>input_sequence_61193
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-----------------------------------------ATGCCGCCGCCGTCGATGGTGCTGCAGCTCCCACGGCTG
GGCCGAGTCGCCGGAGTAACGGCGGCACCTGCATCCAAAGCCGGGCCCCGCAAATTGAATTTCCATGGGTGCCGCAGCAG
CCGGCGCTCCTCCTCGTCCAGCAGCAGAAGCAGCAGCTGGTTCTCCTCCAACGCCGAGAATCCCGGCCCCGACACCAGAG
ACGATAACAGGACTAGTAGTAGGAGGTGGTGGTCCGACGACCAATTCGACGTGGAGGAGGAGGAGGAGGAGGAGGAATTC
GGGAGCGAGGGCTCGTTTGGTTCTGCAAGGGAGATGTTCGACGAGCCATGGTTTACCAAGGTACTTGCTCATGCTCAGAT
TTCCTCGCGGTAATTTACTCAGATGTGCCATGTGTGCGGTAACTACAACTGGAGTAGTATTATCTATGGCGGCAGGTGTT
CAGGGTGTACGGGTATGTGCTCCCGGTGCTGCTGGCGTCCATGCTGGTGACAACAGGGCCACAGGCTTTCCTCATGGCGA
TGGCCATCCCGCTCGTCCAGTCCGTTCTCTCCTTCGCCATTTCCAAGATTGCTTCGTTTGGCCGGCGCCGCCGTGACGAA
GAAGAATATGACGACGATGGTTATTATTATTCCGATTACGGCAGCGGCGGCTGGGAAGCTGAAGAACAATATAGCAGCAA
CTCTTCCTCCACGTACAGAGGAGGAGACAGCAGCACTGGTAGCAGCAGGTACCAGCAGCAGCAACAGGAGGAGTCTGCAG
ATTCAGATCCAACGGTAGAATCGGGTGATATTAACGGTACCACCGGCACAGCAGCTAGAAGTGAAAGT------------
------------------GGTAGTACCGGTTTTGGAGGATGGGACGAGCTGGAAGAAGGCGGCGACCGCCGCAGCAGCGG
CAGGTCGCGTGCACGGGGGTCGCCGGCGGGTACTGCTACCGCTGGTGGTGCAGTGGGAACGAGTAGACCACCGGCAACTA
GAAGGAGAAGAAGCAGAGGAGCTGCGGCCGCAAGGTACAGGCAAGCGCCCCTGCCGATGCGCTTGCTCATCGCGCTCTTC
CCATTCCTGGGTTCATGGTTCAGAATTTTGCTCTAA--------------------------------------------
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-------------------------------------------
>chr1D_1_TraesCS1D01G234600
TAGGCTAAGCACGGCCGGACGGCTCGCCGGACCCATCGCCGCTGCCGACGGCACGGCAAGGCAAGAGCGGGAGCCTAGCA
TCAGGGTCGGAACAAGCAAGGGAGCGAGCTAGGGAGCTTATGTAAACAACAACCGTGAAGAACCAATAGAGCAATAAGAA
TCATAGCCAGCCTACGTGTGCATGCGTGTGTTGTGTTTCCAGCCGGTTGGCTTCAACGTACGTGCGCGAGAGTTGCGCGT
TTTTTGACCGGTGGCC-AATCAATTAGCTTGGCTAGCTTCGCACAGCAGGATCGGTCAAGTTACTTGCTGCTTTGAATGC
GTATGGCTGTCAATCAGAACTACTTATCTTTGTGCAAGATCGTTAGGAGCGAAGCAAGAGGCAGAGCAGCACGGAGGTGA
GGCCACGGGCTGCCGGATGCGGAGGAGCAGATGTGCGGCCAGGTGCTTCCGTGGGCACAGAGAGAGGAAGAACACAAAGG
TGAGGTGGACAATGATGTGGCGAGGTCAGCGGTCAAAACCATGCCATGTCAGCACAAAATCACCTGAAGCGGTTTGAGGG
ACGGAAACTATCCGGATTTGACAATTGAGGGACTAGGTTTTTTCGGTTTTGGAGTTGAGGGATGCTTTCTAAACTTTCAA
TAAAGTTGAGGGACGAAAAATATACTTATCCCAACTCCCTCACACGAGTTGTCCTACGTGGCACATAAAAACAACCTTTT
CATGCCAAAATTCCTGCAAAAGGCGCTGGACGACGATGAACACGTATGGGTGAGTTGTCTAACGCCCACACGTGTGGGCC
CGTAGCAATCGCACGGGCAATTGTCTAGTAGAATAAAATATCTCAGCTCACGAGTCACGACCAAATGCGAGCAACCATCA
AGCGCTCCACCACCGGAAAAGAAACCGAGCGGGTTATCCACATCTCTCGTGTCGTCGTGGCTTATTCTTCCGCCACCCAC
CCACCCCACGTCCGCTGCCGAGTATAGTAAGTAGAGATGAGATGCCGCCGCCGTCGATGGTGCTGCAGCTCCCACGGCTG
