>input_sequence_61117
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--------------------ATGATGCGCGGGAAGGATCAGAGGCCCGCGGCATTCTCCCCGATGAGGGAGTCGGTGGCG
GCGGCGGTGCAGGAGGAGGTGTGGGAGGTCCGGCCCAGCGGCATGCTGGTGCAGAAGCGCACCCCGGACTCGGACCCGCC
CCCCGGCGGCGCGCCCGTCCCCACCATCCGCGTCAAGGTCAAGTACGCCGGCGTGTACCACGAGGTGTACATCAACTCCC
AGGCCTCCTTCGGGGAGCTCAAGAAGCTCATGTCCGAGAAGACGGGGCTGCACCCGGACGACCAGAAGGTGGTGTACAAG
GACAGGGAGCGCGACTCCAAGGCCTTCCTCGACATGGTCGGCGTCAAGGACCGCTCCAAGATGACGCTGCTCGAGGACCC
CACCGCCCAGGCCAAGCGCCTCATCGAGGAGCGCCGGAATGCCAAGGCCCAGCGCGCCGCCAAGGCCGTCTCGCGCGTCA
GCCTCGACGTCGACAAGCTCGCGTCCAAGGTGAGCTTCTTTTCTTTACCGCT----CCTCCTCCATATTCGTTGATATTC
ATGGATGGCCGGCGCT-----TCCGTGGGCGATTGAGTTCATGAGTTGACTTGGCTGGCGTGCGTGCGCGGCAGGTGTCG
GCGCTGGAGACGATCGTTAGCAAGGGCGGCAAGGTGGTGGAGGCCGACCTGGTCACGCTCACCGAGGCGCTGATGAGCGA
GCTGCTCAAGCTAGACGCCATCGTCGCCGAGGGCGACGTCAAGGACCAGCGGCGGATCCAGGAGAAGCGGGTGCAGAAGA
ACGTGGAGACGCTGGACGCCATCCGCGCCAAGACGGCCAAGAGAAACAACACATCTGCTGCAACGGCCAATAAGGCCCGG
GCGCCGCACCTGCCCCCTCGTCCGCCGCCGGCGCAGCAGCACCAGCAGCGCCGGCAGTTCCAGCCCGCTGCACCCACCAC
GGCGACCGCCCCCGCGCCGCAGACCGCGACGGCGAGCTGGGATACGTTCGACCTGCTGTCCTCCGCGCCCTCTTCTTCGT
CGTCAGCACCGGTGTCTACCATGGCGCTGGCGACCACCACCTCGCCGTCCCCGAGGTTCGAGTGGGAGCTCTTCTAG---
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>chr7D_1_TraesCS7D01G270100
CTTGGGCTGGATATATATACGCCACATTTCTGTAAACACCC----ACGTACGTACACCCACGTACACTCCAAGATTCACA
A-GGAGAAAAGACTTTACAATGGTGTGCACATGAAGCATGCATGCATATACCGATCCTTGGTGCCATATGA-AAAAATAT
G-TATATTCAATTGAAATCTGGTAGGTAGGAGGGGAACGAATAGGACCGGTGAGGTGGCGAGCTCCATCGCCTCAAGGAA
GCCAACAAAGAGGC----GGCCTGGCCTGGCTTTGCTTGGAGGCGAAGGCCGGCAACGATGGC---GAGGAGGAGGAGCA
GATGAGGAGATCCATCCATGGATCGAGCCGTCCAGAGCAAGCCAATTGCAACCAACCACCAACCCGAGCCACCCACCCGA
ACCCCTCACCAACCCGGAACGGACGCGTCCATCG-----ATCAAGCGTACGCACACAGAAACGCGCCACCTCAACCGCT-
----CCGCCCGCGCGCGGTTACTGTCTCTTCTCGTACTACTACCTCCTGTCCGGTCCTGCGCACCCAGCCCAGCCGCACG
ATCGATGACACTGATCACAGGGTGAAAA-----CCTGGCCGTAATTT-----CAGGCCAATTTACAGCCAGATCAGGTGC
GAATGTGCAATCCACAGATCTTGCCATTGTGTAGAGCCCCCACACCAACAGTTGTTTTATTGCGTGTTGCTCGCTTGCTT
CGTTTTTGTTTATCACTATAAATATTTCTCTGCTCCCCCTGCCACGCCCCGCCCTGTCTCTTACTATTAGTTGTACCCTG
TCCCTCCCTCCCACACAACCTGACACCCACTTGTTTCTTCTTCCTCCTCCTCCCCCTCTTGATTTCTCCAATTGGGCTCG
CAATTTTGGTTTCTCG---TAGCCTCTTCCTGCACAGCTGCTAGCACAT----------------AGAGAGAGAGCATCG
GTAGCAAATTGACTAGGCTAGGTAGATAGATTAGCCT-------CTGCGGCTCTGACCAGAGAACTATACAAGCTTGATT
