>input_sequence_61231
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--------------------------------AGTCAGTGA--------GTGACGCGACGCACTTGCCCGTACACTGCCA
ATCCGCCTGAGATATTTTTCTCTCTCTTTG----------------------------GGGTGAGGGCGT----------
GAGGGAGAGGGAGGCTGAGAGAGAATGCTGCTGCGGAGCGCGTCCTCGCCGCTGCTCAACGCGGCGCGTGTGCCGACGGC
CGCGGCGGTGGAGCATGTAGTGGGCCACGGCCACCTCGCGCTCGCGGTGGCATCGCCGGCGGGGCATCACGGGCCGAGGC
AGCAGGGGGCGCTCTGCCGCGCATTGTCCGAGGCCGATCTGCTGGCGCCGGTGCAGCTCCCGGCCGCC------------
---TCCGCCTTCCTCGAGGAGTTGGACGAGG------------AGGAGGACGAGGACGTGGTCGCGGTCGGGGTGGCGGC
CGTGCCGCTGCGCCGGCTGCTGACCAGCACGGGGCTGGACGCAGCGGGGGAGGAACAGGAGGACGGCGCC------GGCG
GAGCCCTGGCGCTCCTCGAGGGCGTCGGGGGAGGCGGCGGGCGCGGGAGGGTGTGCGGCGGCTGGCAGGGCGGCCGCGGA
------GGGGACGGCGACGGCGACGGCCATGACCGCGGCGCCACCGACGCGCGCTACCGGCGGATGATCAGGGCCAACCC
GGGCAACTCGCTGCCGCTGGGGAACTACGCCAGGTTTCTCAAGGAGGTGCAGGGGGACGCGGCGAGGGCGCAGGAGTACT
GCGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTGGCGATGTACGCGGGCCTCGTCTGGGAGACCAGCCGC
GACGCCGAGCGCGCCGACGCTTACTACAGCCGCGCCGTCCAGGCCGCGCCCGACGACAGGTCAGTCTGCCAGCTC---CA
CCGCGCCACTTCGTTTCTTGCTTGCTTGACATGCGTTTGCGTGACAGTTTC-----TTGCTTCCCTTGCAGCTATGTCCT
GGGATCCTACGCCGGGTTCCTGTGGGACGCCGAGGAGGAAGACGATCTCGACGACGGACAGACTACGGCAGCGACGCCGC
CGTTCTTTGGGGCAGCTCAGCCACCCTCCATCAGAGCGGCATCTTAGACGAAGAACCAACCTCGCTACCAGTAAACAAAC
TGCATCTGG-----------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G374500
ACTTGCGGCGCTCCGGTTCATCGGCTCGAAAAGCATCCTTGTATGTAAAAGTGCTCCTACAGATTTGGGTATGACGGCAA
CTCCCCTCTTTCTTCAGTGTTGCCTCGGTGACCGCGGAAGTCCAAGGCGGACAATATTTCAGCATGGAACAAGATTCTGC
CAAAATGAAATTCTAGTTTTACTTTTTGTGGAGTCTTTGATGCAAGACTACAAGACATTTATGCATGTCTCTTGCGGTGA
CATTGTGTTTACTCTTTGCAATCCGTTTTTCTAGTGAAATACATGTGATTACTTCAATAAAATGATGTTTAGAGGTGTGC
AATTCTAATGAGATGCATTTCTGGTCTGTAGCTTATGTACGAACTGATTTGGGGGCGACGATTGCAGAATGCCCGTCCAT
TCGAAACACGGCTCAGCATAATTTCAATAGTACACGGAGAGACGCAACGGCACGGCACGGCACCACCGTCCGTTGCTCGC
TCGCACGCAGGGATACGCAACTGCACAACCCATCACGGTCCGGCCCTACACTCCTAGGGAAGATTTTGCGCCCCAGAAT-
---------G----------------------------------------------------------------------
-----------------------------------------------------------ATCTTCCCTTGCCGATGATAA
CCAACCGCTCCGTTGCTTCGCGCCACATACAACCGCCGCTCTCCCGCCGTCCGCACGCTACTCGGTTTCACTTTCACCCC
GCAAAGCCAGGCTGGAGAGTGCTGGCCGCCCCATGGTAATGGCTGCCCACGGACCGAGTCACCGGACCAGCCAGCCGCGG
GTTACGCCGTGGGCCGTCGCGCTCGCCGTGCCCACCACCCCCGGTTTGTGTCGCCTAGCCCGGAGCTCATACCGTCCGTC
CGTCGCCCCCGACCCTTCTTTCCTACCCGGGCCCGCCCCCCACTGCGACGGCAACCACCGCGGTGGACCCGCCGGCCCGC
TCG------------CGCCCAGTCGAGGCCCTACACGTCGGCGTTCATCACGTGCCTCATCGCCCCTTCTCGCCGGA-TA
TATATTCGCGCGCCAGCCGTGCCCGCAGTGTCAGTCAGTGA--------GTGACGCGACGCACTTGCCCGTACACTGCCA
ATCCGCCTGAGATATTTTTCTCTCTCTTTG----------------------------GGGTGAGGGCGT----------
GAGGGAGAGGGAGGCTGAGAGAGAATGCTGCTGCGGAGCGCGTCCTCGCCGCTGCTCAACGCGGCGCGTGTGCCGACGGC
