>input_sequence_61259
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-------------------------------------------------------------------ACATAT-AGTCGT
CCCCGCAGGCAGCG------CTCGATCGACCCCAGCCAGAGCCC------AGAGCAGCAGCTACTAGCC--AGTGAGCAT
GGCGTCCAACGCCGCACCCGACGACAACGAGGTGGCGCACGACTACGGC---CTCGTCCGTGTCTACAAGAGCGGCCGCG
TCGAGCGGCCCCTGGTGGCTCCGCCCGCGGCGGCCGGCCTCGATCCCGTCACCGGCGTCGAGTCCAAGGACGTCCAGCTC
GGCGA---CTACTCCGCCCGCCTCTACCTGCCCCCG---GCCGCGTCCGCGGCCGCAGA---CAAGCTCCCTGTCATCGT
CTACGTCCACGGGGGCGGCTTCGTGGCCGAGTCCGTCGCGTCCCCCAACGGCCACCGCTTCCTCAACAGCCTCACCGCCG
CCTGCCCTGCCCTCGCCGTCTCCGTCGAGTACCGCCTCGCCCCGGAGCACCCGCTCCCTGCGGCGTACGAGGACTGCGTC
GCC-GCCCTCGGGTGGGTGCTCTCGGCCGCCGACCCGTGGGTCGCCGAGCACGGCGACCTGGGCCGCGTCTTCGTGGCCG
GGGACAGCGCCGGGGCCAACGCCTGCCACCACCTCGTCATCCAGCCGGACGCCGTGC------------GCCTCAAGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGGGCTCCGAGGCCGTCGGCGAGGAGACGCGCAACCCCGCGTGGCGCGCCATGGG
CGG-------GCGGCTGTGGGAGTTCGCGTGCCCCGGCTCGAC---TGGCATCGACGACGCGCGGATGAACCCGATGGCG
CCCGGCGCACCTGGGCTGGAAACACTTGCGTGCGAGAGGGTCATGGTGTGCGTCGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGTCCGTGGCCGCGGCGAGGGGCGGCGAGGGGCAGGGGGTTGAGCTGCTGGAGACGATGGGGG
AGGGGCACGTCTTCCACCTCTTCAAGCCCGACTGCGACAAAGCCAAGGAGATGTTCGACAGGATCGTCGCCTTCGTTAAC
GCG---CCGTGATGCTCGTGTGGATGTGCCCA--CTTATTATCAGGCCGGCAGCTTTGTGTGTCGCGCGGGCGCTACCTA
CTCAA---------------------------------------------------------------------------
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------------------------------------------------
>chr5B_1_TraesCS5B01G059800
GCTGCGGATTCCAGGGCGTTGTTATCAATTGCATGCACGCATTTATATCCATCCAGCTTTTTCCATACGGCTCATGCAAC
CAAAGGGCAAATTAGTCCAAAATATTTGAACCGAGGCCCTCCTTGGTATCCGGGCTTGCACTTAGACGCACAGTAAAAAG
GACCAGAGGGAGTACTCTAGCAATCAGTTGCTGTTGTAATCGTACTCCCTTCTCTGAAAATACTTGTTGAAGAAATAGAT
GTATTTAAACTTATTTTAGTTATAGATATATTCAATTTTATTCATCTCTCCAACAAGTATTCAGAGACAGAGGAAGTATG
TTTTAGAGGGTGCTTGGATACGTTTTAGTCACATGACTAAAAGTAGTGGGACTAAAACTTGCTAGCCTCACCCATGCTTG
GATCCAAATACTAAAGAGACTAAAATCAAGTTATTGAGCATTTATTATCCTCCAAATCCTCCAATCCAGAACTCGCATGT
GTTAAAGGAGAGGAATTAAATGAGCAGAGAGAGGGCTAATACATATTTTAGTAGGTTTCCTATGACTAAAAAATTTTAGC
CTCAAGACTAGTTCTAGCCTCTCTTTAGTCATGGGTGCTTGGAACTTTAGCCTCTAAAAGAGACTATTTTTAGTCAAACT
AAAAATAGTCCCTGGATCCCAGCACCCTCTTAGGCAGCTCCGTAGCAGACATGTCACGCAACCGGCCAGCCCGTGCATGT
ACGACAGCTCGGTGATCAAAGGAAGAATGCAACGACATC----CGAGAACTTAG-----------------------TAA
GACATAGAAGGATCTGTCTTCGGAGGCAAGTAATCGTGGATTCAGAACTTCATTTGTAAGCAACACACCGAGTAGGCACT
AAGAGTTCAAATCCAAAAGTTCTGCCGGCCATCTAGAAGCGCAGAACTCGCCATCAGCCGCGCGAATGCTGCCGATGCGC
TGTTGGAGGCGTGGAGACGCCGAGAAATATACCACGTCGCCATCAGTTGCTAGTCGGCACAACAAACACATAT-AGTCGT
CCCCGCAGGCAGCG------CTCGATCGACCCCAGCCAGAGCCC------AGAGCAGCAGCTACTAGCC--AGTGAGCAT
GGCGTCCAACGCCGCACCCGACGACAACGAGGTGGCGCACGACTACGGC---CTCGTCCGTGTCTACAAGAGCGGCCGCG
TCGAGCGGCCCCTGGTGGCTCCGCCCGCGGCGGCCGGCCTCGATCCCGTCACCGGCGTCGAGTCCAAGGACGTCCAGCTC
GGCGA---CTACTCCGCCCGCCTCTACCTGCCCCCG---GCCGCGTCCGCGGCCGCAGA---CAAGCTCCCTGTCATCGT
CTACGTCCACGGGGGCGGCTTCGTGGCCGAGTCCGTCGCGTCCCCCAACGGCCACCGCTTCCTCAACAGCCTCACCGCCG
