCAATTCAAACGGTACTGTATCAGCATAGTA
GCACGGTTTCAGCTTTACATAAACGTACTTGCTCTAAGATTTCAGAAATGGCTTGTCA----------------------
----------------------AGGACAAAGTACCAAGCTCCGTAGAGCTGCAGACATTT--------------------
-------------TTAGAGATGGTGGGATTCAGAAGAAATGTCTAAAATAGTTGCATGCTTGTCCCTCTATATGGAACAT
TACTCGAAAGTTCAACTCAGAAGAATAAACCCAGTGACCATTCAACTACTGAGATGGTGAACGTC----AGTGAGTCTGT
GAGTGCAATCCGAACGGTAAAGGATTTAGAATGCATGTGCACTAGATAACAAAGATGCTAAAAGCACTTGATGCTCATAG
AAAGCCCATATGAGCAACCAATTTAATTAAAGTTTAAAGAGAAACGTTTTGTATGATAATGCTTGTAGAGTCACCCAATT
TTTCACTTTGGTACAACTACCTATTTCTGTCATCTTCAGTCGTGTACCAATTCATTTATATAGTACCCAATCATGTAAGC
AGTTCATGTCACACACGAGGTAAGCAAAACAGGACAACATATGCACACTGACTAACCATCCTCTAGGCTCTAGCAGTCCA
GCTGCTTGCCGATGTGGAGTGCATCAA-CTCCTATTTCGCTGGAAGAACATTGGCAAGGACACGATTTCACCTAAACGGC
GTTGTTGACATGATGGATTCGTGACTAACAAAGTGCAAACCAGATTAGTTATGAGCCATCGTCATCTGCCCATCTGATAG
TCAAGTCACAGTGCATTATCCCCTGCTGCATGTATCTTTTCAGTTACTC----TCCACACCAGAGCTTTACACATCCTGT
GACATTCTTGCAAAGTGCATCCAAGTTCAGTCGAGAAGAAAAATACATAATTCAGAAGCTCAATATTATTTATTCTGCGG
GAAGTGGCAAGTTGTATAGC---ACCAAGATCACATTGCAGTGCTGAAGGCCACTGAACTGAAGGGGGAAGAAACATTAC
ACATACAGTAGCACCTTACT-CCAAGCCTAGTGGTTGAC---ATACAAACTGCAGAGCTAATGGCTTTGGGCAGGCCATG
ACTGCACGCACGCGAGCATACAGCAAAGGGAACACCTC-----CCGCTTATTTCTGATGGTACCTCCCCTGCTCGACCCG
CTGCTTGAACTTGTCCTTCTCGTCGTCCGACTCGCCGAGCACCGCTTCCTTGGGTCTCCTGCACCGTCTCCTTTGCGCCC
TCCGCGACGTCGTCGGTCTTCTCC
>chr6B_233
TATCACTA------------------------------------------------------------------------
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AAGTTCTTGGTTCAACTGAAAAAAATAAACAAAGCTTTTGGTTCACAA-AAGAAAGAAAAAACAAGAAGGGAGATCCTGC
CCAGAAGATGACCGGCACTCCTAGATGCTCACTGGTTGATGAACCGTAAACTCCTTCGATAACTTGGTCAAGCCAATCTC
CTCCC-AAAAAAGTAATCCCACGACTCCAAATGGGCCAATTCGAAGC----TTATAATTATAA---ACGCCACGCACTTG
CTGCGGTTTAACTCCGGGA---CAAGCAAGCCTCTCTTGAACAGATCAAATCAGGCGACCCGTTCACCGGCCCGTCCGCT
GAAACAAAAGGGCAGGT-CACTCTCACGACACCGGTCTTGCACGCACGCACGCGACCAGGCTGTAATTTCGTCCGGCAGT
ACTAATAACCAACACATTTTTTGGTTGTTTGAGACAAAATAACCAACACATTTCATTCAGCACCTGTGACCGCGCACTGT
TT--GACCGACACGCGGGCCACAAGCCCACAATGATCGGCGCAGGCCCACCGGTCGGCGTCTCCGCGGCTGGAAGCTTCG
GACTCGCAGCCA-GGCCGTATGTATGGACGTGGACCGCAGCCCCCGTCGTGAGTGACGCCGGTCAAAACTGGCATGCAGC
TGCGTCCGCGCCGCGGGAAGGAGAACCAACCAAGCAGCCAA----CGAGACCACCGCGTCCCGGTCC------AAGACGT
ATCCGGCCTC--CTCCGCGTTCGTTTCCTCCCACGCGTGTCTTCTGGAAGGACCATCCCGATCCCCTCCCGTTGATTGGT
TGCCCGAAGCGGGGCCGCGCATGCCCCTATAAAACCCCGCCATTCTCGCCCTGACTGACCGCAGGAGAAGCTTT-TGTTC
GTCTCTTGATTGAGATCGTTCTTGATGGAGCGCAAGAACTCGTTTGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAG
CGACCCGGCCCCGCGGGCCGGCGGCAAGAAGCAGGGCGGCGT------------GGAGAAGACCAAGGCGGCCGCGGCCA
CGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCTTCCAGTGGATCAAGGGCAAGGTGCAGAAGAAGAAGCAGGGC
GGCGCCG---CCGGCGACGACGCGACTGCCGGGTATTGATTAGCCAGGCCCCGTTCCCGGCGGGCGGATGGAAATGGATG
CATGGATGTCCGGTCGATTGACTGGGCGATCTCTTGTTTCCT---GTCGTTTAAATGGTTCTGTACATACAGGTTTGCCG
----TTTGATTCAGGGTTGACACCACCACGTAGATCAT---CTAGCG-TTCAGATCTCTGCTTATTGATTGGTTCTTTGT
