>input_sequence_61111
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----------------------------------------------------------------------ATGGAGCAGT
TTGGCTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCGTGGACGGCGCAGGAAGACAAGCTGCTGCTCGGCTATGTT
CGGCAGCAGGGAGAAGGGAGGTGGAATTCTGTCGCCAAGCTCACAGGTGC-----GCAATGATCATGATCATTCGTGTTC
TTTAATTT-GGACTGCATGCGTATACGTACGTGCGCATGCAAGTTCGTCAATGCCCAATAGTGCTGCTTCGTCTACTGGG
GCTCTAGCTGGGAGCTAGCTAAGCTAATCTCGTTTTGCTGCAGGTTTGAAGAGAAGCGGGAAGAGCTGCAGGCTCCGGTG
GGTGAATTACCTGCGGCCTGACCTCAAGAGAGGCAAGATTACGCCACAGGAGGAGAGTGTCATACTCGAGCTCCATGCCT
TGTGGGGAAACAGGTACCACCTACAGAAATCATTTTCTTTGGTCTGCGGATGCGCATGCACGCCATGA--------TCGA
TGGGATCGAGCTGAT-AAACACATGCACTTAATTTGTGATGATCGATCT---GCCAGATGGTCGACGATTGCGCGTAGCC
TCCCCGGCCGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGGAAGCCGTCGTCCAAGAACATC
GAGCGCGCCAGGGCGCGCTTCCTCAAGCAGCGCCGCGAGATCATGCAAGGTCATCACGAGCACCAGCGCGACGTACAGGA
CGACGACGGCACTGCTAGCGCGGACAACACCGGCGGCGGCGCGGCGATCCAGCACGCAGATGAAGCGACGACACGGCCAA
CGCCGCCGCCGGCGCAGGACG---ACGACCTAGCGATGATGCGAGACATGGCGGACACGGACGATTTCCTGCAGTACGAC
CACCACCCCATGTCGATGTCGGCCTACTTCCTCCTCGACGGCGGCGACGGCGCCACCAGCGACGCGGGGTCCAGCGGGGA
GATCACCTCCTGCGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGACGTCGACGTTGTAGATGACGTCGATGGTGGCG
GCGCGTGCGGCTGGGGCAGCTTCGCTTTGCTCCAAGATCACGGACTCGCTTTCTACTAG---------------------
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>chr6B_1_TraesCS6B01G254200
TACTTCTGTTTATATTTTGAAATCTCTGTACTTCAGTTTATAAATACGTAACATGAATGTAGGGACTTTGTAAAAGGAAA
AGGCTAACGTGGATATGTTGCCACGATCCACAACCCCCGTACACGACAGCACTACACGTCCTCTTGTATGGCCACACGTA
GAGCAATGCACATAAAACGTACGAAACACACCCTAGCTCTTTCTAGAACGAATCTTCGAACCCACGTTCAATGATGCACT
GGTGCTAATCTTTTAGCTAGGAAAAGAAAAGAAGATGCACTAGCACTATTGTTAACAGCACCAAATCTATGCCAGCATCA
TGTTGTTCGTCGACTAGATCTAGATGCGCCACACGAGACAAGGTAACTAAAAATGAGATAGTACCCAAAAATTATTAAGC
CCAAACTT------CATGCGATATTATTGCTGATCAATC-ATCTCCATCGCACGAAGGATAGGAGGGCTAGCAAAAACTG
TTGCAAGAGTCAGTAGTACGATCGATCTGCCGCACCAGGAGCAGGAGGCTGGAACGATGGCCGGCTAGCTACAAGCTAGG
AAACATCCACGGTTTGTCCCTGTCGTGGCTACACAAAGCAACACCCAAACAAAAAACGCAGCTAAGCTAGGCGCTGAGGC
CGCGCTTTCGGCAGGAAACCTACGGTAAGTCGGTAATCCATCATCATGCCTGTCTAGAAAAAGAGGAGCAAAAGGTGGAT
CAGAATTAGCCGCGACACCGATCGCCGGCCGTCGGGGCATTTCCGGCAGACGATTCCCTTGCCACCTCGTCGATCAGGGG
GTAGTGACAGTGGAGTGTCCCTGACAGTGACCTGACCTGCGGTGACCGGTGACCCGGCGCCCCTACGCA----GCGCGCT
AGTATATATGCAGCTATAGCACGCTTGGTTTGTTGCACACCACCTCGC---------CTCACTAG----------CTCTC
