>input_sequence_61157
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------------------------------------------------ATGGCAAGTGCATGGGACGCGACCTT------
--------CTCCCCAAGATCGATCGATCGATATACAGTTCCCTCCTCGGCTCGATCAGCTCGTTCTCCGTCCATCTTCTT
CTCCCCTCCGTTCTCGATGGCCGTCGTTTGTGCCCAAGCCGTCGACTCTTGGCCCATCTGGAACCTCCAAGGCTACGGGG
TCGA------------------------GGACTGCGAGGAGACGCCCATCTGGGAACTCGACGACTGCGAGGAGACGGCC
GAGCTCGGCTCCGGGAGCTTCGGCACAGTCACCAAGGCGTGGTCCTACAAGACCGGCGAGAGCGTCGCCATCAAGACCCT
CGGCTCGAGCAGCCATGACGCGGTCCGGCGGGAGGCCGACCTCCTCAGGGCGTGCCATGGCCACCTCAACATCGTCCAGC
TGCGGGACATGTCCTTCGACCGCAACGCCGACAGGCTCTCCCTCGTCATGGAGTACGTCGGGCCGAGCCTCCACGACGTC
CTCCACCGCGCCCGCCGCGGCTGCCCGTTCCAGGAGGACGTCGTGCGCTTCCTCATGCGGCAGCTTCTGAGCGGCGCCGA
CCACATGCACCGGCTGTGCCACGTCGTCCACCGGGACATCAAGCCCGAGAACGTCCTCGTCGGCGACGGCGTCAAGATAT
GCGACTTCGGGCTCGCCATGTCCATGTCCCAGGCCCCGCCGTACGGCCACCGTGGCACCCGCAGCTACATGGCGCCGGAG
ATCCTCCTGGGGAAGCCCGACTACGACGCCACCGTGGACGCCTGGTCGCTGGGCTGCGTCATGGCCGAGCTCCTCCTAGG
CGAGCGGCTCTTTGGCCGCGCGGCGGACGACGCCGACCAGCTCCTCAGGATCTTCTACGTACTAGGCGTGCCGGACCAGA
TCTCCTGGCCGTCCTACAACTCCATGCCGCTGGCCGGCGAGCTGGTGGCGCCGCCGAGCATCCCCCACCGCAACAGGCTG
CGCGAGGTGTTTCCAGAGGACTGCCTGTCCAGACAAGGTTTCCAAGTATTGAGCGGCCTCCTCTCCTGCGACGCAGGCAA
GAGGCTGTCGGCGGCTGACGCCCTCGAGCTTCCATGGTTCACCACCAACTAG----------------------------
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>chr3A_1_TraesCS3A01G247700
CGTCCATGAACTGGAAGGAGGCTGTGCCGGTGCGCGTGTCCGCCGTACTCGGAGAGTAGCGCATCATGGGGCGTTTGGTT
CAGGCACGGGGAACTGCAACGCGCTCCAGTCCTCCAGCTCTCGGTACACCACAATATCAAAGGAACACAACGCGGTGGAG
CGGCGACGGTGTCGCGCCGTGCGTAAGGCGGCAGAGCAACGCCGGTGCTTGAACTGTGTCACTGGCGATCACCATGCCCA
GCAGCCACCATCGTGGACTACGTGCATGCACAGAAACAGATAACCACGCAGCGGAGCAGCGATGGTGCTGGAACTGCGTC
ACCCGCGATCAATCCGGCCACCGTCGTGGACTCCTCAACATCTTAGGCCTCGTCACGGGCTCACGGCAAGCCTCACGGTC
TTGCCTAGGATAACCCCCTGTCGCCAGGAGCAAGTGAGGTGCTAGAGCTACCGCAGTGGCGAGACCGGCTCGGCGGCCGC
CGACCCAGCCGCAGACTTTGAGCGCACGGATGACGAAGCATGTCTGGCGTCCGGCGTCCGCGTCGACCCGCCGGATGCAC
CATCGTCTTCGCTACAACTCACTGGAATGGCGAATCTGAGGACAACGATACCCAGGATATGTTAATCCCGTTTTTGCAAA
AACGACTAATAGTCGTTTTCCCGTAAACTCAAAATCCTGGGTTTTGGAGAACCAGGTTTTCTATATCCACGGGTTTGTTA
GATGATCCAAACAAGATTTTATTCTGTTAGAGCCGTTTCCTTGTTTATAGAGAACCGGTTTTGTATATTTCCCTTATCCA
AACAACCCCTCAACATGGGGAGTCCTTAGTTCCTTACTGAGCCAGGTAAGGGTAGGGGTCTAACACCGCCTTCCGATGCC
GAAGGAACCGACACGCGCTATTACGTGTTCTTTCCTTCGACCGGGACGAGGAATCCGAGCGCCAGCCTTGTACCCCGCCA