GGCCGAGTCGCCGGAGTAACGGCGGCACCTGCATCCAAAGCCGGGCCCCGCAAATTGAATTTCCATGGGTGCCGCAGCAG
CCGGCGCTCCTCCTCGTCCAGCAGCAGAAGCAGCAGCTGGTTCTCCTCCAACGCCGAGAATCCCGGCCCCGACACCAGAG
ACGATAACAGGACTAGTAGTAGGAGGTGGTGGTCCGACGACCAATTCGACGTGGAGGAGGAGGAGGAGGAGGAGGAATTC
GGGAGCGAGGGCTCGTTTGGTTCTGCAAGGGAGATGTTCGACGAGCCATGGTTTACCAAGGTACTTGCTCATGCTCAGAT
TTCCTCGCGGTAATTTACTCAGATGTGCCATGTGTGCGGTAACTACAACTGGAGTAGTATTATCTATGGCGGCAGGTGTT
CAGGGTGTACGGGTATGTGCTCCCGGTGCTGCTGGCGTCCATGCTGGTGACAACAGGGCCACAGGCTTTCCTCATGGCGA
TGGCCATCCCGCTCGTCCAGTCCGTTCTCTCCTTCGCCATTTCCAAGATTGCTTCGTTTGGCCGGCGCCGCCGTGACGAA
GAAGAATATGACGACGATGGTTATTATTATTCCGATTACGGCAGCGGCGGCTGGGAAGCTGAAGAACAATATAGCAGCAA
CTCTTCCTCCACGTACAGAGGAGGAGACAGCAGCACTGGTAGCAGCAGGTACCAGCAGCAGCAACAGGAGGAGTCTGCAG
ATTCAGATCCAACGGTAGAATCGGGTGATATTAACGGTACCACCGGCACAGCAGCTAGAAGTGAAAGT------------
------------------GGTAGTACCGGTTTTGGAGGATGGGACGAGCTGGAAGAAGGCGGCGACCGCCGCAGCAGCGG
CAGGTCGCGTGCACGGGGGTCGCCGGCGGGTACTGCTACCGCTGGTGGTGCAGTGGGAACGAGTAGACCACCGGCAACTA
GAAGGAGAAGAAGCAGAGGAGCTGCGGCCGCAAGGTACAGGCAAGCGCCCCTGCCGATGCGCTTGCTCATCGCGCTCTTC
CCATTCCTGGGTTCATGGTTCAGAATTTTGCTCTAATTCCATAAATTAGGGTCAATTCCTCCACGAAGAATATTTATCGT
TGTTTCTCGTCCAGGTGTATACCAATGTGTATGCATAACTAGATCGATCCTCACGATCCAGTGTGTGTATTACCATTTGA
TTTTTGAAACAGATGTA-------TTACCAGTA---TAATTTTTTAGAAAGAATATGTTCCTGCTAGAAAAACGAGGCAG
TAAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------GTCCCAAGAAAAGTGCCAAAAAATAATGCTTCATGCTTCCCCCT
CCGCCCTTGTGTTGGTTTCAACTATTACTAGATTTTATTGGTGACGCGCGTTGCCCCGTCCATCCATTTTGACAATAGAA
TGATAGGAA-TTTGTAAATATGCGTGACATTTAGCCAGTATACTTTACTCATAAGCTCATAATTTAAACCTCGATGTATT
CTAGAAATCCCTTTAACCAAACTAGAGATCTAGACCAAGCTACGGGATATGCCTAGCTTGAATATTTAGAGAATTGTAGC
ACTTTTCTGACTGCTTGAAACAAATTTCAAAACTTCTATAAAAATCTAGCCATAAATTTATAATTGATGAGCATGAATTA
GCCTGACGCAGATCCATGATTGC--ATAAATTTAAAATTTATTAGAAAATAT--AAGCTAGGCACCGTTCGCCCCCTGCT
AGGTTGTTTCCCTGAGGCGAGACAGGTACATGCGCGTGCCCGGCACTGCGTGTGAGCGTCGGTTGCACCCGACCTGCTGT
CTATTCCCCTCACCTTGCATGTGCCGCCGCGTGCGTCCTTCCTGGATCCTATATGGGGGAAATATCCCGCGCTCCAAAGG
ATCTGGTGCCCCAGGTACTCCATGCACAGCCAAAACGTTGGATGAGGAATGTAGGGACAGGATGGAATCCCAACACCCCA
TCCTTCAGATTTTGCAAAAAGAACCCCATGTAGGTACATAATAGCCGTAAAGTTCCTCCAACCTGTGCTGCCCCGATTGA
ACGAACACGAACATATAGGGCTAGGCTCCGGCGGCGAAGCTCG
>chr7A_1
TAGGCTAAGCACGACTGGACGGCTCGCCGGACCCGTCGCCGCTGCCGGCGGCACGACAAGGCAAGAGCGAGAGCCTAGCA
TCAGGGTCGGACCAAGCAAGGGAGCGAGCTAGGGAGCTGCTGTAAAGAACAACCGTGAAGAACCAATAGAGCAACAGGAA
TCATAGCCAGCCTACGTGTGCATGCGTGTGTTGTGTTTCCAGCCGGTTGGCTTCAACGTACGTGCGCGAGAGTTGCGCGT