TCCTCCTCCCTGGGGGAGTCTAAGTCTACAGCTCGATTACGAGTAGTAATTGTTGCAAGTGATTGTTGGAATGGAGCAGT
TTGGCTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCGTGGACGGCGCAGGAAGACAAGCTGCTGCTCGGCTATGTT
CGGCAGCAGGGAGAAGGGAGGTGGAATTCTGTCGCCAAGCTCACAGGTGC-----GCAATGATCATGATCATTCGTGTTC
TTTAATTT-GGACTGCATGCGTATACGTACGTGCGCATGCAAGTTCGTCAATGCCCAATAGTGCTGCTTCGTCTACTGGG
GCTCTAGCTGGGAGCTAGCTAAGCTAATCTCGTTTTGCTGCAGGTTTGAAGAGAAGCGGGAAGAGCTGCAGGCTCCGGTG
GGTGAATTACCTGCGGCCTGACCTCAAGAGAGGCAAGATTACGCCACAGGAGGAGAGTGTCATACTCGAGCTCCATGCCT
TGTGGGGAAACAGGTACCACCTACAGAAATCATTTTCTTTGGTCTGCGGATGCGCATGCACGCCATGA--------TCGA
TGGGATCGAGCTGAT-AAACACATGCACTTAATTTGTGATGATCGATCT---GCCAGATGGTCGACGATTGCGCGTAGCC
TCCCCGGCCGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGGAAGCCGTCGTCCAAGAACATC
GAGCGCGCCAGGGCGCGCTTCCTCAAGCAGCGCCGCGAGATCATGCAAGGTCATCACGAGCACCAGCGCGACGTACAGGA
CGACGACGGCACTGCTAGCGCGGACAACACCGGCGGCGGCGCGGCGATCCAGCACGCAGATGAAGCGACGACACGGCCAA
CGCCGCCGCCGGCGCAGGACG---ACGACCTAGCGATGATGCGAGACATGGCGGACACGGACGATTTCCTGCAGTACGAC
CACCACCCCATGTCGATGTCGGCCTACTTCCTCCTCGACGGCGGCGACGGCGCCACCAGCGACGCGGGGTCCAGCGGGGA
GATCACCTCCTGCGGCGCCACCTGGGGCAGCCTGTGGAACCTCGACGACGTCGACGTTGTAGATGACGTCGATGGTGGCG
GCGCGTGCGGCTGGGGCAGCTTCGCTTTGCTCCAAGATCACGGACTCGCTTTCTACTAGCCTAGCATA-TACAATGGCAA
TTAGCCTATGCTGTGGAGGGTACACGTAGCGGCTATGTACGTGTGGTGTTGGTGGATAAGGAGGCAAAAATGATAAATCT
GACCTCAGGACGAAACTAATTCACAAACTGAACTACTATTGAAAAAAATTCACTCAGCTGACCCTTTTGTGTAGCGCCCG
ACATCTTGACATCACACTACACTGTGCCACGCCTGACTCACAGGCGCTACATGCCTGACCATCGTCGCATCCAGGACTGA
CTGAAAAATGCTAAGTCAGTGTGCAATGCCTAAGAGCTAGGCGCTGCACTATACAGTGTAGCGCCTAGCGTATAGGCGTT
GCACTGGTGGCCAACACGCGGTACACTTCCACGGCCATTGTTGTGTCCTCTGCGCCTCTGTAGGCTGGCTGTAGCAACGA
ATCCTACCAGTAGGTGACGTGATGATGGATAGCTGCTGCTTCCCCATCG-ATCCGATCCCTATTCGCGTAGTAGTCGCTT
TGGGTTTTTCATTTTTACGAGAAAAGAAAACCTTGTTCGCATA-TCCTGGAGTTCGTACGCGCCCCAAAACTGAGCAGGT
CAGAGGCCCATTAATTGGACGTGTCAACCCACTATGCATGCACATACACACACAGCTACAGCTAGCTGCTGCTGGCCAGC
TAGACACTGTGCGG-TTTTTTTTTAAACAAAGACATTGTGCAGTGGATCGGCGCGTCATACGCATGCATAGGGGAGCGGT
ATAGGCCCAAGCCACCGCTCGCCCAGCCCGAGAACCGTATATATATGTACCGGTGCGGGTCGCGTCGGCATGGGGGTCGC
TAAACATCATAATCATTGCGGCTTTGCTGGTTCGCCCAGGTACAGTTAGCGGCGAGGCCAGACCCATGCATGCAGCATGC
ATGCATGCACGATGCACAAGCTAGCCAGTTCCGCGTGTGTTGGCCACTCATGCAGCGCCAAGAGCTCAGGCGTTGCACGA
CATAGTATAGCGCCTACCCTCAG
>chr6A_31
------------------------------CTTCAGTTTATAATACGTACCAATGAATGTAGGGACTTTGTAAAAGGAAA
AGGCTAACGTGGATATGCTGCCACGAGCCACAACCCCCGTACACGACAGTACTACACGTCCTCTTGTGTGGCCACACGTG