CCTGCCCTGCCCTCGCCGTCTCCGTCGAGTACCGCCTCGCCCCGGAGCACCCGCTCCCTGCGGCGTACGAGGACTGCGTC
GCC-GCCCTCGGGTGGGTGCTCTCGGCCGCCGACCCGTGGGTCGCCGAGCACGGCGACCTGGGCCGCGTCTTCGTGGCCG
GGGACAGCGCCGGGGCCAACGCCTGCCACCACCTCGTCATCCAGCCGGACGCCGTGC------------GCCTCAAGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGGGCTCCGAGGCCGTCGGCGAGGAGACGCGCAACCCCGCGTGGCGCGCCATGGG
CGG-------GCGGCTGTGGGAGTTCGCGTGCCCCGGCTCGAC---TGGCATCGACGACGCGCGGATGAACCCGATGGCG
CCCGGCGCACCTGGGCTGGAAACACTTGCGTGCGAGAGGGTCATGGTGTGCGTCGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGTCCGTGGCCGCGGCGAGGGGCGGCGAGGGGCAGGGGGTTGAGCTGCTGGAGACGATGGGGG
AGGGGCACGTCTTCCACCTCTTCAAGCCCGACTGCGACAAAGCCAAGGAGATGTTCGACAGGATCGTCGCCTTCGTTAAC
GCG---CCGTGATGCTCGTGTGGATGTGCCCA--CTTATTATCAGGCCGGCAGCTTTGTGTGTCGCGCGGGCGCTACCTA
CTCAAATAAATGGATTGCGAG----GATGAAATAAATTAAATTAGATAATTTTGTGGAGTGTCT---------TCGCGTG
CTCTCGCCTATTATGCTTTGGTTCACTAAAATCTTTCTGTTCATGATAATATGTTTCTCATTTATATAAAAAA-GTCA--
---TAGTACAAGTCACGTACAGATCGATCTAATAGAACTGAAAGAACTGCAGAACACTAGTCTTTACGT-TAAGAAAGAC
TA-CC---------AATTAGAATCAAAACCGAAGAAACCTTTAAGTTTGACACCAA-------CACCAGAC-CGTGGCGC
CACCACAGCAGCCAAAAAAAAAA----A---TGACAGATCACCACCTCAGCCAACCTCGACGCGGATCCATCACAGAT--
-------------CCTCTAAGGTGGCCGACCAAAGACGAAACCGTTACCGTCGAACGAATTAGACCAGGGCA---ACACA
TCAGACACGTCACTGAACTCCAGATATGACACCCCGCACAACTTAAGACATCGGATGAGGAAACCATACCTGTCATCCAC
GAACCATGAACCCAACAGACGATCTACCATTTTCCAGAT--GCCGCCGATGCAGACCAC-AATCTGCATCCGCTTTTAGA
CTACCTGCTAAGCTCCGCGCC--CGATGGAGCAAACGCTGTCGCAACAACGGAGTCCGAGGACACAAATCCACCATGTGG
ATATCGCCGT---CACACCATCCTTGTTTGAACAGATTGGTTTTCAAACCCATCCTCAACCATTGGACTAATCTCCTCGT
AGGGGAAGTTTCCGAAGAATCTTT-ATTCAGCGTCGTTC---TCGCCACCGCCTAAGCAAAGACGATGAACAATCTAAAA
AACTAGA-TTACG--AGGGCCTAA-AAATGATCCACACGTGTGGATCCGGTGACCCCCCTCACCATCAACGATCGAGGTT
GTCAGCAGAGGGGAGCTGTCGGAGAATGGCCGCGAA--GGA--ACTCTCCTGGCTGCGGCTAGCGAAATTGCTTTTCTTT
CTTTGGGTTGAAGAAAGAAAACTACCACGTAGTTAGGTCTTGCGAGGT
>chr5A_671
--------------------------------------------------------------------------------
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------------------------------TAGGCAGCTCCGTAACAGACATGCCACGCAGCCGGCCAGCCCGTGCATGT
ACGACAGCTCGGTGACCAAAGGAAGATGGGGAGAAGATGGCAACGAGAACTTAGAAAGAATGCAAATAAGAAAGGAATAA
GAAATAGAAGGATCTGTCTTCGGAGGCAAGTAATCCTCGACTCAGAACTTCAGATGTAAGTAACACACC-----------
--GAGTTCAAATCCAAAAGTTGTGCCGGCCATCTAGAAGCGGAGAACTCGCCGTCAGCCGCGCGAATGCTGCCGATGCGG
TGTTGGAGTCTTGGGGACGCCGAGAAATATACCACGTCGCCTTCAGTTGCTAGTCGGCACAACAAACACATAT-AGTCCT
CCTCACCGCG-GCG------CTCGATCGACCCCAGCCACAGCCC------AGAGCAGCAGCTACTAGCTGTAGTGAGCAT
GGCGTCCAACGCCGCACCCGACGACAACGAGGTGGCGCACGACTACGGC---CTCGTCCGCGTCTACAAGAGCGGCCGCG
TCGAGCGGCCCCTGGTGGCTCCGCCCGCGGCGGCCGGCCTCGACCCCGTCACCGGCGTCGAGTCCAAGGACGTCCAGCTC
GGCGA---CTACTCCGCCCGCCTCTACCTGCCCCCG---GCCGCGGCCATGGCCGCAGT---CAAGCTCCCTGTCATCGT
CTACGTCCACGGGGGCGGTTTCGTGGCCGAGTCCGTCGCGTCGCCCAACGGCCACCGCTTCCTCAACAGCCTCACCGCCG
CCTGCCCCGCCCGCGCTGTCTCCGTCGAGTACCGCCTCGCCCCGGAGCACCCGCTCCCTGCGGCGTACGAGGACTGCGTC
GCCCGCCCTCGGGTGGGTGCTCTCGGCCGCCGACCCGTGGGTCGCCGAGCACGGCGACCTGAGCCGCGTCTTCGTGGCCG