CGCGGCGGTGGAGCATGTAGTGGGCCACGGCCACCTCGCGCTCGCGGTGGCATCGCCGGCGGGGCATCACGGGCCGAGGC
AGCAGGGGGCGCTCTGCCGCGCATTGTCCGAGGCCGATCTGCTGGCGCCGGTGCAGCTCCCGGCCGCC------------
---TCCGCCTTCCTCGAGGAGTTGGACGAGG------------AGGAGGACGAGGACGTGGTCGCGGTCGGGGTGGCGGC
CGTGCCGCTGCGCCGGCTGCTGACCAGCACGGGGCTGGACGCAGCGGGGGAGGAACAGGAGGACGGCGCC------GGCG
GAGCCCTGGCGCTCCTCGAGGGCGTCGGGGGAGGCGGCGGGCGCGGGAGGGTGTGCGGCGGCTGGCAGGGCGGCCGCGGA
------GGGGACGGCGACGGCGACGGCCATGACCGCGGCGCCACCGACGCGCGCTACCGGCGGATGATCAGGGCCAACCC
GGGCAACTCGCTGCCGCTGGGGAACTACGCCAGGTTTCTCAAGGAGGTGCAGGGGGACGCGGCGAGGGCGCAGGAGTACT
GCGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTGGCGATGTACGCGGGCCTCGTCTGGGAGACCAGCCGC
GACGCCGAGCGCGCCGACGCTTACTACAGCCGCGCCGTCCAGGCCGCGCCCGACGACAGGTCAGTCTGCCAGCTC---CA
CCGCGCCACTTCGTTTCTTGCTTGCTTGACATGCGTTTGCGTGACAGTTTC-----TTGCTTCCCTTGCAGCTATGTCCT
GGGATCCTACGCCGGGTTCCTGTGGGACGCCGAGGAGGAAGACGATCTCGACGACGGACAGACTACGGCAGCGACGCCGC
CGTTCTTTGGGGCAGCTCAGCCACCCTCCATCAGAGCGGCATCTTAGACGAAGAACCAACCTCGCTACCAGTAAACAAAC
TGCATCTGGAACTCTGGAAAGTATGAGCGACATCCT----------GGCCTCCGAGGGAA----GCCG---CCGCCGTCA
CCGGCCCGGTCGCGGCAGACCGTAGTAGACTGAATAAACCAAGTCCGGCTACCTGTGT----------------------
-GAAAAATGAATCTGGAAAGAGCACTACAACTCTAAGCTTTGCAGGATCTGCAGCACTGTAGGATAAATATCTAGCCGAG
CCTAACAAGGTTTTGCTGTGCTTGTACATGTAGAATGTTCCTGCGGTCCTGCTAAAAATCAGTCGACTGAGATTTAACCA
AGTCTCAGTCGACCATGCAACATTTTATGCCATCGTTTGCAACATTTATTCCTACCGGTTGTAACATCTGTCTTGAATAG
TTGTAGCATGTCATCCCTCATCGGTTGTAGCACATCTTCTCAACGGTTGCAACATCTTCATTGACGGTTGTAGCATTTCA
GTTAAAACGGATGTAGCATTTATTGTTGTTGCTTGTAATGCCGTCGCAACATTTTTCGCCGCCGTTTGTAGCATCTAGCC
ATGCCGTTTGTAGCAAAACAACCACGCTGACGTCATTCGACTGAGACTTCGTTAAGTCTCAGTCGACTGAGTTCTAGACA
CACCCATGTTCCTGATAACATGGTGTATGTAGTGTATGTACCACTTGTGAATTATAGCAAACGCCAGAGCTATCTGCCCC
AGCAGTTCAGCAAAAGTAGATCCATCTTCCATGCAGGAACAGAATACAAAATTACACTGAATGT-CCAAGTTCATCACAG
-ATTGCCGCAAATTTTGCGGT-AAAGAAGACAAGCGAAAACGCATGCGGGGAA---AAGTCTTGCGACCTGGAAATACAA
GGTAGTCATATGCAAATGTTACTAACTACAAATAACACCACTCCCTTGTACTGTTTGAAAAACAACACAAACTGAGAAGA
TAAACAGTACGTTGGCTGCTTGCCATGCTTCAAACTCCAGGTGATTACACTAATTCAAGCACATGATACCAGCCACAAGT
TTACTACCCAAATAA
>chr7A_428
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---------------------------TAGTACACGGAGAGACGCAACA--ACGGCACGGCACCACCGTCCGTCCGTCAC
A--CACGGAGGGGTACGCAACCCATCAGG----------CCGCCCCTACACTCCAAGGGAAGATTTTGCGCCCCAGAACC
ATTGGGTTGG----------------------------------------------------------------------
-----------------------------------------------------------ATCTTCCCTTGCCGATGATAA
CCAACCGCTCCGTTCCTTCGCGCCACATATAACCGCTGCTCTCCTGCCGTCCGCACGCTACTCGGTTTCACTTTCACCCC
GCAAAGCCAAGCTGGAGAGCGCTGGACGCCCCAGGGTAATGGCTGCCCACAGACCGAGTCACCGGAAGAGCCAGCCGCGG
GTTACGCCGTGGGCCGTCGCGCTCGCCCACCA------CCCCGCGCTGTGTCGCCTAGCCCGGAGCTCATACCGTCCGTC
CGTCGCCCCCGACCCCT-CTTCCTACCCGGGCCCGCCCCCG-CTGCGGCCGCAACCACCACGGGCCCGC-----------
-CG------------CGCCCAGTCGAGGCCCCACACGTCGGCGTTCATCACGTGCCTCATCGGCCCTGCTCGCCGGA-TA