GAGCAATGCACATAAAACGTACGAAACACGCCCCAGCCCTTTCTAGAACGAATCTTTGAACCCACGTTCAATGATGCATT
GGTGGTAATCCTTTAGCTAGGAAAAGAAAAGAAGATGCACTAGCACTATTGTTAACAGCACCAAATCTATGCCAGCATCA
TGTTGTTCGTCGACTAGATCTAGATGCACCACACGAGACAAGGTAACTAAAAATGAGACAGTGCCCAAAAATTATTAAGC
CCAAACTTCCCTTACATGCGATATTATTGCTGATCCATCGATCTCCATCGCACGAAGGGTATGAGGGCTAGCAAAAACTG
TTGCAAGAGTCGGTAGTACGATCGATGTGCCGCACCAGGAGCAGGAGGCTGGATCGATGGCCGGCTAGCTACAAGCTAGG
AAACATCCACGGTTTGTCCCTGTCGTGGCTACACAAAGCAACACCCAAAG---AAACGCAGCTAAGCTAGGCGCGGAGGC
CGCGCTTTCGGCAGAAAACCTACGGTGAGTCGGTAATCCATCATCATGCCTGTCGAGAAAAGGAGGAGCAAAAGGTTGAT
TAGATTTAAGAATCGAG-CGATCGCCGGCCGTCGGGGCATTTCCGGCAGACGATTCCCTTGCCACCTCGTCGATCAGGGG
GTAGTGACAGTGGAGTGTCCCTGACAGCGACCTGACCTGCGGTGACCGGTGACCCGGCGCCCCTACGCA----GCGCGCC
AGTATATATGCAGCGATAGCACGCCTCGTTTGTTGCACACCACCACCTCACCTCACTCTCGCTCG----------CTCTC
TCTCCCTGACGGGG--------AGTCTACAGCTCGATTACGAGT-------------AGTTATTGTTGGAATGGAGCAGT
ATGGCTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCGTGGACGGCGCAGGAAGACAAGCTGCTGCTCGGCTATGTT
CGGCAGCAGGGGGATGGGAGGTGGAATTCTGTCGCCAAGCTCACAGGTGC-----GCAAT---------CATTCGTGTTC
GTTAAATTTGGGCTGCATGCGTACGGGTACGTGCGCATGCAAATTCGTCGAGCTTGCATGTC------------------
----------------------GCTAAGCTCGTTTTGCTGCAGGTCTGAAGAGAAGCGGGAAGAGCTGCAGGCTTCGGTG
GGTGAATTACCTGCGACCTGACCTCAAGAGAGGCAAGATCACGCCGCAGGAGGAGACCGTCATACTCGAGCTCCATGCCT
TGTGGGGAAACAGGTA----------AAAAA----TCTTTAGTTTGCGGATGTGCATGCATGCCATGAGCCCATGATCGA
TGGGATCGAGCTCACAAAACACACGCACTTAATTTGTGATGATCGATCTTCTGCCAGATGGTCGACGATTGCGCGTAGCC
TCCCCGGCCGGACGGACAACGAGATCAAGAACTACTGGCGGACGCACTTCAAGAAGGGCAAGCCGTCGTCCAAGAACATC
GAGCGCGCCAGGGCGCGCTTCCTCAAGCAGCGCCGCGAGATCATGCAAGGTCACCACGAGCACCAGCGCGACGTCCAGGA
CGACGACGGCGCTGCTAGCGCGGACAACAACGGCGACGGCGCGGCTAGCCATCACGCAGATGAAGCAACAACATGGCCAG
CACCGCCGCCGGCGCAGGACGACGACGACCTGGCGATGATGCGGGATATGGCGGACATGGACGACTTCCTGCAGTACCAT
GAT---CCAATGTCGACGTCGGCCTACTTCCTCCTCAACGGCGGCGATGGCGCCGCCAGCGACGCGGGTTCCAGCGGGGA
GATCGACGCCTGCGGCGCCACGTGGGGCAGCTTGTGGAACCTCGACGACCTCGACGTTGTAGATGACGTCGGTGGTGGCG
GCGCGTGCGGCTGGGGCAGCTTCGCTTTGCTCCAAGATCACGGACTCGCTTTCTACTAGCCTAGCATA-TACAATGGCAA
--AGCCTATGCTGTGGAGGGTACACGTAGCGGCTATGTACGTGTGGTGTTGGTGGATAAGGA------------------
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>chr6D_72
-----------------------------------------------------------------------AAAAGGAAA
AGGCTAACGTGGATATGCTGCCACGAGCCACAACCCCCGTACACGACAGTACTACACGTCCTCTTGTATGGCCACACGTG
GAGCAATGCACATAAAACGTACGCAACACGCCCCAGCCCTTTCTAGAACGAATCTTTGAACCCACGTTCAATGATGCACT