GGGACAGCGCCGGGGCCAACGCCTGCCACCACCTCCTCATCCAGCCGGACGCCGCGC------------GCCTCAAGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGTGCTCCGAGGCCGTCGGCGAGGAGACGCGCAACCCCGCGTGGCGCGCCATGGG
CGG-------GCGGCTGTGGGAGTTCGCGTGCCCCGGCTCGAC---TGGCATCGACGACGCGCGGATGAACCCGATGGCG
CCCGGCGCGCCGGGGCTGGAAACGCTCGCGTGCGAGAGGGTCATGGTGTGCGTGGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGGCCGTGGCCGCGGCGAGGGGCGGCCAGGGGCACGGGGTCGAGCTGCTGGAGACGATGGGGG
AGGGGCACGTCTTCCACCTCTTCAAGCCCGACTGCGACAAAGCCAAGGAGATGTTCCACAGGATCGTCGCCTTCGTTAAC
GCG---CCGTGATGCTCGTGTGGATGTGCCCCCGCTTATTATCAGGCCGGCTGCTATGTGTGTCGCGCGGGCGCCACCTA
CTCAAATAAATGGATTGCGAT----GATGAAATAAATTAAATTAGATAATTTTGTGGAGTGTCT---------TCGCGTG
CTCTCGCCTATTATGCTTTGGTTCACTAAAGTCTTTCCGTTCA--ATGATACGTTTCTCATTTATATCATAAAAATGCCA
TACTAGTACAAGTCACATACGCATCGATCTGATAAAACTGAAAAAACTGTAAAACATTAATCTTTACAT-TAAGAAAGAT
TAGCT---------AATTACAATCAAGACCGAAGAAACCTTTAAGCTTGACACCAA-------CACCAGCTTCGTGGCAC
CACCACAACAGCCAACAAAATAA----AAAGTAACGGATCACTTCCTTAGCCAACCTCGACACGGATCTATCACTGAT--
-------------CCTCTAAGGTGGACGACCAAAGACAAAACCGTTATCATTGAACGAATTAGGACGAGGCA---ACACA
CCAGGCACGTCATTGAACTCTAGATCTAGCGTCCCGCGCAACTTAA-ACATCGGAGGAGGAAACCATACCCGTCATCCAT
GAACCGACGAC----------CT---ACATTTTCCAGATGCGCCGCCGATACAGATCAC-AATCTGCATCCGCTTCTAGA
CTACCTCCCAAACTCCGCGTCGGCGCTAGAGCAAACACTGTCGCAACAACGGAGT-CGAGGACACAAGTCCACCACGAGG
ATATCGTCGT---CACGCCATCCGTGCTTGAACAAACTGGTTTTCAAACTCATCCTCAACTATTGGACTAATCGCCTCGT
CGGGGAAGGATCTGAAGAATTTTTTATTCAACGTCGTTC---TCACCACCGCCTAAGCAAAGACAATGAACAATCTAAAA
AAACTAGACTACG--AGGGCCTAA-AAATGATCCACACGTATGGATCCGGCAA-CCCCCTCACCAACGACGACCGAGGTT
GTCGGCAGAGGGGAGCCGTCGGAG--------------------------------------------------------
------------------------------------------------
>chr5D_671
TAGGCAGCTCCG--------------------------------------------------------------------
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--------------------------------------TACGTAACGGACATGCCGCGCAGCCGGCCAGCCCGTGCATGT
ACGACAGCTCGGTGATCAAAGGAAGATGGCAAATTCTCAGTCATCTGTCAACTTCACAAAGAGTGCA--------AATAA
GAAATAGAAGGATCTGTCTTCCGAGGCAAGTAATCGTCGATTCAGAACTTCAGACGTAAGTAACAACTAACAACACACCA
AGTAGTTCAAATCCAAAAGTTGTGCCGACCATCTAGAAGCGGCGAACTCGCATTCAGCCACGCGAATGCTG-CGATGCGG
TGTTGGAGTCTTGGAGACGCCGAGAAATATACCACGTCGCCATCAGTTGCTAGTCGGCACAACGACCACGTACAAGTAGT
CGTCACCGCA-GCGCTCTATCTCGATCGACCCCAGCCACAGCCAGATCCGAGAGCAGCAGCTACTAGCT--AGTGAGCAT
GGCGTCCAACACCGCACCCGACGACAACGAGGTGGCGCACGACTACGGC---CTCGTCCGCGTCTACAAGAGCGGCCGCG
TCGAGCGCCCCCTGGTGGCTCCGCCAGCGGCGGCCGGCCTCGATCCCGCCACCGGCGTCGAGTCCAAGGACGTCCAGCTC
GGCGA---CTACTCCGCCCGCCTCTACCTGCCCCCG---GCCGCGTCCACGGCCACAGA---CAAGTTCCCTGTCATCGT
CTACGTCCACGGGGGCGGCTTCGTGGCCGAGTCCGTCGCGTCCCCCAACGGCCACCGCTTCCTCAACAGCCTCACCGCCG
CCTGCCCTGCCCTCGCCGTCTCCGTCGAGTACCGCCTCGCCCCGGAGCACCCGCTCCCCGCGGCCTACGAGGACTGCGTC
GCT-GCCCTCACGTGGGTGCTCTCGGCCGCCGACCCGTGGGTCGCCGAGCACGGCGACCTGGGCCGCGTCTTCGTGGCCG
GGGACAGCGCCGGGGCCAACGCCTGCCACCACCTCGTCATTCAGCCGGGCGCCGTGC------------GCCTCAAGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGGGTTCCGAGGCCGTCGGCGAGGAGACGCGCAACCCCGCGTGGCGCGCCATGGG
