>input_sequence_61218
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---------------------------------------------------------ATGCCGGTAAATATTCCAAGAAG
GTCACCATCCTCTTCCTCC---------GCAACCGCTTACCTCACTAACCACGTACGTAAGG--TGCCCGCGCCTATATT
ACCACCACCCTTCGCCGCTTCACCTCTCATTAATCCACCAACACCACCGCTTGCTCCCCTTCATATCGTAGATTGTTGTT
GCATTGCCCTGGAGGAGACGAGGTCATTAGTCGATTACCAGCTGCCGATCTGTTGCGGATTAATTGGGCAGAAGGCAGTC
GGTGATCTCTTGATTGATTTGCGCACCATGAAATTCGGAAAGTGGCTCAAGCGGCAGATCGAGCAGAGCCTCCCGGCGTG
GAAGGACGAGTTTCTGAGCTACAACGAGCTCAAGCCCGTCATCGGCGCCGTCTCGCCGGCCGAGTTCGTCGCCCGCCTCG
ACGTTGAGATCGAGAAGATCAACGCCTTCTTCATCGAGCAGGAGGAGTTCTTCATCATCACACACAGGGTACGTATATGC
GCTGATCACTGTC----CAGACCCAATGGCTTCGCTTGCCCTGTGAATTTCTCTGACGGTTTATGCGTTCTTGGCGGTGT
GTGTACGATCAGGAGCTGCAGGGGGCGATCAGGAGCGCGCTGGAGAGGAAGCCGGCGGTGCCGGCGGCGGCGCACGAGGC
GGAGATCGCGGCGATCCGGAGGGAGATCGTTAACTTCCACGGCGAGATGGTGCTGCTGCTCAACTACAGCAGCGTCAACT
ACATCGGCCTGGCCAAGATCCTCAAGAAGTATGACAAGCGCACGGGCGCCGGGATCCGGCTCGCCGTCATCGAGACCGTG
CTAGTGCAGCCCTTCTTCACGGCGGAGGCGGTGTCCCTGATGGTGAGGGAGTGCGAGGCCATGATGGAGGCGGTGTTCCC
CACGGCGCCCGGCGAGGGGCAGGCGGCGGCGCGGCGGGACCGCGAGGCCCTGGTCGCCGCGGAGCAGAGGATCTTCCGCA
ACACCGTGTCGGCGCTCCTGGCCATGCAGGACGTGCGCAGCGGCAGCTCCACGCGCGGCCGCCACTCGCTGCCGCCGCTC
AACCTGCCTGACTCGGACTGGCTCCGCTCCTTCTAG--------------------------------------------
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>chr2D_1_TraesCS2D01G177100
CCGACACCG-AAATCGCTACGTCCACACCCTACTTAGCCCCCTCTAA-CTTGGGTTTCCAGCTAGGCACTCAATAAATAA
ATAAA--ATCGAAGTTCAATGTTTTTCCAGACGGTGCATAAGCCTTCGAAAGTTTTTCAATTTTTCCTAACGAGTGCAAA
AGCCTTTGTCAGTTTGCACATGAGAGTTCCCATTAAAATTCCTACTATTTTTTGTGAAAATTTTATAG------TGTAGT
AACTGCAAGGTTAAACATCTAAATACCGAAGTTTTACAAAAACCATCTGTACAAGTATGCCAAGCACACTTGCACAAAAT
GATCCGCCCATAAGCTCAAAGTTGCCTTGTACGTCAATAGTGCCCGCAAAGTTTCAAACAGTTTTTACGAAAATTGTATA
GTGTAAACGTGAGGTTGAATAGTCAAATATAAAAGTTTGTGGG-ACTCAATTGCACGAAATGATCCGCCAATATGCCCAG
AGTTGCTCCTCCATACCTAAACAACGCTACTCGTAAAAAATTCAAACTACTCTGTGGACAATCTATAGTCTGGATGCAAG
GTGTAAATTTAAATACTGATGCTTTATGAAACCTACTGCTTGTCTGGTTCGGCCTACCGATAAGCTCCAAG-TAGCTTCT
TTGTACGCGGACAATGCTGGTCAAATTTGAGATGATTTCGAGTGAATTTTCCGTGTGAATACAAGGTTCAAATTCTAAAC
ATCGGGATTTCATGGAGATAATATCTTCCATTTTCGTGCGACATCCATACATAAATACTTGAATTGGAATTTTTTAAATC
AAATTCAAATTCTATCAAAGTATTATGGAATCATTTTTTGAGGATAAAAAAAATTGATTGTACAAAATT-AATTTTTGAG
AGACAAACGAGATACTACCCGTGA---TATTAATTTTTAAGCTAGAGCAGAG-CAGAAGGTTCTCAACACCCGGGTGCCC
ATAGCGCGGCCTCACGCACACCGCCCCACGCCTCACGCCCCTTGCCACGCTTAGCATATGCCGGTAAATATTCCAAGAAG