GGTGCTAATCTTTTAGCTAAGAAAAGAAAAGAAGATGCACTAGCACTATTGTTAACAGCACAAAATATATGCTAGCATCA
TGCTGTTCGTCTA------CTAGATGCGCCACACGAGACAAGGTAACTAAAAATGAGACAGTGCGCAAAAGTTATTAAGC
CCAAACTTCCCTTACATGCGATATTATTGCTGATCGATCGATCTCCATCGCAGGAAGGATAGGAGGGCTAGCAAAACCTG
TTGCAAGAGTCAGTAGTACGATCGATGTGCCGCACCAGGAGCAGGAGGCTGG----ATGGCCGGCTAGCTACAAGCTAGG
AAACATCCACGGTTTGTCCCTGTCGTGGCTACACAAAGCAACACCCAAAG---AAACGCAGCTAAGCTAGGCGCGGAGGC
CGCGCTTTCGGCAGGAAACCTACGGTGAGTCGGTAATCCATCATCATGCCTGTCGAGAAAAAGAGGAGCAAAAGGTCGAT
GGGAATTAGCCGCGACACCGATCTCCGGCCGTCGGGGCATTTCCGGCAGACGATTCCCTTGCCACCTCGTCGATCAGGGG
GTAGTGACAGTGGAGTGTCCCTGACAGCGACCTGACCTGCGGTGACCGGTGACCCGGCGCCCCTACGCTACGCGCGCGCT
AGTATATATGCAGCGATAGCACGCTTGGTTTGTTGCACACCACCTCGC---------CTCACTCGCTCACTAGCTCTCTC
TCTCCCTG--GGGG--------AGTCTACAGCTCGATTACGAGTGGTAATTTTTGCAAGTGATTGTTGGAATGGAGCAGT
TTGGCTGGGGAAGGGAGGAGGGAGGGTGGAGGAAAGGGCCGTGGACGGCGCAGGAAGACAAGCTGCTGCTCGGCTATGTT
CGGCAGCAGGGAGATGGGAGGTGGAATTCTGTCGCCAAGCTCACAGGTGCCCAACGCAATGATCATGATCATTCGTGTTC
ATTAATTT-GGGCTGCATGCGTACGAGTACGTGCGCATGCAAGTTCGTCGACCTGTAAACCCAAGCTCACGCGTACGAGC
ACATACGAGTACTAT------AGCTAAGCTCGTTTTGCTGCAGGTCTGAAGAGAAGCGGGAAGAGCTGCAGGCTTCGGTG
GGTGAATTACCTGCGGCCTGACCTCAAGAGAGGCAAGATCACGCCACAGGAGGAGAGCGTCATACTCGAGCTCCATGCCT
TGTGGGGAAACAGGTACGTACTGGAAAAAAA----TCTTTAGTTTGCGGATGTGCATGCATGCCATGA--------TCAA
TGGGATCGAGCTCACAAAACACATGCACTTAATTTGTGGTGTTCGA---TCTGCCAGATGGTCGACGATTGCGCGTAGCC
TCCCCGGCCGGACGGACAACGAGATCAAGAACTACTGGAGGACGCACTTCAAGAAGGGCAAGCCGTCGTCCAAGAACATC
GAGCGCGCCAGGGCGCGCTTCCTCAAGCAGCGCCGCGAGATCATGCAAGGCCACCACGAGCACCAGCGCGACGTCCAAGA
CGACGACGGTGCTGCCACCGCGGACAACACCGGCGGCGGCGCGGCTAGCCATCACGCAGACGAAGCGACGACACGGCCAG
CGCCGCCGCCGGCGCAGGACGACGACGACCTGGCGATGATGCGGGACATGGCGGACATGGACGAGTTCCTGCAGTACGAC
CACCACCCCATGTCGATGTCGGCCTACTTCCTCCTCGACGGCGGCGATGGCGCCGCCAGCGACGCGGGGTCCAGCGGGGA
GATTACCACCTGCGGCGCCACGTGGGGCAGCCTGTGGAACCTCGACGACGTCGACGTTGTAGATGACGTCGGTGGTGGCG
GCGCGTGCGGCTGGGGCAGCTTCGCTTTGCTCCAAGATCACGGACTCGCTTTCTACTAGCCTAGCCTAGTACAATGGCAA
--AGCCTATGCTGTGGAGGGTACACGTAGCGGCCATGTACGTGTGGTGTTGGTGGATAAGGATGC---------------
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>chr6B_2171
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--------------------------------------------------------------GGCAAAAATGACAAATCT
GACCTTAGAACGAAACTAATTCACAAATTGAACTGCTATTGAAAAAAAT-CACTCAACTGGCCCTTTTGTATAGCGCCTG
ACATCTAGGCGTCACACTACACTGTGCCGCGTCTGACTCACAGGCGCTACACGCCTGGTCATCGTCGCGTTTAAGACTGA