CGG-------GCGGCTGTGGGAGTTCGCGTGCCCCGGCTCGAG---CGGCGTCGACGACGCGCGGATGAACCCGATGGCG
CCCGGCGCGCCGGGGCTGGAAACGCTCGCGTGCGAGAGGGTCATGGTGTGCGTCGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGGCCGTGGCCGCGGCGAGGGGCGGCGAGGGGCAGGGCGTCGAGCTGCTGGAGACGGAGGGGG
TGGGGCACGTCTTCCACCTCTTCAAGCCCGACTGCGACAAAGCCAAGGAGATGTTCGACAGGATAGTCGCCTTCGTTAAC
GCG---CCGTGATGCTCGTGTGGATGTG--CCCGCTTATTATCAGGCCGGCAGCTTTGTGTGTCGCGGGGGCGCCACCTA
CTGAAATAAATGGATTGCGATAAATGATGAAATAAATTTGGTTGGATAATTTTGCGGAGTGTCTTATCATACCTCGCGTG
CTCTCGCCTATTATGCTTTGGTTAAATTTT---TTCCTTTTCACGATAATACGTTTCTCATTTATATCATAAGCGTCG--
---TAGTACAAGTCACGTATACATCCACCTAATAAAACTGAAAAAACTGCAGAACACTAGTTTTTTAGGTAAAGGAAGAC
CAGCC---------AATTACAATCAAGACTGAAAAAACATCTAGGCTTGACACCAATGC---------------TGGCGC
CACCACAACAACCAACAAAAATA----AAAGTGACGTATCACCTCCTCAGCTGAGCTCGACGCGAATCCATCACTGAT--
-------------CCTCTAAGGTGGCTCACCAAAGACGAAACCATTATTGTTGAACGAATTAGACCGGGGC----ACACT
CCGGACACGTCATTAAACTCCAGATCTGGCACCCCGCA---AGTTAGTTGGAGGAGGAGGAAACCATACATGTCATCCGT
AAACCATGAACCCAACAAACGATCTACCATTTTCCAGAT--GCCGCCAATGCAGACCAC-AATCTGCACCCGCTTCTGGA
CTATCTCCCAAGCTCCGCGCCGGCGCTGGAGCAAACGATGTCGCACCAGCGGAGCCTGAGGACACAAGTCCACCACGAGG
ATATCGCCGT---CATGCCATCCTTACTTGAACAGACTGGTGTTCAAACCCATCCTTAACCATTGGACTAATCGCCTCGT
CGGGAAAGGATCTGAAGAATCTTT-ATTCAGTGTTGTTC---TCGCCACCACCTAAGCAAAGACGATGAACAATCTAAAA
AAACTAGACTACG--AGGGCCTAA-AAATGATTCACTCGTGTGGATCCGGCAACCCACCTCACCATCGATGACCGAGGTT
GTCTGCAGAGGGGAGCCGTCGGAGGACGGCCGCGAA--GGA--ACTCTCCTGGCTGCGGCTAGCTGAATCGCTTTTCTTT
CTTTGGGTTGAAGAAAAAAAACTACCACGTAGTTAGGTCTTGCGAGGT
>chr3B_1090
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-----------CCGCACCCGCCGCCGACGAGCTGCTGCACGAGTTCGGCCCGCTCCTCCGAGTCTACAAGAGCGGCCGCA
TCGAGCGCCCCCTAGTGCTCCCGCCCGTCGCGCCGGGGCCCGACCCCTCCACGGGTGTCCAGTCCAAGGACGTCGACCTC
GGCGC---CTACTCCGCCCGCCTCTACCTGCCCCCATCCGCCGCGGCCGGCACGGCGGC---GAAGCTCCCCGTCATCGT
CTACGTCCACGGCGGCGGCTTCGTGGCAGAGTCCGCGAAGTCCCCCAACTACCACCGCTTCCTCAACGACCTCACCTCCG
CCTGCCCGGCCCTCGGCGTCTCCCTCGACTACCGCCTCGCCCCGGAGCACCCGCTCCCGGCGGCCTACGACGACTGCCTC
GA-CGCCCTCCGCTGGGTGCTCTCCGCGGCCGACCCCTGGGTCGCGGCGCACGGCGACCTCGGCCGCGTCTTCGTGGCCG
GCGACAGCGCCGGCGCCAACATCTGCCACCACGTCGCCATCCAGCCGGGCGCCGCGC------------GCCTCGGGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGGGCTCCGAGGCCGTGGGGGAGGAAACAACCGACCCCGCGGCGCGCTCCCGGGG
CGC-------GGGGCTCTGGATGTTCGCGTGCCCCGGCACCAG---CGGCATGGACGACCCGCGGATGAACCCCATGGCG
CCCGGCGCGCCGGGGCTGGGGGCGCTGGCGTGCGAGAGGGTCATGGTGTGCACGGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGGCGCTGGCCGCCGCCGACA------------AGGGAGTGGAGCTGCTGGAGACGGACGGGG
AGGGCCACGTCTTCTACCTCTTCAAGCCCGACTGCGACAAGGCCAAGGAGATGCTCGACAGGATCGTCGCCTTCATTAAC
GCA---CCTTGATGCTC---------------------------------------------------------------
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>chr3D_1096
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-----------------CCGCCGACGACGAGCTGATGCACGAGTTCGGCCCGCTCCTCCGAGTCTACAAGAGCGGCCGCA
TCGAGCGCCCCCTCGTGCTCCCGCCCGTCGCACCAGGGCCCGACCCCTCCACCGGCGTCCAGTCCAAGGACGTCGACCTC