TCTTCCTCT-TGTCCTGTTCTCGATTGATCCGATGAAATTTGCCGCTGATTGG-TTCGTTCACTGACGCTCGCCGGCAGT
TGCCTTTGTTTGTTCGGGAACGCGGCGCGTGATCCTCAGATTTGCCGACTGTCACCTCCGGCAAATTTCGGTTCA-----
-------GTTTCGTTATCTGAATTCTGAGTACAGACTACAAAGTCTAGTGGAATGGTCA----CAGTATATGGGAGTTTG
CATCTAGTACAGTTGCATAGTTGCATTTCGTCCTTCACAGATGAAAT-GCACTCATTTTTCATCTACTTCTGTTTCAACA
CAAAGATAATTAACACTGAGAAAGTGATGTGGAACTTTCAATTCTGTGGGCAATTCAAACGGCACTGTATCAGCATAGTA
GCACTGTTTCAGCTTTATATAAACGTACTTGCTCTAAGATTTCAGAAATGGCATGTCAAGGACAAAGTATCCTTGCTCTG
AGATTTCAGAAATGGCATGTCAAGGACAAAGTATCAACCTCCGTAGAGTTGCAGACATTTGTTTTTTTTTTTAAATTTTA
GTTGCAGACATTGTTAGAGATGGTTGGATTTAGAAGAAATGTCTAAAATAGTTGCATACTTG-CCCTCTGTATGGAGCAT
TACTCAAAAGTTCAACTCAGAAGAATAAACTCAGTGGCCATTCAACTACTGAGATGGTGAAGGTC----AGTG-------
-----CAATCCGAACGGTAAAGGATTTAGAATGCATATGCGCTAGATAACAAAGATGCTAAAAGCACTTGATGCTCACAG
AAAGCCCATAGAAGCAACCAATTTAATTAAAGTTTAAAGAGAAAAGTTTTCTATGATAATGCTTGTAGAGTCACCCAATT
TTTCACTT-GGTACAACTACCTAATTCTGTCATCTTCAGTCGTGAACCAATTCACTTT--TAGTACCCAATCATGTAATC
AGTTCATGTCACACACGAGATAAGCAGAACAGGACAACATATACACACTGACTAACCATC-------CTCTAGCAGTCCA
GCTGCTTGCTGATGTGGAGTTCATCAA-CTCTTATTTCGCTGGAAGAACATTGGCAAAGACACGGTTTCACCTAAATGAC
GTCGTTGACAGGATGGATTCCTGACTAACAAAGTGCAAAGCAGATCAATTATGAGCCATTGGCCCATTGCCATCTGATAG
TC-AGTCACAGGGCATTATCCCTTGCTGCATGTATCTTTTCAGTTACCC----TCTATTCCAGAGCTTTACGCATCCAGT
GACATTCTTGCAAAGTGCATCCAAGTTCAGTCGAGGAGAAAAATA----ATTCAGAAGCC---TATTATTTATTCTGCGG
GTAGTGGCAACTTGTATAGTAGTACCAAGATCAGATTGTAGTGCTGAAGGCCACTGAACTGAAGGGGGGAGAAACATTAC
ACATACAGTAGCACCTAGATACCAAGCCTAGTGGTTGAC---ATACAAACTGCAGAGCTAATGAC-TTGA-CAGGCCATG
ACTGCACGCACTCGAGCATACAAC-AAGGGAACACCTC-----CCACTTATTTCTGGTCGTACCTCCCCTGCTCGACCCG
CTGCTTGAACTTCTCCTTCTCGTCGTCGGACTCGCCGAGCACCGCTTCCTTGG-TCTCCTGCACCGTCTCCTTTGCGCCC
TCGGCGACGTCGTCGGTCTTCTCC
>chr6D_406
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-----AAAAAAACTAATCCCACGGCTCCAAATGGGCCAATTCGAAGCTTAATTAATTATAAACGCCACGACAGGCACTTG
CTGCGGTTTTACTCCGAGA---CAAGCCAAGCAAGCAAGCCTCCTTG---------------------------------
--AACAAAGGGGAGGTCACAATCTCGCGACATCGGTCTTGCACGCACGC----GACCACGCTGTAATTTCGTCCGACAGC
ACTAATAACCAAC------------------------------------ATTTCATTCGGCAGAACCAGCGGAACTCACC
TGTAGACCGACACGCGGGCCACGACGATCTC--------CGCAGGCCCACCGGTCGGCGTCTCCACGTCTGGAAGCTTCG
GACACGCAGCCCAGGTCGCATGGAT------GGACCGCAGCCCCCGTCGTGAGTGACGCCGGTCAAAGCTGGCATGCA--
-------GCGCCGCGGGAAGGAGAACCAACCAAGCAGCCAA----CGAAACCACCGCGTCCCGTTCC------CGGACGT
ATCCGGACAC--CTCCGCGTACGTTTCCTCCCACGCGTGTCTTCTGGAAGATCGCCTC---------CCCGTTGATTGGT
TGCCCGAAGCGGAGCCGCGCATGCCGCTATAAAACCCCGCCATTCTCGCCCCGACTGACCGCAGGAGAAGCTTT-TGTTC
GTCTCTTGATTGAGATCGTTCTTGATGGAGCGCAAGAACTCGTTCGGCTCGTCGTGGGCGGACCAGTGGGACTACGGCAG
CGACCCGGCCCCGCGGGCCGGCGGCAAGAAGCAGGGCGGCGTCGGCGGCGGCGTGGAGAAGACCAAGGCGGCCGCGGCCA
CGGGGCTGAAGAAGGTGAAGGAGGGCACCGCGCACGGCTTCCAGTGGATCAAGGGCAAGGTCCAGAAGAAGAAGCAGGGC
GCCACCGCCGCCGGCGACGACGTGGCCGCCGGGTATTAGGCAGCCAGGCCCGGCTGATCCCTGGAGGATGG-AA------