CTGAAAAATACTAAGTCAGTGTGCAACGCCTAAGAGCTAGGTGCTGCACTATACAGTGTAGCGCCTAGCGTATAGGCGTT
GCACTGGTGGCCAACACGCGGTACACTTCCACAGCCATTGCTGTGTCCTCTGCGCCTCTGTAGGCTGGCTGTAGCAACGA
ATCCTACCAGTAGGTGACGTGATGATGGATAGCTCCTGCTTCCCCATCGCATCCGATCCCTATTCGCGTAGTAGTAGCTT
TGGGTTTTTCCTTTTTACGAGAAAAGAAAACCTTGTTCGCATACTCCTGGAGTTCGTACGCGCCCCAAAACTGAGCAGGT
CAG--GCCCATTAATTGGACGTGTCAACCCACTATGCATGCACATACACACACAGCTACAGCTAGCTGCTGCTGGCCAGC
TAGACACGGTGCGGTTTTTTCTTTAGACAAAGACACTGTGCGGTGGATCGGCGCGTCATACGCATGCATAGGGGAGCGGC
ATAGGCCTAAGCCACCGCTCGCCCGGCCCGAGAACCGTATAC----GTACCGGTGCGGGTCGCGTCGGCATGGGA-TCGC
TAAACATGATAATCATTGCGGCTTTGCTGGTTCGCCGAGGTACGGTTAGCGGCGAGGCCAGACCCATGCATGCAGCATGC
ATGCATGCACGATGCACAAGCTAGCCAGTTCCTCGTGTGTTGGCCACTGATGCAGCGCCGAGAGCTCAGGCGTTGCACGA
CATAGTATAGCGCCTA-------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SSSSSSSSS----------------------------
-----------------S--------S----------------------S-----------------------------S
-----------------------------S---S---S------------------S-----------------------
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----------------------------------------------------------S---S-----------------
-----------------------------------S--------------------------------------------
--------------------------S--------------------------S--------------------------
-------------------------------------------------SSSS---------------------S-----
--------------------------S---------------------------S---------------------S---
S-------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------S------------------------------------------------S----------------
--SS---SS-S---SSSSSSSS----------------------S------S----------------------------
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--------------S-----------------------------------------------------------------
S----------S-----------SSS-----------------------S-SSSSS---SSSSSSSSSS--SS---SS-S
S-SSSS-SSSSSSSSSSSSSS------S-----------------S----------------------------S-----
---------------------------------------S-----------------S----------------------
-----------------SSS--SS-S---SSSSSS-----S--S--------S-------S-------------------
------------S-S-----------------------------------------------------------------
----------------------------------------------------------S---------------------
-----------------------------------------------------S--------------------S-----