GGCGC---CTACTCCGCCCGCCTCTACCTGCCCCCATCCGCCGCGGCCGCCACGGCGGC---GAAGCTCCCCGTCATCGT
CTACGTCCACGGCGGCGGCTTCGTGGCCGAGTCGGCAAAGTCCCCCAACTACCACCGCTTCCTCAACGATCTGTCCTCCG
CCTGCCCGGCCCTCGGCGTCTCCCTCGACTACCGCCTCGCGCCGGAGCACCCGCTCCCGGCGGCCTACGACGACTGCCTC
GA-CGCGCTCCGCTGGGTGCTCTCCGCGGCCGACCCCTGGGTCGCGGCGCACGGCGACCTCGACCGCGTCTTCGTGGCCG
GCGACAGCGCCGGCGCCAACATCTGCCACCACGTCGCCATCCAGCCGGGCGCCGCGC------------GCCTCGGGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGGGCTCCGAGACCGTGGGGGAGGAGACACGCGACCCCGCGGCGCGCGCCCGGGG
CGC-------GGGGCTCTGGATGTTCGCGTGCCCGGGCACCAC---CGGCATGGACGACCCGCGGATGAACCCCATGGCG
CCCGGCGCGCCGGGGCTGGGGGCGCTGGCGTGCGAGCGGGTGATGGTGTGCACGGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGGCGCTGGCCGCCGCCGGCA------------AGGGAGTGGAAATGCTGGAGACGGACGGGG
AGGGCCACGTCTTCTACCTCTTCAAGCCCGACTGCGACAAGGCCAAGGAGATGCTCGACAGGATCGTGGCCTTCGTTAAC
GCGGCAGCTTGATGCTC---------------------------------------------------------------
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------------------------------------------------
>chr2D_1128
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----------------------------------------------------CTCCTCCTGGTCCACAGGAGCGGCAGGC
TCGAGCGGCCCCTCGTCATGCCGCCCGTCCCGCCCGGCCACGACGCCGCCACGGGCGTCGTGTCCAAGGACGTGTCGCTC
TCGCCCTTCTCCTTCGTGCGTCTCTACCTCCCGCCC---GAAACGGGCGCCGGCGCCGGCAAGAAGCTCCCCGTCCTCGT
GTACTTCCACGGCGGGGGGTTCGTGATCGGGTCGGCCGCGTCGGCCGCTTACCACCGCTGCCTCAACGACCTCACCGCGG
CCTGCGCCGCCGTCGCCGTCTCCGTCGACTACCGCCTCGCCCCGGAGCACCCGCTCCCCGCCGCGTACGAGGACTCCCTG
GCG-GCCCTCAAGTGGGTGCTCTCCGCCGCCGATCCGTGGCTCGCCGAGAGAGCCGACCTGTCCCGCATTTTCCTCGCGG
GAGACAGCGCCGGCGGCAACATCTGCCACCACCTCGCCATGCACCACGACTTGAGGGGCGCCGCGGGAAGGCTCAAGGGC
ATCGTCCTGATCCACCCGTGGTTCTGGGGCAAGGAGCCCATCGGCGAAGAGCCCCGG----CCGGGGCGCGCGGAGGGCG
TGGAGCAGAAGGGCCTGTGGGAGTTCGTGTGCCCCGACGCAGCGGACGGCGCGGACGACGCCCGGATGAACCCGACCGCG
GAGGGCGCGCCGGGGCTGGAGAACCTGGCGTGCGAGAAGCTCATGGTGTGCGTCGCCGAGGGGGACTTCCTGCGTTGGCG
CGGCAGGGCGTACGCCGATGCGGCGGCCCGGGCGAGGGGCCCCGAGCC---GGCGGTGGAGCTGTTCGAGTCGGAGGGGG
TCGGCCACGTGTTCTACCTGTACGAGCCTGCAACGGAGAAGGCCAGGGAGCTGCTGGAGAGGATCGTGGCGTTCGT----
--------------------------------------------------------------------------------
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------------------------------------------------
>chr3A_1509
GCCTGAC-------------------------------------------------------------------------
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------------------------------------------------GCACGGCGACCTCGCCCGCGTCTTCGTGGCGG
GCGACAGCGCCGGGGCCAACATCTGCCACCACGTCGCCATCCAGCCGGGCGCCGCGC------------GGCTCGGGGGC
GCGGTGCTGATCCACCCCTGGTTCTGGGGCTCCGAGGCCGTGGGGGAGGAGACGACCGACCCCGCGGCGCGCGCCCGGGG
CGC-------GGGGCTCTGGATGTTCGCGTGCCCGGCCACCAC---CGGCATGGACGACCCGCGGATGAACCCCATGGCG
CCCGGCGCGCCGGGGCTGGGGGCGCTGGCGTGCGAGCGGGTGATGGTGTGCACGGCGGAGGGCGACTTCCTCAGGTGGCG
CGGCCGCGCGTACGCGGAGGCGCTGGCCGCCGCCGGCA------------AGGGGGTGGAGCTGCTGGAGACGGACGGGG
AGGGCCATGTCTTCTACCTCTTCAAGCCCGACTGCGACAAGGCCAAGGAGATGCTCGACAGGATCGTCGCCTTCGTTAAC