TATATCT-CGCGCCAGCCGTGCCCGCAGTGTCAGTCAGTGACTCAGTGAGTGACGCGACGCGCTTGCCCGTACGCTGCCA
GTCCGCCTGAGATATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGGTGAGGGTGAGGGACT----------
GAGGGTAGACCGCGGGTGCCCGTGATGCTGCTGCGGAGCGCGTCCTCGCCGCTGCTCAACGCGGCGCGCGTGCCGGCGGC
CGCGGCGGTGGAGCATGTACTGGGCCACGGGCAC------CTCGCGGTGGCGTCGCCGGCGGGGCATCACGGGCCGAGGC
AGCAGGGGGCGCTGTGCCGCGCATTGTCCGAGGCCGATCTGCTGGCGCCGGTGCAGCTCCCGGCCGCC------------
---TCCGCCTTCCTCGAGGAGTTGGACGAGGAGGAGGCGCAGCAGGAGGACGAGGACGTGGTCGCGGTCGGGGTGGCGGC
CGTGCCGCTGCGCCGGCTGCTGACGAGCACGGGGCTGGACGCCGCGGGGGAGGAACAGGAGGCCGGCGCC------GGCG
GAGCCCTGGCGCTCCTCGAGGGCGTCGGGGGAGGCGGCGGGCGCGGGAGGGTGTGCGGCGGCTGGCAGGGCGGCCGCGGA
GGAGACGGGGACGGCGACGGCGACGGAGGTGACCGCGGCGCCACCGACGCGCACTACCGGCGGATGATCAGGGCCAACCC
GGGCAACTCGCTGCCGCTGGGGAACTACGCCAGGTTCCTCAAGGAGGTGCAGGGGGACGCGGCGAGGGCGCAGGAGTACT
GCGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTGGCGATGTACGCGGGCCTCGTCTGGGAGACCAGCCGC
GACGCTGAGCGCGCCGACGCTTACTACAGCCGCGCCGTCCAGGCCGCGCCCGACGACTGGTCAGTCAGCCAAACAACTCA
GCGCGCCACTTCGCTGCTTCCTTGCTTGGCATGCGT------GACAGTTTCTCGCTGTGCTTCTCTTGCAGCTATGTCCT
GGGATCCTACGCCGGGTTCCTGTGGGACGCCGAGGAGGAAGACGGTCTCAACGACGGGCAGCCTCCGGCGGGGTCGCCGC
CGTTCTATGGGGCAGCGCAGCCATCCTCCATCAGAGCGGCTTCTTAGACGAAGAATCAATCTCACTACCAGTAAACAAAC
TACATCTGGAACTCTGCAAGGAAGAGCGACATGCCACGATCACAGCGGCCTCTGAGGGAG----GCCGCCACCGCCGTCG
CCGGCCGGGACGCGGCAGCTT---GTAAACTGAATAAACCAAGTCCGGCTACCTGTGT----------------------
-GAGCAGTACGCT------------------TCTAAGGTTGGTAGGATCTGCAGCACTGCAGGATAAATATGT-----AG
CCTAATAAGGTTTTGCTGTGCCTGTACATGTAGAATGTTCCTG-------------------------------------
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--------------ATAACATGGTGTACGTGGTGTATGTACCACTTGTGAATTACAGTAAATGCCAGAACCGATTGCCCC
AGCAGTTCAGCAGAAGCAGATCCATCTTCCATGTAGGAACAGAACACAAAATTACACTGAATGCACCAAGTTCATAGCAA
AATTGGCACAAATTTTGCAGTAAAAGAAGAAAAGGGAAAACTCATGCAGGAAAAAGAAGTCTCGCGGCTTGGAAATACAA
GGTAGTCATATGCAAATGTTACTAACTACAAATAACACCACTCCCTTGTACTGTTTGAAAAACAACACAAACTGAGAAGA
TAAACAGTACATTGGCTGCTTGCCATGCTTCAAACTCCAGGTGATCACACTAATTCAAGCACATGATACCAGCCACAAGT
TTACTACCCAAAT--
>chr7B_428
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---------------------------TAGTACACGGAGAGACGCAACGGCACGGCACCAT---------CGTCCGTCAC
TCGCACGCATGGGTACGCAACTGCACGACCCATCACGGGCTGCCCCTACACTCCAAGGGAAGATTTCGCGCCCCAGAACC
TTTGGATTGGATCTTCCCTTGCCGGGTGCGAAGTGGGTCGCCTTCGTTGTTCGCAGCAAGTAGTTGACGTTGTTATATGT
CTTATTTTTTTTCTTCTATAAAGCTACGGTACGTAATTTGCGTACCCTCGAAAAAAAAAATCTTCCCTTGCCGATGATAA
CCAACCGCTCCGTTCCTTCGCGCCACATACAACCGCCGCTCTCCTGCCATCCGCACGCTACTCGGTTTCACTTTCACCCC
GCAAAGCCAAGCTCAAGCTGGCCGGACGTCCACA-GTAATGGCTGCCCACAGACCGGGTCACCGGACCAGCCAGCCGCGG
GTTACGCCGTGAGCCGTCGCGCTCGTCCACCA------CCCCGCGCTGTGTCGCCTAGCCCGGAGCTCATACCGTCCGTC
CGTCGCCCCCGACCCTTCCTTCCTACCCGCCCCCGCCCCCG-CTCCGACGGCAACCACCGCGGTGGACCCGCCGGCCCCG