TTTC-GACCGGTGGCA-AATCAATTAGCTTGGCTAGCTTCACACAACTGGATAGACCAAGTTACTTGCTGCTTTGAATGC
GTATGGCTGTCAATCAAAGCTACC----------CAAGATCGTCAGGAGCGAAGGAAGAGGCAGAGCAGCACGGAGGTGA
GGCCACGGGCTGCCGGCTGCAACGGAGCAGATGTGTGGCCAGGTGCTTCCGTGGGCACAGAGA-----------------
--------------------------------------------------------------------------------
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GAGGAAGAAGACAAAGGTG-------------------------------------------------------------
-----------------------------------------------------------------AGGTGGACGACGTTG
TGGCGAGGTCAGCGGCCAAAACCATGCCACGTCAGCACAAAACCACCTGAAGCGGTTTGAGGGACGAAAAATATCCGGTT
TCGACAATTGAGGGACTAGGTTTTTCCGGGTTTGGAGTTGAGGGATCCTTG-----------------------------
--------------------------------------------------------------------------------
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------------------------------------CTAAACTTTTGATAAAGTTGAGGGATG-----------------
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------------------------------------------------------AAAAATATACTTATCCC---------
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-------------------------------------------
>chr3A_57
--------------------------------------------------------CAAGGCAAGAGCGGGAGCCTAGCA
TCAGGGTCGGAGCAAGCA------------AGGGAGCTTCTGTAAACAACAACCGTGAAGAACCAATAGACCAACAAGAG
TCATAGCCAGCCTACGTGTGCATGCGTGTGTTGTGTTTCTAGCCGGTTGGCTTCAACGAACGTGCGCGAGAGTTCCGCGT
TTTCTGAGCGGTGGCATAATCAATTAGCTTGGCTAGCTTCGCACAGCAGGATCGATCAAGTTACTTGATGCTTTGAATGC
GTATGGCTGTCAATCAGAACTACTTATCATTGTGCAAGATCATCAGGAGCGAAGGAAGAGACAGAGCAGCACGGAGGTGA
GGCCACAGGCTGCCGGGTGCGGCGGAGCAGATGTGCGGCCAGGTGCTTCTGTGGGCACAGAG------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
GAGGAATAAGACAAAGGTG-------------------------------------------------------------
-----------------------------------------------------------------AGGTGGACGATGATG
TGGCAAGGTCAACGGTCAAAACCATGCCATGTCAGCCCAAAACCACCTGAAGCGGGTTGAGGGACTAAAAGTATCCGGTT
TTGACAATTAAGGGACTAGGTTTTTTCGGTTTTGGAGTTGAAGGATCCTT------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------TCTAAACTTTTGATAAAGTTGAGGGACG-----------------
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------------------------------------------------------AAAAATATAC----------------
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-------------------------------------------
>chr1B_828
TAA-----------------------------------------------------------------------------
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-------------------------------AATAAAATATCTCAGCTCACGAGTCACGACCAAATGCGAGCAACCATCA