GCAGCACCTTGATGCTC---------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>chr4A_2176
ATCTTTTT------------------------------------------------------------------------
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-------------------------------------TTTGCATGGTAATATGTGTCTCATTTATATCATAAGGATCA--
---TAGTACAAGCCACGTACAAACCGACCTAGTAAAACTGAAAAGACAGCAAAACGATAGCCTTTGCAC-AAAGGAACAA
CAGCCAAGAAGTAAAATTACAATCAAGACCGAAGAAACCTTTGAACTTGACACCAATGCCCGCCATAGGCC-TCCTGGAC
CACCATAGCAGCCACCAAAGGAACC-AA---TGACGGATCACCTTCACACCCGAGCTCGAAGCGGCTCCATCGCTGATAT
GCAGCTTTGCGGACCTCCAAGGTGGTTCACCAAAAGTGAAACCATTACCGTTGAACGAATCAGACCGGAGCA---ACACC
CCGGACACGCCATCGAACTCCAGATCTGGCACCCCCACACGACTAAGACGCCGGAGGAGAAGATCATACCTGCCAACCAC
GAACCACGAACCCAGCACACGATCCACCATCTTCCAGAT--GACGCCGATGCAGACCAC-AATCTGCATCCGCTTCTGGA
CTACCTCCCAAGCTCCACGCCGGCGCTGGAGCAAACGCCGTCGCAACGGCGGAGCCCGAGGACACAAGTCCATCACGAGG
ATGACGCCGCCGCCACGCCATCCTTGTTTGAACAGACTGATTTCCAAATCCGTCCCCAACCACAGGACCGATCGCCTCAT
CGGAGTAGGATATGAACAAACTTT-ATTCAGCGCCGTCA---TCGCCGTCGCCGAAGCAAAAACGATGAACAACCTAAAA
ACCTAAA-CTACG--AGAACCTAAAAAACGATCCACACGCGTGGATCCGGCGACCCCCCTCACCACCAACGACCAAAGTC
GCTGGCGGAGGGGAGCCGCCGGAG--------------------------------------------------------
------------------------------------------------
>chr7B_2303
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--------------AATTACAATCAAGACCGAAGAAACCTTTGAACTTGACACCAACGCCCGTCACCTGCC-TTTGGAAC
CACCATAGCAGCCACCAAAGGAAAAAAA---TGACGAATCACCTTCACACCCGAGCTCGAAGCGGCTCCATCGCTGATAT
GCAGTTTTGCGGACCTCCAAGGTGGCTCACCAAAAGCGAAACCATTACCGTTGAACGAATCAGACCGGGGCA---ACACC
CCGGACACGCCATCGAACTCTAGATCTGGCACCCCCACACGACTAAGACGCCGGAGGAGAAAACCACACCTGCCATCCAC
GAACCACGAACCCATCACACGATCCACCATCTTCCAGAT--GCCGCCGATGCAGACCACAAATCTGCAGCCGCTCCTGGA
CTACCTCCCAAGCTCCGCGCCGGCGCTGGAGCAAACGCCGTCGCAACGGTGGAGCCCGAGGGCACAAGTCCACCACGAGG
ATGTCGCCGCCGCCACGCCATCCTTGCTTGAACAGACTGATTTCCAAATCCATCCCCAATCATACGACTGATTGCCTCGT
CGGAGTAGGATCTGAAGAAACTTT-ATTCAGCACCGCCA---TCGCCACCGCCGAAGCAAAGACGATGAACAACCTAAAA
ATCTAAA-CTACT--AGA--GTAAAAACCGATCCACACGCGTGGATCCGGCGACCTCCCTCACCACCGACGACCAAGGCC
GCCGGCGGAGGGGATCCGCCGGAG--------------------------------------------------------
------------------------------------------------
>chr5B_2432
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-------------CCTCCAAGGTGGCTCACCAAAAGCGAAACCATTACCGTTAAACGAATCAGACCGGGGCA---ACACC
CCGGACACGCCATCGAACTCTAGATCTGGCACCCCCACACGACTAAGACGCCGGAGGAGAAAACCACACCTGCCATCCAC
GAACCACGAACCCAGCACACGATCCACCATCTTCCAGAT--GCCGCCGATGCAGACCAC-AATCTGCATCCGCTCCTGGA
CTACCTTCCAAGCTCCGCGCCGGTGCTGGAGCAAACGCTGTCGCAACGGCGGAGCTGGAGGACACAGGTCCACCACGAGG
ATGTCGCCGCCGCCACGTCATCCTTGCTTGAACAGACTGATTTTCAAATCCATCCCCAACCATAAGACCGATCGCCTCGT
CGGAGTAGGATCTAAAGAAACTTT-ATTCAGCGCCGCCA---TCGCCGCCGCCGAAGCAAAAACGATGAACAACCTAAAA
AAATAAA-CTACT--AGA--GTAAACACCAATCCACACGCGTGGATCCGTCGACCCCCCTCACCACCGACGACCGAGGCC
GCCAGCGGAGGGGAGCCGCCGGAGTGCGGC---GGCGTGGA--AAACTCCTGGC--------------------------
------------------------------------------------
>chr2B_2432