AGGAGGAGATCGAAGCCAAGATGATGCGCGGGAAGGATCAGAGGCCCGCGGCATTCTCCCCGATGAGGGAGTCGGTGGCG
GCGGCGGTGCAGGAGGAGGTGTGGGAGGTCCGGCCCAGCGGCATGCTGGTGCAGAAGCGCACCCCGGACTCGGACCCGCC
CCCCGGCGGCGCGCCCGTCCCCACCATCCGCGTCAAGGTCAAGTACGCCGGCGTGTACCACGAGGTGTACATCAACTCCC
AGGCCTCCTTCGGGGAGCTCAAGAAGCTCATGTCCGAGAAGACGGGGCTGCACCCGGACGACCAGAAGGTGGTGTACAAG
GACAGGGAGCGCGACTCCAAGGCCTTCCTCGACATGGTCGGCGTCAAGGACCGCTCCAAGATGACGCTGCTCGAGGACCC
CACCGCCCAGGCCAAGCGCCTCATCGAGGAGCGCCGGAATGCCAAGGCCCAGCGCGCCGCCAAGGCCGTCTCGCGCGTCA
GCCTCGACGTCGACAAGCTCGCGTCCAAGGTGAGCTTCTTTTCTTTACCGCT----CCTCCTCCATATTCGTTGATATTC
ATGGATGGCCGGCGCT-----TCCGTGGGCGATTGAGTTCATGAGTTGACTTGGCTGGCGTGCGTGCGCGGCAGGTGTCG
GCGCTGGAGACGATCGTTAGCAAGGGCGGCAAGGTGGTGGAGGCCGACCTGGTCACGCTCACCGAGGCGCTGATGAGCGA
GCTGCTCAAGCTAGACGCCATCGTCGCCGAGGGCGACGTCAAGGACCAGCGGCGGATCCAGGAGAAGCGGGTGCAGAAGA
ACGTGGAGACGCTGGACGCCATCCGCGCCAAGACGGCCAAGAGAAACAACACATCTGCTGCAACGGCCAATAAGGCCCGG
GCGCCGCACCTGCCCCCTCGTCCGCCGCCGGCGCAGCAGCACCAGCAGCGCCGGCAGTTCCAGCCCGCTGCACCCACCAC
GGCGACCGCCCCCGCGCCGCAGACCGCGACGGCGAGCTGGGATACGTTCGACCTGCTGTCCTCCGCGCCCTCTTCTTCGT
CGTCAGCACCGGTGTCTACCATGGCGCTGGCGACCACCACCTCGCCGTCCCCGAGGTTCGAGTGGGAGCTCTTCTAGAGG
TCGGGACGGGCCCGCCCACCCGCCACATGCGTGTGGCCACACGTTCATTGGCTCGAT---------CAGCCTCGTCTCGG
TCATGGCGCGCGTCAACTGTCACATTGTTCCCTTCTT----------CTCTCTCCATTCTTTCCTTCCATCTTTGTTTTT
T-CTCTTTCGAGTGTATATTGATCTCCTCA-AAAAAGGCAACAGCTCCAGTGATATGATTGTGCCCAGCGACTCCCAAAT
CCCCACGAAGAAGAT-ACACACACTCATGATCTCTATGCATGCAT----CGGGTGTGCTATGCTGCAAATAAGTGGTGGC
CTTATGTTGATGAAGGTTCGGAATTTCCACGGCGAATTTGTGTATAGTATTGTACGGTG---TACATCAAATCATCAATT
TACCATTATATGTGCCTGTCTTATTCGTGAGGGATGTACTTCTACTATG----ATCCATCCAACATTGTACAAACAAATG
CTAG---CTGGTGTATTGATTCAAGAGGGAAAATGATGAT----------GGGGATTGATTAATTGCAGGTGCAAATGCA
GCACTGATTGACCAATCGGGTTTCAATTATTTAGGCATCTGCCAGGGCAGGGTAGTTAGCTTTGTCTCTTCAAAAGGTTC
CATTCACCACTACACTAGTCACTAGTGGTGGCTTTGTTTGTCCATCCCTTAATGTAGGA---TACCTTTTCTTCACCTCT
GGCTTCCTCCCC-TTTCTTCCATGCGGATGCGGCGTCCTCCAGTATATGCTGAATTTGTTGTGTCGGCATGACAGGCATC
ATTAGCTGTTGGGGACTCAGGGCTGATGAGATATACTCATATACATACATTTGTGTGCTTGGTAGTATAAGCTTGAAGCT
TC----CATGCTTTCCATGCATGTGGTTGCTAGGTCAGTGCGTGTTGGCTGTGATTGAATGGTACGGCAAAAACAACAAT
ACTCATACA------ACTATTATTACAGGCTGATTCCTTACAATGATCTTCTGGCATTAATGACCTGATCATTGCATACC
TTCATTCTGTTCCATGC
>chr7B_1
CTTGGACTGG--ATATATATGCCACATTTCTGTAAACACCCACGTACGTACGTACTCCCACGTACACTCCAAGATTCACA