GTCACCATCCTCTTCCTCC---------GCAACCGCTTACCTCACTAACCACGTACGTAAGG--TGCCCGCGCCTATATT
ACCACCACCCTTCGCCGCTTCACCTCTCATTAATCCACCAACACCACCGCTTGCTCCCCTTCATATCGTAGATTGTTGTT
GCATTGCCCTGGAGGAGACGAGGTCATTAGTCGATTACCAGCTGCCGATCTGTTGCGGATTAATTGGGCAGAAGGCAGTC
GGTGATCTCTTGATTGATTTGCGCACCATGAAATTCGGAAAGTGGCTCAAGCGGCAGATCGAGCAGAGCCTCCCGGCGTG
GAAGGACGAGTTTCTGAGCTACAACGAGCTCAAGCCCGTCATCGGCGCCGTCTCGCCGGCCGAGTTCGTCGCCCGCCTCG
ACGTTGAGATCGAGAAGATCAACGCCTTCTTCATCGAGCAGGAGGAGTTCTTCATCATCACACACAGGGTACGTATATGC
GCTGATCACTGTC----CAGACCCAATGGCTTCGCTTGCCCTGTGAATTTCTCTGACGGTTTATGCGTTCTTGGCGGTGT
GTGTACGATCAGGAGCTGCAGGGGGCGATCAGGAGCGCGCTGGAGAGGAAGCCGGCGGTGCCGGCGGCGGCGCACGAGGC
GGAGATCGCGGCGATCCGGAGGGAGATCGTTAACTTCCACGGCGAGATGGTGCTGCTGCTCAACTACAGCAGCGTCAACT
ACATCGGCCTGGCCAAGATCCTCAAGAAGTATGACAAGCGCACGGGCGCCGGGATCCGGCTCGCCGTCATCGAGACCGTG
CTAGTGCAGCCCTTCTTCACGGCGGAGGCGGTGTCCCTGATGGTGAGGGAGTGCGAGGCCATGATGGAGGCGGTGTTCCC
CACGGCGCCCGGCGAGGGGCAGGCGGCGGCGCGGCGGGACCGCGAGGCCCTGGTCGCCGCGGAGCAGAGGATCTTCCGCA
ACACCGTGTCGGCGCTCCTGGCCATGCAGGACGTGCGCAGCGGCAGCTCCACGCGCGGCCGCCACTCGCTGCCGCCGCTC
AACCTGCCTGACTCGGACTGGCTCCGCTCCTTCTAGCCGCCGGGCCCCCATTCCCCGTCCAATGCCCCCCGCCGGCCTCT
TCTTGGTGGTCTCCCCAGCCACCACAGCCACAGCCCACAGATATGTAATTGGTTATCTGTAGTTTCTAACTTCTTTTTTG
TCTCCTTTTCATTTTACCACATGCTGGTG-------TAAGATGGTAACAAGATGTGAGCATACAAATTCATACTCCTGTG
CATTATGCTCCTAAATCTTTGTCAGGACACTGACCGAGCGTCAAATCTACTTGAGTTTCTGCTTAAATATGGTTTGAGTG
CGTCGTAGAAAATTAAATCTAATTCAAACTGTCATGATGATCAAGAAAAATCATGGTTCAAATTTTCTAAGAAACAAATT
AGCAGTTCTTTCAGCTC-TGGCTCCTGATGAGTCCAGAGGTCAAGGCAAAACGTCCAACGG-AAATTGATCGTTCCCCAA
TGGTTATACTGTTTCAGGATTTTCAGACCAATCACGAGTTAATCCATTAGTCTGAGGCTGATAATGCTAAGTGACTGGAT
CAAGCAAATCGACACCGAGGGTTCATATGTTTAGAGAAACAATTCCGTCAGACTCGAGCTACGCAAGATGATTCCTTCGC
CGAAACGAATATACCTTTGATATTGTAGCGAAGCGGCCAAAAGACCGCATCAAAAGCGACGAAGATAAACTATTTATTGT
CAATGTGCACAGCCTGCGATTTTGGTTGGGGATTCACCAACTCGTTGTCATAAAAATTGTTGCAGCGAGTAAGAACAAGT
TTCATAGTCCGCGCCGTTCTCTTTGTTTTTATCGATTCTTTCTTCCTCTCATGTTGGAAGATGATAGGTATATTCTTGCT
CCAGGATCGACGGTAGGTAGTAGGTGCAAAGGAAGATGGACTGAATTTGCAAGGCAATTCCGAATTTCTATATA-TCCTC
CAAAATGCTAAAACTCGAACAATGAGATAGCAAGCTGAGTCTGTTTTTATTTTTGGATGATGGATG-AAAATGGGCCATG
CATTTTA
>chr2A_1
CCGCCACACAAAATCGCTACGTCCACACCCTACTTCGTCCCCTCTAA-CTTGGGTTTCCAACCAGGCACTCAATAAATAA
ATAAATAATCTAAGTTCAATGTTTTTTTAGACGGTGCATAAGCCTTCAACAGTTTCTGTTTTTC-CCTAACTAGTGCATA
AGCCTTTGCCAGTTTGCGCATGAGAGTGCCCATAAAAATTCCTACTATTTTTTGTGAAAATTTTATAATGTAACT---GT