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-------------CCTCTAAGGTGGCACACCAAAAGTGAAGCCCTTACCGTTGAACGAATCAGACCGGGCCGGGCAAACC
CCGGACACGTCATCGAACTCCAGATTTGGCACCCCACCGCGACTAAGACGTCGCGGAAGGAAACCATACCTGCCATCCAC
GAACCACGAACCCAGCACATGTT---CCGTCTTCCAGAT--GTCGTCGATGCAGACCAC-AATCTGCATCCGCTTCTGGA
CTACCTCCCAAGCTCCGCGCCGACGCTGGAGCAAACGCCGTCGCAACGGCGGAGCCCGAGGACATAGGTCCACCACGAGG
ATGCCGCCACCGCCACGACATCCTTATTTGAACAGACTAGTTTTCAAATCCATCCCCAACCATAGGACCAATGGCCTTGT
CAAGGAAGGATCCGAAGAATCTTT-ATTCAGTGTTGTCATCGTCGCCGCCGCCGAAACAAAGACGATGAACAACCTAAAA
ATCTAAAACTACG--AGGGAGT-AAAAATAATCCACACGCGTGGATCCGGCGACCCCCCTCACCACCGACGACCGAGGTC
GCCGGCGGAGGGGAGCCGCCGGAG--------------------------------------------------------
------------------------------------------------
>chr6D_2432
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCTCCAAGGTGGCTCACCAAAAGTGAAGCCCTTGTCGTTGAACGAATTAGACTGGGGCA---ACACC
CCGGACACGCCATCGAACTCCAGATCTGGCACCCCACCACGACTAAGACGTCGAAGGAGGAAACCATACCAGCCATCCAT
GAACCACGAACCCAGCACACGTTCC---GTCTTTCAGAT--GTCGTCGATGCAGACCAC-AATCTGCATCCGCTCCTGGA
CTACTTTCCAAGCTCCACGCCAACGCTGGAGCAAACGCCATCGCAACGACGGAGCCCGAGGACACAGGTCCACCACGAGG
ATACCGCCGCCGCCACGCCATCCTTGCTTGAACAGACTAGTTTTCAAATCCATCCCGAACCATAGAACCGATGGCCTTGT
CAGGGAAGGATCCGAAGAATCTTT-ATTCAGCGTTGTCATCATCA---TCGCCGAAGCCAAGACGATGAACAGTCTAAAA
ACCTAG-ACTACG--AGAGAGT-AAAAACGATCCACACGTGTGGATCCGGTGACCCCCCTCATCACCGACGACCGAGGTC
GCCGGCGGAGGGGTGTCGCCGGAGAACGGCGCTGGAAGATTGGACTCTCCTGGCGGCGGCTAG-----------------
------------------------------------------------
>chr1B_2432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCTCCAAGGTGGCTCACCAAAAGTGAAGCCCTTACCATTGAACGAATCAGACCGGGGCA---ACACC
CCGGACACGCCATCGAACTCCAGATCTAGCACCCCACCGCGACTAAGAGGTCGCGGAAGGAAACCATACCTGTCATCCAC
GAACCACGAACCCAACACATGCT---CCGTCTTCCAGAT--GTCATCGATGCAGACCAC-AATCTGCATCCGCTCCTGAA
CTACCTCCCAAGCTCCGCGCCGACGCTGGAGCAAACGCCGTCGCAACGGCGGAGCCCGAGGACACAGGTCCACCACGAGG
ATGACGCCGCCGCCACGCCATCCTTGCTTGAACAGACTGGTTTTCAAATCCATCCCCAACCATAGGACCAATGGCATTGT
CAAGGAAGGATTCGAAGAATCTTT-ATTCAGCGTTGTCATCGTCG---TCGTCGAAACAAAAACAATGAACAGCCTAAAA
ATCTAAAACTACG--AGGGAGT-ACAAACGATCCACACGCGTGGATCCGGTGACCCCCCTCACCACCGACGACCGAGGTC
GCCGGCGGAGGGGAGCCGCCGGAGGACGGCGCTGAAAGATTGG-GTCTCCTGGCGGCGGCTAG-----------------
------------------------------------------------
>chr3B_2447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACCAAAAGCGAAACCATTACCGTTGAACGAATCAGACCGGGGCA---ACACC
CCGGACACGCCATCAAACTCCAGATCTGGCACCCCCACACGACTAAGACGCCGGAGGAGAAAACCATACCTGCCATCCAC
GAACCACGAACCCAACACACGATCCACCATCTTCCAGAT--GCCGCCGATGCAGACCAC-AATCTGCATCCGCTCCTGGA
CTACCTCCCAAGCTCCGCGCCGGCGCTGGAGCAAATGCCGTTGCAACGGCGAAGCCCGAGGACACATGTCCACCATGAGG
ATGTCGCCGCCGCCACACCATCTTTGCTTGAACAGACTGATTTCCAAATCCATCCCCAATCATCGGACCGATCACCTCGT
CGGAGTAGGATCTGAAGACACTCT-ATTCAGCGCT-------TCATCGCCGCCGAAGCAAAAATGATGAACAACCTAAAA
ACCTAAA-CTATGAGAGC--CTAAAAAACGATCGACACGCATGGATCCGGCGACCCCC-TCACCACCGACGACCGAAGTC
GCCGGCGGAGGGGAGCCGCCGGAG--------------------------------------------------------
------------------------------------------------
>chr2B_2447