-------CGCCGATCGATCGATTGGCCGATCTGTTGGTTTCTTGCGTCCTTCAATTGGTTGTGTACATATAGTTTTAACG
----TCTGATTCAGGGTTGGCACCGCCATGTAGACCAT---CGATCGTTTTAGATCTCTACTTATTGATTGATTCTTTCT
TCTTTCTTTGTGTCCTGTTCTCGATTGATCCGATGAA-TTTGCTGCTGATTAG-TTCGTCCACTGACGCTCACGAGCAGA
TGCCTGATTGGT--------------GCGTGATCTTCAGGTTTGCGGGCTGCCACCTCCGGCAAATTTCAGTTCAACGTT
TTTTT-GGTTTTGTTATCTGAATTCTGAGTAGATACTGCAGAGTCATGTGATGGTGGAAAGGTCAGTATATGGGAGTTTG
CACGTAGTACAGTTGCATAGTTCCATTTCGTCCTTCACAGATGAAACGGACCTCACTTTTCGTCTAATTCTGTTTCAACA
CAAAGATAATTAACACTGAGAAAGTGATGTGGATATTTCAGTTCTGCGGGCAATTCAAACGGTACTGTATCAGCATAGTA
GCACGGTTTCAGCTTTACATAAACGTACTTGCTCTAAGATTTCAGAAATGGCTTGTCA----------------------
----------------------AGGACAAAGTACCAAGCTCCGTAGAGTTGCAGACATTG--------------------
-------------TTAGAGATGGTTGGATTCAGAAGAAATGTCTAGAATAGTTGCATAGTTG-CCCTCTATATGGAGCAT
TACTCAAAAGTTCAACTCAGAAGAATAAACTCGGTGACCATTCAACTACTGAAATGGTGAACGTCAGTGAGTG-------
-----CAATCCTAACGGTAAAGGATTTAGAATGCATGTGCACTAGATAACAAAGATGCTAAAAGCACTTGATGCTCATAG
AAAGCCCATAGGAGCAACCAATTTAATAAAAGTTTAAAGAGAAAAGTTTTGTATGATAATGCTTGTAGAGTCACCCAATT
TTTCACTT-GGTACAAGAACCTAATTCTGTCATCTTCAGTCATGTACAAACTCGTTTT--TAGTAGCCAATCATGTAATC
AGTTCATGTCACACACGAGGTAAGCAAAACAGGACAACATATGCACACCGACTAACCATC-------CTCTAGCCGTCCA
GCTGCTTGCTGATGTGGAGTTCATCAAACTCTTATTTCGCCGGAAGAAAATTGCCAAAGACACGGTTTCACCTAAATAAC
GTTGTTGACATGATGGATTCGTGACTAACAAAGTGCAAAGCAGATCAATTATGA--------CCCATTGCCATCTGATAG
T-AAGTCACAGGGCATTATCCCTTGCTGCATGTATCTTTTCAGTCAGTATCATTCTACACCAGATCTTTACACATCCAGT
GACATTCTTGTAAAGTGCATCCAAGTTAGGTAGAGAAGAAAAATA----ATTCAGAGGCTCAGCATTATTTATTCTGCGG
GAAGTGGCAAGTTGTATAGC---ACCAAGATCACATTGTAGTACTGAAGGCCACTGAACTGAAGGGGGAAGAAACATTAC
ACA-----TAGCACCTAGATACCAAACCTAGTGGTTGACGACATACAAACTGCAGAGCTAACGACCTCGA-CAGGCCATG
TCTGTCTGCGTGCAAGTATAGAGGCAGTGCAGCGGAGCAGCCGCCACTTATTTCTGATGGTACCTCCCCTGCTCGACCCT
CTGCTTGAACTTCTCCTTCTCGTCGTCCGACTCGCCGAGCACCGCTTCCTTGG-TCTCCTGCACCGTCTCCTTTGCGCCC
TCGGCGACGTCGTCGGTCTTCTCC
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---S----------S--S---S-------S------S---S--SS---S------S---S-S-----------------S
--------S---------------------------S--------S----------S--------------S--S-----
--------------------S------------------------------------S----------------------
----S--SSS-SS--S-SSSSS--------------------S-----------------S-----S-S-----------
S------------------SS------------------------------------S----------------------
-SS-----------SS-SSS-SS---SSS-----------------S-----------------------SSSS--S---
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-S----------S----------------------------------------S--------------------------
------------------------S---------------SSSSS----------------------SSSSSS-------
---------SSS--S------------------------S-----------SS------------S--------------
---------------------------------S----------------------------------------S-----
----------S--------SS-----------------------------------------------------------