AAGGAGAAAAGACTTTACAATGGTGTGCACATGAAGCATGCA----TATACCGATCCTTCGCGCCCTATGAAAAAAATAT
ACTATATTCAATTGAAATCTGGTAGGTAGGAGGGGAACGAATAGGACCGGTGAGGTGGCGAGCTCCATCGCCTCAAGGAA
GCCAACAAAGAGGC----GGCCTGGC-----TTTGCTTGGAGGCGAAGGCCGGCAACGATGGT---GAGGA---GGAGCA
GATGAGGAGATCCATCCATGGATCGAGCCGTCCAGAGCAAGCCAATTGCAACCAACCACCAACCCGAGCCACCCACCCGA
ACCCCTCACCAACCCGGAACGGACGCGTCCATCGCATCGATCAAGCGTACGCACGCAGAAACGCGCCACCTCAACCGCTC
GGCTCAGCCCGCGCGCGGTTACTGTCTCTTCTCG---TACTACCTCCTGTCCGGTCCTGCACACCCAGCCGTACGTCGAT
GCCACTGAT-CTGATCACAGGGTGAAAACCTGGCCTGGCCGTAATTT-----CAGGCCAATTTACAGCGAGATCAGGTGC
AAATGTGCAATTGACAGATCTTGGCATTGTGTAGAGCCCCCACACCAACAGTTGTTTTATTGCATGTTGCTCGCTTGCTT
CGTTTTTGTTTATCACTATAAATATTTCTCTGCTCCCCCTGCCACGCCCCGCCCTGTCTCTTA---TTAGTTGTACCCTG
TCCCTCCCTCCCACACAACCTGACACCCACTTGTTTCTTC------CTCCTCCCCCTCTTGATTTCTCCAATTGGGCTCG
CAATTTTGGTTTCTCG---TAGCCTCTTCCTGCACAGCTGCTAGCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATCG
GTAGCAAATTGACTAGGCTAGGTAGATAGATTAGCCT-------CTGCGGCTCTGACCAGAGAACTATACAAGCTTGATT
AGGAGGAGATCGAAGCCAAGATGATGCGCGGCAAGGATCAGAGGCCCGCGGCATTCTCCCCGATGAGGGAGTCGGTGGCG
GCGGCGGTGCAGGAGGAGGTGTGGGAGGTCCGGCCGAGCGGCATGCTGGTGCAGAAGCGCACCCCGGACTCGGACCCGCC
CCCCGGCGGCGCGCCCGTTCCCACCATCCGCGTCAAGGTCAAGTACGCCGGCGTGTACCACGAGGTGTACATCAACTCCC
AGGCCTCCTTCGGGGAGCTCAAGAAGCTCATGTCCGAGAAGACGGGGCTGCACCCGGACGACCAGAAGGTGGTGTACAAG
GACAGGGAGCGGGACTCCAAGGCCTTCCTCGACATGGTCGGCGTCAAGGACCGCTCCAAGATGACGCTGCTCGAGGACCC
CACCGCCCAGGCCAAGCGCCTCATCGAGGAGCGCCGGAATACCAAGGCCCAGCGCGCCGCCAAGGCCGTCTCGCGCGTCA
GCCTCGACCTCGACAAGCTCGCGTCCAAGGTGAGCTTCTTTTCTTTACCGCT----CCTCCTCCATATTTGTTGATATTC
ATGGATAGCCGGCGCTTT-----CGTGGGCGATTGAGTTCATGAGTTGACTTGGCTGGCGGTCCGT---GGCAGGTGTCG
GCGCTGGAGACGATCGTTAGCAAGGGCGGCAAGGTGGTGGAGGCCGACCTGGTCACGCTCACCGAGGCGCTGATGAGCGA
GCTGCTCAAGCTGGACGCCATCGTCGCCGAGGGCGACGTCAAGGACCAGCGGCGGATCCAGGAGAAGCGGGTGCAGAAGA
ACGTGGAGACGCTGGACGCCATCCGCGCCAAGACGACCAAGAAAAACACTACACCTGCCGCAACGGCCAATAAGGCCCGG
GCGCCGCACCTACCCCCTCGTCCGCCGCCGGCGCAGCAGCACCAGCAGCGCCGGCAGTTCCAGCCGGCTGCACCCACCAC
GGCGACCGCCCCCGCGCCGCAGACCGCGACGACGAACTGGGATACGTTCGACCTGCTGTCCTCCGCGCCCTCTTCTTCGT
CACCGGCGCCGGTGTCCACCATGGCGCTGGCGACCACCACCTCGCCGTCCCCGAGGTTCGAGTGGGAGCTCTTCTAGAGG
TTTGGACGGGCCCACCCACCAGCCACATGCGTGTACACGTTC-------------ATTGGCTCGGCCAGCCTCATCTCGG
TCATGGCGCGCGTCAACTGTCACATTGTTCCTTTTTCC---------CTCTCTCCATTCTTTCCTTCCATCTTTGTTTTT
TTCTCTTTCGAGTGTATATTGATCTCTTCAGAAAAAGGCAACAGCCCCAGCGATATGATTGTTCTCAGCGACTCCCAAAT