GTCCGATAACGACTCCAAACTTGCCTCTTCAC--------TAGTAGACATGGCAAGTGCATGGGACGCGACCTT------
--------CTCCCCAAGATCGATCGATCGATATACAGTTCCCTCCTCGGCTCGATCAGCTCGTTCTCCGTCCATCTTCTT
CTCCCCTCCGTTCTCGATGGCCGTCGTTTGTGCCCAAGCCGTCGACTCTTGGCCCATCTGGAACCTCCAAGGCTACGGGG
TCGA------------------------GGACTGCGAGGAGACGCCCATCTGGGAACTCGACGACTGCGAGGAGACGGCC
GAGCTCGGCTCCGGGAGCTTCGGCACAGTCACCAAGGCGTGGTCCTACAAGACCGGCGAGAGCGTCGCCATCAAGACCCT
CGGCTCGAGCAGCCATGACGCGGTCCGGCGGGAGGCCGACCTCCTCAGGGCGTGCCATGGCCACCTCAACATCGTCCAGC
TGCGGGACATGTCCTTCGACCGCAACGCCGACAGGCTCTCCCTCGTCATGGAGTACGTCGGGCCGAGCCTCCACGACGTC
CTCCACCGCGCCCGCCGCGGCTGCCCGTTCCAGGAGGACGTCGTGCGCTTCCTCATGCGGCAGCTTCTGAGCGGCGCCGA
CCACATGCACCGGCTGTGCCACGTCGTCCACCGGGACATCAAGCCCGAGAACGTCCTCGTCGGCGACGGCGTCAAGATAT
GCGACTTCGGGCTCGCCATGTCCATGTCCCAGGCCCCGCCGTACGGCCACCGTGGCACCCGCAGCTACATGGCGCCGGAG
ATCCTCCTGGGGAAGCCCGACTACGACGCCACCGTGGACGCCTGGTCGCTGGGCTGCGTCATGGCCGAGCTCCTCCTAGG
CGAGCGGCTCTTTGGCCGCGCGGCGGACGACGCCGACCAGCTCCTCAGGATCTTCTACGTACTAGGCGTGCCGGACCAGA
TCTCCTGGCCGTCCTACAACTCCATGCCGCTGGCCGGCGAGCTGGTGGCGCCGCCGAGCATCCCCCACCGCAACAGGCTG
CGCGAGGTGTTTCCAGAGGACTGCCTGTCCAGACAAGGTTTCCAAGTATTGAGCGGCCTCCTCTCCTGCGACGCAGGCAA
GAGGCTGTCGGCGGCTGACGCCCTCGAGCTTCCATGGTTCACCACCAACTAGACAGGACGACGCTCCGGAAACTCTGATT
TGATAGCGTGCACAC-AACGTTCTTGTGTCCACATACAATGTAATGTAAGGTTCGACTGCAATATTTCTGCAGTTCTGCT
GTCTGAGTTTAGTTGTAAGGAAATTGTCGACTTACGTTCAGAC-AAAAAACCTGTGCTCGTTACTTCAGTAGTACTCCCT
CCGTCCTTTAAAGAGTGTACTTCCAACTTTGTTGGAGGGTCAAACTATCTCAATATTTGACCGAGTTTGTGCAAAAATAT
ATCAATGTTTATGAAACCAAATAGGTATATGATGAAAATATATTTTATCATGAATCTAATGCTACTAATTTGATGGCATA
AATGTTGGTGCATTATTGTATAAATACGGTCAAACATAAAAATGTTTTGACTTTCCAACTTAGTTGGAAGTACACTCTTC
AAAGGACGGAGGGAGTACATCAATACGAAGTGCGACCATGTTGGTACAATTGAATGATTTTGTATCCACAAGCCGGAGTT
GCGTGCACGGGAGCTGAAGTTCGTGTGGGTTCCAGACTTCATTTTTCAGAAGAACTGGGAGGCTTCATTGCAACCAACCA
AGTCACAGAATCCAAATTTGGTTTCGGCTTTGCTATTCATCGGTTGTCTGAAATTGAAATTTGGTTCCATCGATTTTGCA
TGAAACCCCGAGGTCGAAGACAGGTAAATTTCAATTCTCTCGTGAATCGAGTGACAACAACAAAAAAAAGAACAGGCAAC
TGACAAATAAGCATCTTCAGACTCCATCAACATTCCAGGTGTGGCCGGCGATGCCGGTGTTATTTTTCTTCATCAAGTTT
GTAATAGCTCGTAGAGTGCATCTTTTTGGAAGTTGGTCTGATTGTTTTTAAATTTACCAATTCCACGTACTAGTTGTTTT
TAGGCAAACGAAGCTTAGGACCGTTATTAGGACCAAACAGATCAGATCAGAACACCCCGCTGCAAGTTCTCTAAATCCTG
AACACCCAGCGAAC
>chr3D_828
AGTTC---------------------------------------------------------------------------