AACTGTAAGGTTAAACATCTAAATACCGAAGTTTTACAAAAATCATCAGTACAAGCATGTCAGGCGCACTTGCACAAAAT
GATCCGCCCATAAGCTCAAAGTTGCTATGTATTTCAATAGAGCCCGCAAAGTTTCAAACAATTTTTACGAAAATTGTATG
GTGTAAACATGAGGTTGAATAGTTAAATATCGAAGTTTGTGGG-ACTCAATTGCACGAAATGATCCGCCAATATGCCCAG
AGTTGCTCCTCAATACCTAAACAACGCTACTCGTAAAAATTTCAAACTACTTTGTGGAAAATTTATAGTCTGGACACAAG
GTATAAATTTAAATACTGACGCGTTATGAAACCTACTACTTGTCTGGTTCGGCCTACCGATAAGCTCAAAG-TAGCTTCT
TTGTACGCGGACAATGGTGGTCAAATTTCAGATGATTTCAAGTGAATTCTCTGTGCTAATACAAGGTTCAGATTCTAAAC
ATCGGGATTTCATGGAGATAGTATCTTCCATTTTCATGCGACATCCATACATAAATATTTGAATTGGAATTTTTAAAATC
AAATTCAAATTCAATCAAAGTATTATGAAATCGTTTTTTTAGGGT--AAAAAATTGATTGTACAAAATTTAACTCTTGAG
AGACAAACGAGGTACAAA--GTGA---TATTAAATTTTAAGCTAGTGAGCAGACAGAAGGTTCTCAGCCACCGGGTGCCC
ATAGCGCGGCCTCACGCACATCGCCCCACGCCTCACGCCCCTTGCCACGCTTAGCATATGCCGGTAAATATTCCAAGAAC
GTC-CCGTCCTCTTCCTCC---------CCAACCGCTTACCTCACTAACCACGTACGTACGGTA--GCCGCGCCTATATT
ACCAGCACTCGTCGCCGCTTCACCCCTCATTAATCCATCAACACCACCGCTTGCCCCCCTTCAT----------GTTGTT
GCATTGCCCTCGGGGAGACGAGGTCATTAGTTGATCACCAGCAGTCGATCGGTTGGGGATCAATCGAACAGAAGGCAGTC
GGTGATCTCTTGATTGATTTGGACGCCATGAAATTCGGAAAGTGGCTCAAGCGGCAGATCGAGCAGAGCCTCCCGGCGTG
GAAGGACGAGTTCCTGAGCTACAACGAGCTCAAGCCCGTCATCGGCGCCGTCTCGCCGGCCGAGTTCGTCGCCCGCCTCG
ACGTTGAGATCGAGAAGATCAACGCCTTCTTCATCGAGCAGGAGGAGTTCTTCATCATCACACACCGGGTACGTATATGC
GCTGATCACTGTC----CAGACCCGATGGCTTCGCTTGCCCTGCGAATTTCTCTGACGGTCTGTGCGTTCTTGGTGGTGT
GTGTGCGAGCAGGAGTTGCAGGGGGCGATCAGGAGCGCGCTGGAGAGGAAGCCGGCGGTGCCGGCGTCGGCGCACGAGGC
GGAGATCGCGGCGATCCGGAGGGAGATCGTCAACTTCCACGGCGAGATGGTGCTGCTGCTCAACTACAGCAGCGTCAACT
ACATCGGCCTGGCCAAGATCCTCAAGAAGTACGACAAGCGCACGGGCGCCGGGATCCGGCTCGCCGTGATCGAGACCGTG
CTGGTGCAGCCCTTCTTCACGGCGGAGGCGGTGTCCCTGATGGTGAGGGAGTGCGAGGCCATGATGGAGGCGGTGTTCCC
CACGGCGCCCGGCGAGGGGCAGGCGGCGGCGCGGCGGGACCGCGAGGCCCTGGTCGCCGCGGAGCAGAGGATCTTCCGCA
ACACCGTGTCGGCGCTCCTGGCCATGCAGGACGTGCGCAGCGGCAGCTCCACGCGCGGCCGCCACTCGCTGCCGCCGCTC
AACCTGCCGGACTCGGACTGGCTCCGCTCCTTCTAGCCGCCGC-CCCCCATTCCCCGTCCAATGGCCCCCGCCGGCCTCT
TCTTGGTGGTCTCCCCAGCCACCACAGCCACAGCCCACAGATATGTAATTGGCTATCTGTAGTTTCTAACTTCTTTTTTG
TCTCCTTTTCTTTTTACCACATGCTGGTGTAAGAATTAAGATGGTAACAAGATGTGAGCATACAAATTCATACTCCTGTG
CATTATGCTCCTAAATCTTTGTCGGGACACTGACCGAGCGTCAAATCTAGTTGAGTTTCTGCTTAAATATGG-TTGAGTG
CGTCGTAGAAAATTAAATCTAATTCAAACTGCCATGATGCCCAAGAAAAATTATGGTTCTAATTTTCTAAGAAACAAACT
AGCAATTCTTTCAGCTCCTGGCTCCTGATGAGTCCAGAGGCCAAGGCAAAACGTCCAACAG-AAATTGATCGTTCCCCAA
CGGTTATACTGTTTCAGAATTTTCAGACCAATCGCGAGTTAATCCATTAGTCTGAGGCTGATAATGCTATGTGACTGGAT