CCACACGAAGAAGAT-ACACACACTCATGATCTCTATGCATGCAT----CGGGTGTGTTGTGCTGCAAATAAGTGGTGGC
CTTATGTTGACGAAG-TTCGGAATTTCCACGGCAAAATTGTGTATAGTATTGTACAGTG---TACATCAAATCATCAATT
-ACCATTATATGTGCCTGTCTTATTCGTGAGGGATGTACTTCTACTATG----ATCCATCCAACATTGTACAAACAAATG
CTAGTAGCTGGTGTGTTGATTCAAGAGGAAGAGTGATGATGGAGATCAGCGGGGATTGATTAATTGCAGGTGCAAATACA
GCACTGATTGACCAATCGGGTTGCAATTATTTAGGCATCTGCCAGGGCAGGGTAGTTAGCTTTGTCTCTTCAAAAGGTTC
CATTCACTGCTACACTAGTCACTAGTGGTGGCTTTGTTTGTCCATCCCTTAATGTAGGA---TACCTTTTCTTCACCTCT
GGCTTCCTCTCCCTTTCTTCCA------TGCGGTGTCCTCTAGTATATGCTGAATTTGTTGTGTCGGCATGACAGGCATC
ATTAGCTGTTGGGAACTCAAGGCTGAGGAGAT------ATATACATATATTTGTGTGCTTGGTA-TATAAGGTTGAAGCT
TC----CATGCTTTCCATGCATGTGGTTGCTAGGTCAGTGCGTGTTAGCTGTGATTGAATGGTACGGCAAAAACAACAAT
ACTCAT--------TACTATTATTACAGGCTGATTCCTTACAATGATCTTCTGGCATTAATGACCTGATCATTGCATACC
TTCATTCTGTTCCATGC
>chr7A_36
-----------------------------------ACACCC----ACGTACGTACTCCCACGTACACTCCAAGATTCACA
A-GGAGAAAAGACTTTACAATGGTGTGCACATGAAGCATGCA----TATACCGATCCTTGGTGCCCTATGAAAAAAATAT
G-TATATTCAATTGAAATCTGGTAGGTAGGAGGAGAACGAATAGGAGCGGTGAGGTGGCGAGCTCCATCGCCTCAAGAAA
GCCAACAAAGAGGCGGCTGGCCTGGC-----TTTGCTTGGAGGCGAAGGCCGGCAACGACGGCGAGGAGGA---GGAGCA
GATGAGGAGATCCATCGATGGATGGAGCCGTCCAGAGCAAGCCAATTGCAACCAACCACCAACCCGAGCCACCCACCCGA
ACCCCTCACCAACCCGGAGCGGACGCGTC-----CATCGACCAAGCGTACGCACACAGAAACGCGCCACCTCAACCGCC-
----CAGCCCGCGCGCGA---------------G---TACCACCTCCTGTCCGGTCCTGCGCACCCAGCCCAGCCGTACG
ATCAATGACACTCATCACAGGGTGAAAA-----CCTGGGTATCCGTAATTTCCAGACCAATTTACAGCGAGATCAGGTGC
AAATGTGCAATTGCCAGATCTTG--------------CCCCACACCAACAGCTGTTTTATTGCATGTTGCTCGCTTGCTT
CGTTTTTGTTTATCACTATAAATATTTCTCTGCTCCCCCTGCCACGCCCCGCCCTGTCTCTTACTATTAGTTGTACCCTG
TCCCTCCCTCCCACACAACCTGACACCCACTTGCTTCTTCTTCCTCCCCCTCCTCCC---GATTTCTCGAATTGGGCTCG
CAATTTTGGTTCCTTGTATTAGCCTCTTCCTGCACAT------------------------------AGAGAGAGCATCG
ATAGCAAGCTGATTAGGCTAGGTAGATAGATTAGCTAGCCTCTGCTGCGGCTCTGACCAGAGAAGTATACAAGCTTGATT
GGGAGGAGATCGAAGCCAAGATGATGCGCGGGAAGGACCAGCGGCCCGCGGCATTCTCCCCGATGAGGGAGTCGGTGGCG
GCGGCGGTGCAGGAGGAGGTGTGGGAGGTCCGGCCCAGCGGCATGCTGGTGCAGAAGCGCACCCCGGACTCGGACCCGCC
CCCCGGCGGCGCGCCCGTCCCCACCATCCGCGTCAAGGTCAAGTACGCCGGCGTGTACCACGAGGTGTACATCAACTCCC
AGGCCTCCTTCGGGGAGCTCAAGAAGCTCATGTCAGAGAAGACGGGGCTGCACCCGGACGACCAGAAGGTGGTGTACAAG
GACAGGGAGCGCGACTCCAAGGCCTTCCTCGACATGGTCGGCGTCAAGGACCGCTCCAAGATGACGCTGCTCGAGGACCC
CACCGCCCAGGCCAAGCGCCTCATCGAAGAGCGCCGGAATGCCAAGGCCCAGCGCGCCGCCAAGGCCATCTCGCGCGTCA