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---------------------------------TTGCTGAGCCAGGTAAGGG-----GTCTAACACCGCCTTCCAATGCC
GAAGGAACCGACACGCGCGATTACGCGTTCTTTCCTTCTACC-GGACGAGGAATCCGAGTGCCAGCCTTGTACCCCGCCA
GTCCGATAACGACTCCAAACTTGCCTCTTCAATACTACAGTAGTATACATGGGAAGTGCATGGGAGGC---CTTCTCCCC
TCTCACGCCTCCCCAAGA----TCGATCGATATACAGTTCCCTCCTCGGCTCGATCAGCTCGTTCTCCGTCCATCTTCTT
CTCCCCTCCGTTCTCGATGGCCATCGTTTGTGCCCAAGCCGTCGACTCTTGGCCCATCTGGAACCTCCAAGGCTGCGGGG
TCGAGGAGATGCCCACCTGGGACCACGAGGACTGCGAGGAGACGCCCATCTGGGAACTCGACGACTGCGTGGAGACGGCC
GAGCTCGGCTCCGGGAGCTTCGGCACAGTCACCAAGGCGTGGTCCTACAAGACCGGCGAGAGCGTCGCCATCAAGACCCT
CAGCTCGAGCAGCCATGAGGCGGTCCGGCGGGAGGCCGGCCTCCTCAGGGCGTGCCATGGCCACCTCAACATCGTCCAGC
TGCGGGCCATGTCCTTCGACCGCAACGCCGACAGGCTCTCCCTCGTGATGGAGTACGTCGGGCCGAGCCTCCACGACGTC
CTCCACCGCGCCCGCCGCGGCTGCCCGTTCCAGGAGGACGTCGTGCGCTTCCTCATGCGGCAGCTTCTGAGCGGCGCCGA
CCACATGCACCGGCTGTGCCACGTCGTCCACCGGGACATCAAGCCCGAGAACGTCCTCGTCGGCGACGGCGTCAAGATAT
GCGACTTCGGCCTCGCCATGTCCATGTCCCAGGCCCCGCCGTACGGCCACCATGGCACGCGCAGCTACATGGCGCCGGAG
ATCCTCCTGGGGAAGCCCGACTACGACGCCACCGTGGACGCCTGGTCGCTGGGCTGCGTCATGGCCGAGCTCCTCCTAGG
CGAGCGGCTCTTTGGCCGCGCGGCGGACGACGCCGACCAGCTCCTCAGGATCTTCTACATACTTGGCGTGCCGGACCAGG
TCTCCTGGCCGTCCTACAACTCCTTGCCGCTCGCCGGCGAGCTGGTGGCGCCGCCGAGCATCCCCCACCGCAACAGGCTG
CGCGAGGTGTTTCCAGAGGACTGCCTGTCCAGACAAGGCTTCCAAGTATTGAGCGGCCTCCTCTCCTGCGACGCACGCAA
GAGGCTGTATGCGGGTGAAGCCCTCGAGCTTCCATGGTTCACCACCAACTAGATAGGACCACGCTCCGGAAACTTTGATT
TGATAGCGTGCCGACAAACGTTCTTGTGTCGACAGACA----------------GACTGCAATATTTCTGTAGCTGTGCT
GTCTGAGTTTGTTTGTAAGG-AATTGTCGACGTTCGTTCGGGTAAAAAAACTTGTGCTCGTTACTTCA------------
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>chr3B_862
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-------------------------------------------------------------AACACCGCCTTCCAGTGCC
GAAGCAACCGACACGCGCTATTACGTGTTCTTTCCTTAGACCGGGATGAGGAATCCGAGTGCCAACCTTGTACCCCGCCA
GTCCGATAACAACTCCAA-CTTGCCTCTTCAATACG--AGTAGTATACATGGGAAGTGCATGCGATGCGACCTTCTCCCC
TCTCACGCCTCCCCAAGATCGATCGATCGATATACAGTTCCCTCCTCGGCTCGATCAACTCGTTCTCTGTCCA---TCTT
CTCCCCTCCGTTCTCGATGGCCGTCGTTTGTGCCCAAGCCGTCGACTCTTGGCCCATCTGGAACCTTCAAGGCTACGGGG
TCGAGGAGACGCCTATCTGGGACCACGTGGACTGCGAGGAGACGCCCATCTGGGACCTCGACGACTGCGTGGAGACGGCC
GAGCTCGGCTCCGGGACCTTCGGCACAGTCACCAAGGCGTGGTCCTACAAGACCGGCGAGAGCGTCGCCATCAAGACCCT
CAGCTCGAGCAGCCATGACGCGGTCTGGCGGGAGGCCGACCTCCTCAGGGCGTGCCATGGCCACCTCAACATCGTCCAGC