CTGCGCACCCGCTCACGCCCAGTCGAGGCCCTACACGTCGGCGTTCATCACGTGCCTCTTCGGCCCGGCCGCCGGATTTA
TATATTCGCGCGCCAGCCGTGCCCGCAGTGTCAGTCGGTGA--------GTGACGCGACGCACTCGCCCGTACACTGCCA
GTCCGCCTGAGATATTTTTCTCTCTCTCCG----------------------------GGGTGAGGGTGCGGCAGAGGGA
GAGGGTAGACCGCGGGTGGGCGTGATGCTGCTGCGGAGCGCGTCCTCGCCGCTGCTCAACGCGGCGCGCGTGCCGGCGGC
CGCAGCGGTGGACCATGTAGTGGGCCACAGGCAC------CTCGCGGTGGCGTCGCCGGCGGGGCATCACGGGCCGAGGC
AGCAGGGGGCGTTGTGCCGCGCATTGTCCGAGGCCGATCTGCTGGCGCCCGTGTCGCTCCCGGCCGCGAGGAGCTCGTCC
GCGTCCGCTTTGCTCGAGGAA---GACGAGGAGGAGGCGCAGCAGGAGGACGAGGACGTGGTCGGGGTCGGGGTGGCGGC
CGTGCCGCTGCGCCGGCTGCTGACGAGCGCGGGGCTGGACGCGGCCGTGGGGCGGGACGAGGAGGCTGCAACCGGTGGCG
GAACCCTGGCGCTCCTCGAGGGCGTCGGGGGAGGCGGCGGGCGCGGGAAGGTGTGCGGCGGCTGGCAGGGCGGCCGTGGA
GGAGACGGGGACGGCGACGGCGACGGAGGTGACCGCGGCGCCACCGACGCGCACTACCGGCGGATGATCAGGGCCAACCC
GGGCAACTCGTTGCCGCTGGGGAACTACGCCAGGTTCCTCAAGGAGGTGCAGGGGGACGCGGCGAGGGCGCAGGAGTACT
ACGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTGGCGATGTACGCGGGCCTCGTCTGGGAGACCAGCCGC
GACGCCGAGCGCGCCGACGCTTACTACAACCGCGCCGTCCAGGCCGCGCCCGACGACTGGTCAGTCAGTCAGCTAGCTCA
GCGCGCCACTTCATTGCTTGCTTGCTTGGCATGCGT------GACATTTTCTTGCTTTGCTTCTCTTGCAGCTATGTCCT
GGGATCCTACGCCGGGTTCCTGTGGGACGCCGAGGAGGAAGACGATCTCAACGACGGGCAGCCTCCGGCGGGGTCGCCGC
CGTTCTATGGGGCAGCGCAGCCATCCTCCATCAGAGCGGCATCTTAGACGAAGAACCAATCTCACTGCCAGTAAACAAAC
TGCATCTGGAACTCTGCAAGGAAGAGCGACATGCCACGATCACGGTGGCCTCCCGAGGGAAGCCGCCGCCACTGCCGTCG
CCGGCCGGGTCGCAGCAGCTG---GTAAACTAAATAAACCAAGTCCGGCTAAATATGTAGTGTGCAAAATGAATCTGGAA
AGAGCAGTGCGCT------------------TCTAAGGTTGGTAGGATCTGCAGCACTGCAGGATAAATATGT-----GG
CCTAATAAGGTTTTGCTGTGCTTGTACATGTAGAATGTTCCTG-------------------------------------
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--------------ATAGCATGGTGTATGTAGTGTATGTACCACTTGTGAATTACAGTAATTGCCAAAACCGATTGTCCC
AGCAGTTCAGCAGAAGCAGATCCATCTTCCATTTAGGAACAGAATACAAAATTACACTGAATGCACCAAGTTCATCACAA
AATTGGTGCAAATTTTGCGGT-AAAGAAGACGAGGGAAAGCGCATGCGGGGAAAAGAAGTCTCACGACCTGGAAATACAA
GGTAGTCATATGGAAATGTTACTAACTACAAATAACACCACTCCCTTGTACTGTTTGAAAAACAACACAAACTGAGAAGA
TAAACAGTACATTGGCTGCTTGCCATGCTTCAAACTCCAGGTGGTCACACTAATTCAAGCACATGATACCAGCCAGAAGT
TCACTACCCAAATAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------SSS--S-
------------S-------------------------S---S-----------S-----------------------S-
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--------------S-----------------------------S-----------------------------------
---------S---------S-----S-------S----------------S-----------------------------
---------------------------SSS-SSSSSSS-----SSS----------------------------------
------------------S---------------------SS------------------------------------SS
S-------------------------------------------------------------S----S------------
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S--------------------------S---------------------------------------S------------