GCCTCGACGTCGACAAGCTCGCCTCCAAGGTAACCTTCTTTTCTTTACCGCTAGCTCCTCCTCCATATTTGTTGATATTC
ATGGATGGCCGGCGCTTCCGTTCCATGGGCTGTTGAGTTGATATGGCT-------TGGCGTGCGCGCGTGGCAGGTGTCG
GCGCTGGAGACGATCGTTAGCAAGGGCGGCAAGGTGGTGGAGGCCGATCTGGTCACGCTCACCGAGGCGCTCATGAGCGA
GCTGCTCAAGCTGGACGCCATCGTCGCCGAGGGCGACGTCAAGGACCAGCGCCGGATCCAGGAGAAGCGGGTGCAGAAGA
ACGTGGAGACGCTGGACGCCATCCGCGCCAAGATGACCAAGAAAAACAGTACACCTGCTGCAACGGCCAATAAGGCCCGG
GCGCCGCACCTGCCCCCTCGTCCGCCGCCGGCGCAGCAGCACCAGCAGCGCCGGCAGTTCCAGCCCGCTGCGCCCACCAC
GGCGACCGCCCCCGCGCCGCAGACCGCGACGGCGAGCTGGGATACGTTCGACCTGCTGTCCTCCACGCCCTCTTCTTCCT
CACCGGCGCCGGTGTCCACCATGGCGCTGGTGACCACCACCTCGCCGTCCCCGAGGTTCGAGTGGGAGCTCTTCTAGAGG
TTGGGACAGGCCCGCCCACCAGCCACATGCGTGTACACGTTC-------------AT---------CAGCCTCATCTCGG
TCATGGCGCGCATCAACTGTCACATTGTTCCCTTCTTCTCTCTCTCTCTCTCTCCATTCTTTCCTTCCATCTTTGTTTTT
T-CTCTTTCGAGTGTATATTGATCTCCTCA-AAAAAGGCAACAGCTCCAGTGATATGATTGTGCCCAGCGACTCCCAAAT
CCACACGAAGATACACACACACACCCATGATCTCTAGGCATGCATGCATCGGGTGTGCTGTGCTGCAAATAAGTGGTGGC
CTTATGTTGATGAA-----GGAATTTCCACGGCAAATTTGTGTATAGTATTGTACAGTGTACTACATCAAATCATCAATT
-ACCATTATATGTGCCTGTCTTATACGTGAGGGATGTACTTGTACTATGATCCATCGATCCAACATTGTACAAACAAATG
CTAG---CTGGTGTATTGATTCAAGAGGGAAAATGATGATGG----------GGATTGATTAATTGCAGGTGCAAATGCA
GCACTGATTGACCAATCGGGTTGCAATTATTTAGGCATCTGCCAGGGCAGGGTAGTTAGCTTTGTCTCTTCAAAAGGTTC
CATTCACTACTA-------CACTAGTGGTGGCTTTGTTTGTCCATCCCTTAATGTAGGATAGTACCTTTTCTTCACCTCT
GGCTTCCTCCCCCTTTCTTCCATGCGGATGCGGTGTCCTCTAGTATATGCTGAATTTGTCGTGTCGGCATGACAGGCATC
ATTAGCTGTTGGGAACTCAGGGCTGAGGAG--------ATATACATATATTTGCGTGCTTGGTA-TA--AGCTTGAAGCT
TCCATGCATGCTTTCCATGCATGTGGTTGCTAGGTCAGTGCGTGTTAGCTGTGATTGAATGGTACGGCAAAAACAACAAT
ACTCATAGTATTACTACTATTATTACAGGCTGATTCCTTACAATGATCTTCTGGTATTAATGACCTGATCATTACATACC
TTCATTCTGTTCCATGC
>SNPs
-----S----SS-------S-----------------------------------S------------------------
------------------------------------------SSSS-------------------S--------------
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--------------------------SSSSS----------------------------------------SSS------
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-----S----------------------------SSS-------------------------------------------
---S----------------------------------------------------------------S-----------
S----------SS----------S---------------------------------------S----------------
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---------------------------------------------------------------------S----------
----------------------------------------------------------------S---S-----------
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------------S-------------------------------------------------------------------
-----------------------------------S------S-----SS---S--------------------------
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-SS-S--S--------S---------------------------------------------------------------
-S------------------S-------------SSS-SSS-SSSSSSSSSSSSS------------------S------
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--S--------------------------------------------------------S--------------------
---------------S-----------------S---------------------S------------------------
S-------------------------------------------------------------------------------
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----------------------S---------------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------------S------S---------------------------------------
-------------S------------S-----SSSSSS---------S----------------S---------------
----------------------------------------------S---------------------------------
-------SS-----------------------------------------------------------------------
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>forward_641
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-------------------------------------------------------------TTACAGCCAGATCAGGTGC
G-------------------------------------------------------------------------------
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>reverse_1894
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-----------------------------------------------------TCTGCTGCAACGGCCAATAA-------
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>forward_929
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------------------------------TGCACAGCTGCTAGCACAT-------------------------------
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>reverse_2197
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------------------------------------CCACACGTTCATTGGCTCGA------------------------
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