--------------------------------------------------------------------------------
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----------------------------ACCAAAAGCGAAACCATTACAGTTGAACGAATCAAACCGGGGCA---ACACC
CCGGACACACCATCGAACTCCAGATCTTGCACCCCCACACGACTAAGACGTCGGAGGAGAAAACCATACCTGCCATCCAC
GAACCACGAACCCGGCACACGATCCACCATCTTCCAGAT--GCCGCCGATGCAGACCAC-AATCTGCATCCGCTCCTGGA
CTACTTCCCAAGCCCCGCGCCGACGCTGGAGCAAACGCCGTCGCAACGACGAAGCCCGAGGACACAGGTCCACCACGAGG
ATGTCGCCCCCGCCACGCCATCCTTGCTTGAACAGACAGATTTTTCAATCCATCCCCAACCACAGGACCAATCGGCTCAT
CGGAGTGAGATCTGAAGAAACTTT-ATTCAGCGCCGTCATCGCT---GCCGCCGAAGCAAAAACGATGAACAACCTAAAA
ACCTAAA-CTACAAGAGA--CTAAAAAACAATCCACACGTGCGGATCCGGCGACCTCCCTCACCACCGACGACCGAAGTA
TCCGGCGGAGGGGAGCAGCCGGAGACCGGC---GGCAGAAGCGAGTCTGCCGGCGGCATAAGCTAGATCGCCTTTTCTTT
CTTTCAGGAGAAAGAAAA------------------------------
>SNPs
--S--S-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--------S------S-------------------
--------------------------SS----SS----S-----------------------------------------
--S----------------------------------S--------------SS------S--------SSSSSSSSS-S
-S-------------------S-------------------S----------S--------------------------S
--------S-S---------------------------------------------------------------------
--S-S-S-SSS---------------------------S-----------------------------S-----------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S--S-----------S--S-----------------------------------------------------
-------------------S-------------------------------------S----------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------S-----
--------------------S-----------------------------------------------------------
------------------------------S------------------------------------S-S----------
---------------------S------------S--------S------------------------------------
-------------------S------S------------------S-----------------------S----------
---------------S-------------------S-------S------------------------------S-----
---------------------------------------------------S--------------S-------------
S-----------S------------S--S--------------------------S------------------------
-----------------S---------------------------------------------------------S----
------S-S----------------S-----------------------------------------S---------S--
------------------------------------S------------------------------------S------
S-------SS----------------------------------------------------------------------
--------S---------------------------------------------------------------S-------
----------------S---------S-------------------------------------SS---S----------
----------------S-------------------------------
>forward_880
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CAACACACCGAGTAGGCACT
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2516
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGATCACCACCTCAGCCAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