----------S----------------------------------S-S---S---------------------------S
-------------------------------S-----------S-------------S------S---------------
-----------------------------------------------S------S-------------------------
-------S-------------S-------------------------------------------------S--------
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SS-----------------------------------------------------------------------S------
-----S--S------------------S------S--------------S------S---S---------S-------S-
------S-S-S-----------------S--S-------------------S-----SS---------S-SS-S------
---------S----------------S--------------S--------------------------------------
--------------------------------S-------S---------------------------------------
----------------------------------S----------------------------------------S----
----------S---------------------------------------------------------------------
---SS---------------------------------------------------------------------------
-------S------------S----S---------S-----S-------------------------------------S
-------S----------------S----------------SSSSS----------------------------SS----
-------S----------------------------S------S------------------------------------
--------------------------------S---------------S----------S--------------------
----------------SSSSSSS
>forward_963
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---------------------------------------------------------------TCGCCTCACTAGCTCTC
TCC-----------------------------------------------------------------------------
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>reverse_1905
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----------------------------------------------------------------TTTCCTGCAGTACGAC
CACC----------------------------------------------------------------------------
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>forward_1291
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-----------------------------------------------------------------------TCTACTGGG
GCTCTAGCTGG---------------------------------------------------------------------
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>reverse_2297
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--------------------------------------------------------GCTGACCCTTTTGTGTAGCG----
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