TGCGGGCCATGTCCTTCGACCGCAGCGCCGACAGGCTCTCCCTCGTGATGGAGTACGTCGGGCCAAGCCTCCACGACGTC
CTCCACCGCGCCCGCCGCGGCTGCCCGTTCCAGGAGGATGTGGTGCGCTACCTCATGCGGCAGCTTCTGAGCGGCGCCGA
CCACATGCACCGGCTGTGCCACGTCGTCCACCGGGACATCAAGCCCGAGAACGTCCTCATCGGCGACGGCGTCAAGATAT
GCGACTTCGGGCTCGCCATGCACATGTCCCAGTCCCCGCCGTACGGCCACCATGGCACGCGCAGCTACATGGCGCCGGAG
ATCCTCCTGGGGAAGCCCGACTACGACGCCACCGTGGACGCCTGGTCGCTGGGCTGCGTCATGGCCGAGCTCCTCCTAGG
CGAGAGGCTCTTTGGCCGCGCGGCGGACGACGCCGACCAGCTCCTCAGGATCTTCTACATACTTGGCGTGCCGGACCAGA
TCTCCTGGCCGTCCTACAACTCCATGCCGCTCGCCGGCGAGCTGGTGGCGCCGCCGAGCATCCCCCACCGCAACAGGCTG
CGCGAGGTGTTTCCAGAGGACTGCCTGTCCAGACAAGGCTTCCAAGTATTGAGCGGCCTCCTCTCCTGCGACGCAGGCAA
GAGGCTGTCGGCGGCTGACGCCCTCGAGCTTCCATGGTTCACCTCCAACTAGATAGGGCGACGCTCCGGAAACTCTGATA
TGATAGCGTGC---------------------------------------------------------------------
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>SNPs
S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------SSSSS-----------------S-----
-----------------------------------------------------------S--------------------
-------------------------------S-------------S------S------------S--------------
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-S------------------------------------------------------------------------------
------S---------------------------------------S---------------------------------
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---------------------------------------------------S------S---------------------
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----------------------------------------------------------S----S----------------
-------------------------------S------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------------S--------------------------
-----------SS-----------------S---S---SSSSSSSSSSSSSSSS----------------S--S-S----
----------SS--------S----------S-S-----S-SS--------S----------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_608
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----------------------------GGCGAATCTGAGGACAACGA--------------------------------
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>reverse_2652
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-----------AGCTGAAGTTCGTGTGGGTT-------------------------------------------------
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