CAAGCAAATCGACACCGAGGGCTCATATGTTTAGAGAAACAATTCCGTCAGACTCGAGCTACGCAAGATGATTCCTTCGC
CGGAACGAATATACCTTTGATATTGTAGCGAAGCGGCCAAAAGACCGCATCAAAAGCGACGAAGATAAACTATTTATTGT
CAATGTGCACAGCCTACGGTTTTGGTTGGAGATTCAGCAGCTTGTTGTCAT-AAAATTGTTGCAGCGAGTAAGAGCAGGT
TTCATAGTCCGCGCCGTTCTCTTTGTTTTTATCGATTCTTTCTTCCTCTCATGTTGGAAGATGAGAGGTATATTCTTGCT
CCAGGATCGATGGTAGGTAGTAGGTGCAAAGGAAGATGGACTGAATTTGCAAGGCAATTCCGAATTTCTAAATATTCCTC
CAAAATGCTAAAACTCGAACAATGAGATAGCAAGCCGAGTCTGTT-----------------------------------
-------
>chr2B_1
CCGACACCG-AAATCGCCACGTCCACACCCTACTTCGTCCCCTCTAAACTTGGGTTTCCAACTAGGCACTCAATAAATGA
ATAAA--ATCTAAGTTCAATGTTTTTCCAGACGGTGCATAAGCCTTCAC-AGTTTTTTCATCTTTCCTAACGAGTGCATA
AGCCTTTGCCAGTTTGCGCATGAGAGTGCCCATAAAAATTCCTACTATTTTTTGTGAAAATTTTATAG------T---GT
AACTGCAAGGTTAAACATCTAAATACCGAAGTTTTACAAAAACCATCTGTACAAGTATGTCAGGCACACTTGCACAAAAT
GATCCGCCCATAAGCTCAAAGTTGCTTTGTACGTCAATAGTGCCCGTGGAGTTTCAAGCAATTTTTACGAAATTTGTATA
GTGTAAACGTGAGGTTGAATAGTTACAAATCAAAGTTTGTGGGTACTCACTTGCACGAAATGATCCGCCAATATGCCTAG
AGTTGCTCCTCGATACCTAAACAACACTAATTGTAAAAAATTCAAACTACTTCGTGGACAATTTATAGTCTAGACACAAG
GTATAAATTTAAATACTGACGCTTTATGAAAC-----------CTGGTCCGGCCTACCGATAAGCTCAAAGATAGCTTCT
TTGTATGCGGACAATGCTGGTCAAATTTCAGATGATTTCGAGTGAATTTTTTGTGTGAATACAAGGTTCAAATTCTAAAC
ATTGGGATTTCATGGAGATAATATCTTCCATTTTCGTGCGACATCCATACATAAATATTTGAATTGGAGTTTTTAAAATC
AAATTCAAATTCTATGAAAGTATTATGAAATCATTTTTTGAGG----AAAAAATTGATTGTAGAAAATTTAATTCTTGAG
AGACAAACGAGATACTACCGGTGATACTATTAATATTTAAGCTAGAGCAGAG-CAGAAGGTTCTCAACCACCGGGTGCCC
ATAGCGCGGCCTCACGCACACCGCCCCACGCCTCACGCCCCTTGCCACGCTTAGCATATGCCGGTAAATATTCCGAGAAC
GTCACCATCCTCTTCCTCTTCCTCTCCTCCAACCGCTTACCTCACTAACCACGTACGTACACGCTGGCCGCGCCTATATT
ACCAGCACTCGTCGCCGCTTCACCCCTCATTAATCCATCAACACCACCGCTTGCTCCCCTTCATATCGTAGATTGTTGTT
GCATTGCTCTCGAGGAGACGAGGTCATTAGTTGATTACCAGCTGCCGATCGGTTGCGGATTAATTGGGCCGAAGGCAGTC
GGTGATCTCTTGATTGATTTGGACGCCATGAAATTTGGAAAGTGGCTCAAGAGGCAGATCGAGCAGAGCCTCCCGGCGTG
GAAGGACGAGTTCCTGAGCTACAACGAGCTCAAGCCCGTCATCGGCGCCGTCTCGCCGGCCGACTTCGTCGCCCGCCTCG
ACGTTCAGATCGAGAAGATCAACGCCTTCTTCATCGAGCAGGAGGAGTTCTTCATCATCACGCACAGGGTATGTGTTTGC
GCTGATCACTAGCCAGTCAGCCCCAATGGCTTCGCCTGCGCTGTGAATTTCTCTGACGATTACTGTTTTCTTTGTGT---
-TGTACGAGCAGGAGCTGCAGGGGGCGATCAGGAGCGCGCTGGAGAGGAAGCCGGCGGTGCCGGCGGCGGCGCACGAGGC
GGAGATCGCGGCGATCCGGAGGGAGATCGTCAACTTCCACGGCGAGATGGTGCTGCTGCTCAACTACAGCAGCGTCAACT
ACATCGGCCTGGCCAAGATTCTCAAGAAGTATGACAAGCGCACGGGCGCCGGGATCCGGCTCGCCGTGATCGAGACCGTG
CTAGTGCAGCCCTTCTTCACGGCGGAGGCGGTGTCCCTGATGGTGAGGGAGTGCGAGGCCATGATGGAGGCGGTGTTCCC