AGTGCTCCACCACCGGAAAAGAAACCGAGCGGGTTATCCAGATCTCTCGTGTCGTCGTGGCTTATTCTTCCGCCACCCAC
CCATCCCGCGTCCGCTGCCGAGTATAGTGAGTAGAGATGAAATGCCGCCGCCGTCGATGGTGCTGCAGCTCCCACGGCTG
GGCCGATTCGCCGGAGTAACGGCGGCACCTGCATTCCAAGACGGAGCCCGCAACTTGAATTCCCATGGGTGCCACAGCAG
CCGGCGCTCCTCCTCGTCCAGCAGCAGAAGCAGCAGCTGGTTCTCCTCCAACGCCGAGAATCCCGGCCCCGACACCAGAG
ACGATAACAGGACTAGTAGTAGGAGGTGGTGGTCCGATGACCAATTCGACGTGGAGGAGGAGGAGGAGGAGGA---ATTC
GGGAGCGAGGGCTCGTTTGGTTCTGCAAGGGAGATGTTCGACGAGCCATGGTTTACCAAGGTACTTGCTCATGCTCAGAT
TTCCTCGCGGTAATTTACTCAGATGTGTCATGTGTGTGGTAACTACAACTGGAGTAGTATTATCTATGGCGGCAGGTGTT
CAGGGTGTACGGGTATGTGCTCCCGGTGCTGCTGGCGTCCATGCTGGTGACAACGGGGCCACAGGCTTTCCTCATGGCCA
TGGCCATCCCGCTCGCCCAGTCCGTTCTCTCTTTCGCCATTTCCAAGATTGGTTCATTTGGCCGGCGCCGCCGTGACGAA
GAAGAATATGACGACGATGGTTACTATTATTCCGATTACGGCAGCGGCGGCTGGGAAGCTGAAGAACAGTATAGCAGCAA
CTCC---TCGACATACAGAGGA---GACAGCAGCACTAGTAGCAGCAGGTACCAGCAGCAGCAACAGGAGGAATCTGCAG
ATTCAGATCCAACGGTAGAATCAGGTGATATTGACGGTACCACCGGCGCCGCAGCTAGAAGTGAAAGT------------
------------------GGTAATATCGGTTTTGGAGGATGGGACGAGCTGGAAGAAGGCGACGACCGCCGCAGCAGCAG
CAGGTGGCGTGCACGAGCGTCGCCGGCGGATACTGCTACCGCTGGTGGTGCAGTGAGAACGAGTAGACCACCTGCAACTA
GAAGGAGAAGAAGCAGAGGAGCTGCGGCTGCAAGGTACAGGCAGGCGCCCCTGCCGATGCGCTTGCTCGTCGCGCTCTTC
CCATTCCTGGGTTCATGGTTCAGAATTTTGCTCTAATTCCATAAATTAGGGTCAATTCCTCCACGAAGAATATTTATCGT
T-------------------------------------------CGATCCTCACGATCGAGTGTGTGTATTACCATTTGT
TTTTTGAAACAGATGTA-------TTACCAGTA---TAATTTTTTAGAAAGAATATGTTCCTGCTAGAAAAACGAGGCAG
TAATTGCTGAAATTTAGTCTATTTTGGGACAGCCCAATAATTATTTCAAAAATTCCTAATAAATTCTAGATGCTCACTTA
GCCCATTCGTGCAAGGCAAGGGATACTATTAAAGTTTAGTCTCACATTGCTAGTTTAATAGGAGTTGGACCTCCTTATAA
GGAAGGTTCTTTCCCCACTTGTATGAGCATAAGAACAAAAGGGACATGCACGCGCGCTCCTCCTCCCCCACTGCCCGCCT
CGGCACGACGCGTCGCGCCGCGAGCCGAGCCGATGTCTAAATTTTTGCCAGGCATGACGGGTATACGAAAGGTCACACGG
ACGCTGAAAAGATTTTTGTGATAGTGGAGTTTGAATGCGAATGGTGCAGCCCTTCGGCTGCTGGCTGTTCGCTTCATCTC
CGTCTCTTCGTTTCACCTTCCGTCGATGCCCTCTCGTCTCTCTCTCCTCTCCAGATATGCACACCAGAAGATCCTCTTCC
TCTCGTCACAAAAGTTCCTGAGCATTGCGCTGTTGCTACGATCTTCCCTATCCCGGCTTGCGGTGTGCACCGCAGGTTGG
GACAGTAGGTCCGAAACCACACCTCTTTGAGTCCTGTACGAGAGAAGGGTTATAAGGCTTTTGGGGAGCGCTCTGCGCGA
CTACTGACCGGTTCATCACGAACACCGACGACCACTTCCCCAACAACGACTTCTTCCCCGACGTCGACAACCTCTTCGAT
GACATGGCTGGTAAGGATGTCGACCCCAAGTCCAGTGCTTCTGCTCCTGCTGCTGTCCCGTACGTGTTCTTGTTTTTTCT
GTTAGAGGTCCTGCCACACTTCCTTGTTCTAGTGTTTGCCCTAGATATGTTTGATTACAGTTCATATATGCAGATGCTAT
TTACCTTCTCTCTATCAGATCGCATGACTTGTTTTATCTCTGCTAAATTAGTCATGCTTTATCTATTATCTCTTAATAAA