------------------------S-------------------------------------------------------
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-------S-----------------------------------------S------------------------------
S-----S---------------S-----------------------------------------------------SS-S
SSSS--S--------S--S--------------SSS--SSS---------------------------------------
-------------------------S---------------------------S----------S---------------
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-----S----------------------------S--------S------------------------------------
----------------------------------------------------------------S---------------
--------S--------------S----------------S---------------------------------------
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------------------------------------------------S-------------------------------
------------------------S--------------------------------S----S-------------S---
-----S------------------------S------------------------------------------SSSSSSS
SSSSS---------------------------------------------------------------------------
----------S---------------------------------S-----------------------------------
--------S--------------S---------------------------------SSS------------------S-
------------------------------------------------------------SSSSSSS-------------
---------S----------S----------S-------------------------S------S-----------S-S-
---------------------------------------S-----S-S-----------S-S-SSS-SS-----------
-----------S----------S--------------------------------S---------------------S--
---------------------------------------------SSSS-------------S-----------------
--------------------------------------S-----------------------------------------
----------------SSS--------------------------------------------S-S---SS---------
------------------------S--------------------S----------------------------------
------------S----------------------------------------S--------------------------
--S---------------------
>forward_547
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-----------------------------------------------AAATCAGGCGACCGGTTCAT-------------
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>reverse_1527
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------CGATTCAGGCTTTGCACCAC------------------------------------------------------
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>forward_581
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-AAACAAAGGGGAGGTCACGG-----------------------------------------------------------
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>reverse_2717
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----------------------------------------------------------------------------CGGC
GTTGTTGACATGATGG----------------------------------------------------------------
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