CACGGCGCCCGGCGAGGGGCAGGCGGCGGCGCGGCGGGACCGCGAGGCCCTGGTCGCCGCGGAGCAGAGGATCTTCCGCA
ACACCGTGTCGGCGCTCCTGGCCATGCAGGACGTGCGCAGCGGCAGCTCCACGCGCGGCCGCCACTCCCTGCCGCCGCTC
AACCTGCCGGACTCGGACTGGCTCCGCTCCTTCTAGCCGCCGC-CCCCCATTCCCCGTCCAATGATCCCCGCCGGCCTCT
TCTTGGTGGTCTCCCCAGCCACCACAGCCACAGCCCACAGATATGTAATTGGCTATCTGTAGTTTCTAACTTCTTTTTTG
TCTCCTTTTCATTTT-CCACATGCTGGTG-------TAAGATGGTAACAAGGTGTGAGCATACAAATTCATCCTACTGTG
CATTATGCTCCTAAATCTTTGTCGGGACACTGACCCAGCGTCAAATCTAA-----------------------TTGAGTG
CGTCGTAGAAAATTATATCTAATTCAAACTGCCATGATGCTAAACAAAAATTATGGTTCTGATTTTCTAAGAAACAGATT
AGCAATTCTTTCAGCTC-TGGCTCCTGATGAGTCTAGAGGTCAAGGCAAAACGTACAACAGAAAATTGATCGTTCCCCAA
TGATTATACCGTTTCAGATTTTCCAGACCAATCACGAGTTAATCCATTAGTCTGAAGCTGATAATGCTATGTGACTGGAT
CAAGCAAATCGACACCGAGGGCTTATATGTTTAGAGAAACAATTCCGTCAGGCTTGAGCTACGCAAGATGATTCCTTCGC
CGAAACGAATATACC-TTGATATTGTAGCGAAGCGGCCAGAAGACTACATCAAAAGCGACGAAGATAAACTATTTATTGT
CAATGTGCACAGCCTACGATTTTGGTTGGAGATTCAGCAGCTTCTTGTCAT-AAAATTGTTGCAGCGAGTAAGAACAAGT
TTCATAGTCCGCGCCGTTCTCTTTGTTTTTATCGATTCTTTCTCCCTCTCATGTTGGAAGATGATGGGTATATTCTCGCT
CCAGCATCGACGGTAGGTAGTAGGTGCAAAGGAAGATGGACTTAATTTGCAAGGCAATTCCGAATTTCTAAATATTCCTC
CAAAATGCTAAAACTCGAACAATGAGATAGCAAGCCGAGTCTGTTTTTCTTTTTGCATGATGGATGAAAAATGGGCCATG
CATTTTA
>SNPs
-----------------------------------S-S----------------------S-------------------
----------S------------------------------------S-S-------SS-------------------S-
--------S--------S---------S-----S-----------------------------------------SSS--
-----------------------------------------------------------S--S-----------------
-------------------------S----------------------------------S-------------------
-----------------------S------S-------------------------------------------------
-----------S---------------------------------------S----------S-----------SS----
--S----------------S-----------------S-----------------------------S------------
----------------------------S----------------------S----------------------------
---------------------------------------------------------S----------------S-----
---------------------------S---------------S-SS---------------------------S-----
-------------------S------------------------------------------------SS----------
-------------------------------------------------------------------------------S
----------------------------S------------------------------S------S-------------
----S---S-S-------------S------------S------------------------------------------
----------S--------------------S------------------S-----------------------------
---------------------SS-S-------------------------------------------------------
------------S-------------------------------------------------------------------
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--------------------------------------------------------------S-----------S-----
--------S-----------------------------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------------S------------
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--------S---------------------------------SS--------------------S---------------
----------------------------------------------------S---------------------------
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-----------------------S-------------------------S----------------------S-------
-------------------------------S-------S-----------S-------S--------------------
----S------------------------------------------------------S--------------------
-----------------S---------------------------------------------------S----------
---------------------S----------------------------------------------------------
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---------------S-------------S------S--S--S--------S----------------------------
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----------------------------------------------------------------------S---------
-----------------------------------S------------S------S------------------------
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>forward_130
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------------------------------ACGGTGCATAAGCCTTCGAA------------------------------
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>reverse_1232
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-------------------------------CGATTACCAGCTGCCGATCT-----------------------------
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>forward_1069
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---------GTCACCATCCTCTTCCTCCG---------------------------------------------------
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>reverse_2816
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---------------GCGATTTTGGTTGGGGATTCA--------------------------------------------
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