ATCATTCGGTAAATTGCTCATATTTTCAACAGTAATGTCGCAAGAAAAGTGCC-AAAAATAATGCTTCATTCTTCCCCCT
CCGCCCTTGTGTTGGTTTCAACTATTACTAGATTTTATTGGTGATGCATGTTG-CCCGTCCATCCATTTTGACAATAGAA
TGATAGGAA-TT-GTAAATATGCGTGACATTTAGCCAGTATACTTTACTCATAAGCTCATAATTTAAACCTCGATGTATT
CTAGAAATCCCTTTAACCAAACTACAGATCTAGACAAAGCTACGGGATATGCCTAGCTTGAATATTTATAGAATTGTAGC
ACTTTTCTGACTGCTTGAAACAAATTTCAAAACTTCTATAGGAATCTAGCCATAAATTTATAATTGATGAGCATGAATTA
GCCTGACGCTGATCCTTGATTGCTTATAAATTTAAAATTTATTAGAAAATATTCAAGCTAGGCATCGTTTG-CCCCTGCT
AGGCTGTTTCCCTCGGGCGAGAGAGGTACATACGCGTGCGCGGCACTGCGTGTGAGCGTCGGTTGCGCCCGACCTGCTGT
CTATTCCCCTCGCCTTGCATGTGCCGCAGCGTGTGTCCTTCCTGAACCCTATA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr1B_828
TAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------AATAAAATATCTCAGCTCACGAGTCACGACCAAATGCGAGCAACCATCA
AGTGCTCCGCCACCGGAAAAGAAACCGAGCGGGTTATCCAGATCTCTCGTGTCGTCGTGGCTTATTCTTCCGCCACCCAC
CCATCCCGCGTCCGCTGCCGAGTATAGTGAGTAGAGATGAAATGCCGCCGCCGTCGATGGTGCTGCAGCTCCCACGGCTG
GGCCGATTCGCCGGAGTAACGGCGGCACCTGCATTCCAAGACGGAGCCCGCAACTTGAATTCCCATGGGTGCCACAGCAG
CCGGCGCTCCTCCTCGTCCAGCAGCAGAAGCAGCAGCTGGTTCTCCTCCAACGCCGAGAATCCCGGCCCCGACACCAGAG
ACGATAACAGGACTAGTAGTAGGAGGTGGTGGTCCGATGACCAATTCGACGTGGAGGAGGAGGAGGAGGAGGA---ATTC
GGGAGCGAGGGCTCGTTTGGTTCTGCAAGGGAGATGTTCGACGAGCCATGGTTTACCAAGGTACTTGCTCATGCTCAGAT
TTCCTCGCGGTAATTTACTCAGATGTGTCATGTGTGTGGTAACTACAACTGGAGTAGTATTATCTATGGCGGCAGGTGTT
CAGGGTGTACGGGTATGTGCTCCCGGTGCTGCTGGCGTCCATGCTGGTGACAACGGGGCCACAGGCTTTCCTCATGGCCA
TGGCCATCCCGCTCGCCCAGTCCGTTCTCTCTTTCGCCATTTCCAAGATTGGTTCATTTGGCCGGCGCCGCCGTGACGAA
GAAGAATATGACGACGATGGTTACTATTATTCCGATTACGGCAGCGGCGGCTGGGAAGCTGAAGAACAGTATAGCAGCAA
CTCC---TCGACATACAGAGGA---GACAGCAGCACTAGTAGCAGCAGGTACCAGCAGCAGCAACAGGAGGAATCTGCAG
ATTCAGATCCAACGGTAGAATCAGGTGATATTGACGGTACCACCGGCGCCGCAGCTAGAAGTGAAAGT------------
------------------GGTAATATCGGTTTTGGAGGATGGGACGAGCTGGAAGAAGGCGACGACCGCCGCCGCAGCAG
CAGGTGGCGTGCACGAGCGTCGCCGGCGGATACTGCTACCGCTGGTGGTGCAGTGAGAACGAGTAGACCACCTGCAACTA
GAAGGAGAAGAAGCAGAGGAGCTGCGGCTGCAAGGTACAGGCAGGCGCCCCTGCCGATGCGCTTGCTCGTCGCGCTCTTC
CCATTCCTGGGTTCATGGTTCAGAATTTTGCTCTAATTCCATAAATTAGGGTCAATTCCTCCACGAAGAATATTTATCGT
T-------------------------------------------CGATCCTCACGATCGAGTGTGTGTATTACCATTTGT
TTTTTGAAACAGATGTA-------TTACCAGTA---TAATTTTTTAGAAAGAATATGTTCCTGCTAGAAAAACGAGGCAG
TAATTGCTGAAATTTAGTCTATTTTGGGACAGCCCAATAATTATTTCAAAAATTCCTAATAAATTCTAGATGCTCACTTA
GACCATTCGTGCAAGGCAAGGGATACTATTAAAGTTTAGTCTCACATTGCTAGTTTAATAGGAGTTGGACCTCCTTATAA