-----SSSSSSSS-SSSS-SSSSS--------------------------------------------S------S----
------------------------------S---SSSSSS-----------S----------------------------
-------------S------------------------------------------------------------------
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------------------------S-----------------S-------------------------------------
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--------------------------SSS-----------------------S---------------------------
------------------------------------S-------------------------------------------
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---------------------------------------------------------S--------S-------S-----
S--------------S------------S-------SSSSSS---------------------S----------------
-------------------------------------------------S-------S---S--S----S-S-S------
------S---------S------S-----------------------------------S---S----------------
----------------S--S-S-SSSSSSSSSS--S-------------------------------------------S
------S-----------SSSSSS---S----------------------------------------------------
---SS-S--SSSSSSSSSSSSSSSSSSSSSS------S--S-S----------------S-----------S-SSSSS--
-----S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------------------------------------S--S---S------S-SSSS------
------------S---S----------------S-----------------------------S---------------S
-----S----------------------------S---------------------------S-----------------
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----------S----------------------------------S----------------------------------
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>forward_415
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---------------------------------------------------------------------------TCCAT
TCGAAACACGGCTCA-----------------------------------------------------------------
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>reverse_2096
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---------------TCTTGCTTGCTTGACATGCG---------------------------------------------
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>forward_417
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-----------------------------------------------------------------------------CAT
TCGAAACACGGCTCAGC---------------------------------------------------------------
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>reverse_2554
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-------------------------------------------------------------------------AGCCGAG
CCTAACAAGGTTT-------------------------------------------------------------------
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