AGAAGGTTCTTTCCCCACTTGTATGAGCATAAGAACAAGAGGGACATGCACGCGCGCTCCTCCTCCCCCACAGCCCGCCT
CGGCACGACGCGTCGCGCCGCGAGCCGAGCCGATGTCTAAATTTTTGCCAGGCATGACGGGTATACGAAAGGTCACACGG
ACGCTGAAAAGATTTTTGTGATAGTGGAGTTTGAATGCGAATGGTGCAGCCCTTCGGCTGCTGGCTGTTCGCTTCATCTC
CGTCTCTTCGTTTCACCTTCCGTCGATGCCCTCTCGTCTCTCTCTCCTCTCCAGATATGCACACCAGAAGATCCTCTTCC
TCTCGTCACAAAAGTTCCTGAGCATTGCGCTGTTGCTACGATCTTCCCTATCCCGGCTTGCGGTGTGCACCGCAGGTTGG
GACAGTAGGTCCGAAACCACACCTCTTTGAGTCCTGTACGAGAGAAGGGTTATAAGGCTTTTGGGGAGCGCTCTGCGCGA
CTACTGACCGGTTCATCACGAACACCGACGACCACTTCCCCAACAACGACTTCTTCCCCGACGTCGACAACCTCTTCGAT
GACATGGCTGGTAAGGATGTCGACCCCAAGTCCAGTGCTTCTGCTCCTGCTGCTGTCCCGTACGTGTTCTTGTTTTTTCT
GTTAGAGGTCCTGCCACACTTCCTTGTTCTAGTGTTTGCCCTAGATATGTTTGATTACAGTTCATATATACAGATGCTAT
TTACCTTCTCTCTATCAGATCGCATGACTTGTTTTATCTCTGCTAAATTAGTCATGCTTTATCTAGTATCTCTTAATAAA
ATCATTCGGTAAATTGCTCATATTTTCAACAGTAATGTCCCAAGAAAAGTGCC-AAAAATAATGCTTCATTCTTCCCCCT
CCGCCCTTGTGTTGGTTTCAACTATTACTAGATTTTATTGGTGATGCATGTTG-CCCGTCCATCCATTTTGACAATAGAA
TGATAGGAA-TT-GTAAATATGCGTGACATTTAGCCAGTATACTTTACTCATAAGCTCGTAATTTAAACCTCGATGTATT
CTAGAAATCCCTTTAACCAAACTACAGATCTAGACAAAGCTACGGGATATGCCTAGCTTGAATATTTATAGAATTGTAGC
ACTTTTCTGACTGCTTGAAACAAATTTCAAAACTTCTATAGGAATCTAGCCATAAATTTATAATTGATGAGCATGAATTA
GCCTGACGCTGATCCTTGATTGCTTATAAATTTAAAATTTATTAGAAAATATTCAAGCTAGGCATCGTTTG-CCCCTGCT
AGGCTGTTTCCCTCGGGCGAGACAGGTACATACGCGTGCGCGGCACTGCGTGTGAGCGTCGGTTGCGCCCGACCTGCTGT
CTATTCCCCTCGCCTTGCATGTGCCGCAGCGTGTGTCCTTCCTGAACCCTATA---------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr1A_862
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------AAATGCGAGCAACCATCA
AGCGCTCCACCACCGGAAAAGAAACCGAGCGGGTTATCCACATCTCTCGTGTCGTCGTGGCTTATTCTTCCGCCACCCAC
CCATCCCACGTCCGCTGCCGAGTATAGTGGGTAGAGATGAAATGCGGCCGTCGTCGATGGTGCTGCAGCTCCCACGGCTG
GGACGAGTCGCCGGAGTAACGGCGGCACCTGCATCCAAAGCCGGGCCCCGCAAATTGAATTCCCATGGGTGCCGCAGCAG
CCGGCGCTCCCCCTCGTCCAGCAGCAGAAGCAGCAGCTGGTTCTCCTCCAACGCCGAGAATCCCGGCCCCGACACCAGAG
ACGGTAACAGGACTAGTAGTAGGAGGTGGTGGTCCGACGACCAATTCGACGTGGAGGAGGAGGAGGAGGAGGA---ATTC
GGGAGCGAGGGCTCGTTTGGTTCTGCAAGGGAGATGTTCGACGAGCCATGGTTTACCAAGGTACTTGCTCATGCTCAGAT
TTCCTCGCGGTAATTTACTCAGATGTGTCATGTGTGTGGTAACTGCAACTGGAGTAGTATTCTC--TGGCGGCAGGTCTT
CAGGGTGTACGGGTATGTGCTCCCGGTGCTGCTGGCTTCCATGCTGGTGACAACGCGGCCACAGGCTTTCCTCATGGCCA
TGGCCATCCCGCTCGCCCAGTCCGTTCTCTCCTTCGCCATTTCCAAGATTGGTTCATTTGGGCGGCGCCGCCGTGACGAA
GAAGAATATGACGACGATGGTTATTATTATTCCGATTACGGCAGCGGCGGCTGGGAAGCTGAAGAACAGTATAGAAGCAA
CTCCTCATCGACGTACAGAGGA---GACAGCAGCACTACTAGCAGCAGGTACCAGCAGCAGCAACAGGAG---TCTGCAG
ATTCACATCCAACGGCAGAACCAGGTGATATTAACGGTACCACCGGCACAGCAACTAGAAGTGAAAGT------------
------------------GGTAGTATCAGTTTTGGGGGATGGGACGAGCTGGAAGAAGGCGACGACCGCCGCCGCAGCAG
CAGGTGGAGTGCAGGAGCGTCGCCGGTGGATACTGCTACCGCTGGCGGTGCAGTGGGAACGAGTAGACCACCTGCAACTA
GAAGGAGAAGAAGCAGAGGAGCTGCAGCTGCAAGGTACAGGCAGGCGCCCCTGCCGATGCGCTTGCTCATCGCGCTCTTC
CCATTCCTGGGTTCATGGTTCAGAATTATGCTCTAATTCCATAAATTAGAGTCAATCCCTCCACGAAGAATATTTATCGT
TGTTTCTCGTCCAGGTGTATACCAATGTGTATGCATAACTAGATCGATCCTCACGATCCAGTGTGTGTATTACCATTTGT
TTTTTGAAACAGATGTACTCCATATTACCAGTATAGTAATTTTTTAGAAAGAATA----------------ACGAGGCAG
TAAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GTCTCAAGAAAAGCGCTCAAAAAATAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chrUn_1381
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------GATGTGTCATGTGTGTGGTAACTACAACTGGAGTAGTATTATCTATGGCGGCAGGTGTT
CAGGGTGTACGGGTATGTGCTCCCGGTGCTGCTGGCGTCCATGCTGGTGACAACGGGGCCACAGGCTTTCCTCATGGCCA
TGGCCATCCCGCTCGCCCAGTCCGTTCTCTCTTTCGCCATTTCCAAGATTGGTTCATTTGGCCGGCGCCGCCGTGACGAA
GAAGAATATGACGACGATGGTTACTATTATTCCGATTACGGCAGCGGCGGCTGGGAAGCTGAAGAACAGTATAGCAGCAA
CTCC---TCGACATACAGAGGA---GACAGCAGCACTAGTAGCAGCAGGTACCAGCAGCAGCAACAGGAGGAATCTGCAG
ATTCAGATCCAACGGTAGAATCAGGTGATATTGACGGTACCACCGGCGCCGCAGCTAGAAGTGAAAGT------------
------------------GGTAATATCGGTTTTGGAGGATGGGACGAGCTGGAAGAAGGCGACGACCGCCGCAGCAGCAG
CAGGTGGCGTGCACGAGCGTCGCCGGCGGATACTGCTACCGCTGGTGGTGCAGTGAGAACGAGTAGACCACCTGCAACTA
GAAGGAGAAGAAGCAGAGGAGCTGCGGCTGCAAGGTACAGGCAGGCGCCCCTGCCGATGCGCTTGCTCGTCGCGCTCTTC
CCATTCCTGGGTTCATGGTTCAGAATTTTGCTCTAATTCCATAAATTAGGGTCAATTCCTCCACGAAGAATATTTATCGT
T-------------------------------------------CGATCCTCACGATCGAGTGTGTGTATTACCATTTGT
TTTTTGAAACAGATGTA-------TTACCAGTA---TAATTTTTTAGAAAGAATATGTTCCTGCTAGAAAAACGAGGCAG
TAAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr1A_2299
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------CG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AAAAATAATGCTTCATGCTTCCCCCT
CCGCCCTTGTGTTGCCCCGCCATCCATGTTGACAATAGAATGATATGGATTTCAC----CCATTCATTTTGACAATAGAA
TGATAAGAATTT-GTAAATATGCGTGACATTTAGCCAT--TACTTTACTCATAAGCTCATAATTTAAACCTCGATGTATT
CTGGAAATCACTTCAAACAAACTAGAGATCTAGACCAAGCTACGTGATATGCCTAGCTTGAATATTTATGGAACTGTAAA
ACCTTTCTGACTGCTTGAAACAAATTTCAAAACTTCTATAGAAATCTAGCCATGAATTTATAATTGATGAGTATGAACTA
GTCTGACGCAGATCCTTGGTCGCATA--AATTTAAGATTTATTAGAAAATATTCAAGCTAGGCATCGTTCGCCCCCTGCT
AGGCTGTTTCGCTCGGGCGAGACAGGTACATGCGCGTGCCCGGCACGGCGTGTGAGCGTTGGTTGCACCCGGCCTGCTGT
CCGTTCCCCTCGCCTTGCATGTGCCGCCGTGTGCGTCCTTCCTGGACCCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>SNPs
-------------S-S------------------S------------S-------S------------------------
-----------S---------------------------S----------------------------------S-----
--------------------------------------------------------------------------------
---S-----------S--------------------------------------S-------------------------
----------------------------S--------------S----------S-------------------------
----------------S-----S----------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
--------------------------------------------------------------------------------
---S------------------------S-----------S---------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SSS----
--------------------------------------------------------------------------------
---------------------------S--------S-------------------------------------------
------------------------------------------------------S-----------------------S-
---------------S-----------------------------------S---S------------------------
--------------------------------------------------------------------S-----------
---S--S--S------------SSS------------S----------------------------------S-------
----------------------S---------------------------------------------------------
-------------------------------------------------------------S----------------S-
-----S---------S-S-----------S------------------------------------------S-------
----------------------------S--------------S------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------S---S----S--------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------------------------------------S---------------------------------------
---------------S------------------------------------------------S---------------
---S---------SS-----------------------------------------------------------------
-----------S----------------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_705
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GAGTTGTCCTACGTGGCACA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_1703
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGAGACAGCAGCACTGGTAG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_786
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TGGGTGAGTTGTCTAACGCC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_3764
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTGTTTCCCTGAGGCGAGAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
