>input_sequence_61095
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------------------------------------------------GGATAAATACCCTGCTCACGCCTCTCGTCTGA
TAATAGTAACAACATTTTCCATACCTACGCGCCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCGCCTTGTGCCTTG
TGGCCGCTTCCGCCGTCGCCGTGCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCCGGCGAGCAGGAGGCGCTGTGC
GTGCAGCTGCTGTCGTCGAGCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGGCCGTGATGGC
GGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGACTCCGAAGACCTCAAGAACATGAGCCCGG
AGCTCCAGCGCTGCGTCGAGGACTGCGCCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTACTAATCCAAG
GTAGTAATCTCTGCATGCGACGTGTTTGCTCTGGCCGTTGGCAGGTACCAGTCGGCCGCGAAGTTCCTGGGCCAAGCATC
GGAGAAGATGACCGCGGGCTCCTTCGACGAGGCGAGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGACGCTGTGCCAGC
GGTCGTGCGAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTCGTCGACCAACTCTGCACCAATGCCGCA
TCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACATCTGGGTTCTGCGATGTA--------TACCCACCGACATCGT
TCAGCTGGTCAGTTATTTGATACTGACGGCCAGCGGCGGAGGTCCCCGTGGGCCAACAGGGATCGGTGACCACACCTTTG
TTTGCGATCCTTTCATGTATATATATAGCAGAGAAAT---TAGTACGTGCTAGCTTTTGTGGAAACTCGAGGTCTGCCTG
GCCACACATGAGCCGGGCTAAGACGACGGTTTTTGTATTTTATTTAGGGAAATACACACTTAAATGGTGGAATACTATGT
GTACATGAGATTTCTGGTAC-AAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATTTGGTGAAT
AGAAGACG-------------GCACGATGGAGAAGTGAGGA---------------------------------------
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>chr1A_1_TraesCS1A01G231600
ATATTCAGTCCATTTTCCTTATTTTCTCTGTTCTTTTGCTGTGACCCATCCACCGTTTTGGGGCAGACAGTTATGGTACT
CAATCTATTCTATTCTTTCACCCTGGATCTATTGACACATGCCTTTAGGTTGATTCTAAACTGTGTAACACTATCTTTTA
CACAACGATACAATTTACAACCCGTTTACTTATTAGTGTTCATGACATTTAAACACGTTTTGAAAAGTTCAAATTCAAGT
TGGAAAACAACATTAGAAATTATATGAAATCTGAAATGAAGCAGTAATGAAACCTAGAATAAATTATTATGGAAAC-ACG
TAGAAGTGTG-----TAAACATTTTTTTAATACGGTACTATCAAAAATGCTCACATACACGCACAAAACAACATTGAAAA
CATGTAAAATTAGGATGACATATACATATAAAACTACAACAGAAATGTTTTAAAAGAATGCATTTTTGGAACCGAGGCGA
AACCCTGAGAAAAATTAAACCAAATAATATGAAAACTTATTTCGAAGAAATATATAATAGAAATGAACTTGTAAGAAACA
AGGAAAACATGATAAATTAGTAGAACATAAAAATTCGAATGAAATGAGTCAAAATGATAATTTAGTTTCATTATAGTTTC
ACAATTTGGATTTTTTTT-AAATGTGTCTAAGATTGATTTTTGAACATCACAATCCAAATGGGACATAAATCAAGCATTT
GGTTCAAAAGATAAAAATGGTATAAACTTTAAAATCAAATAAAAGGCGTGGGTGGGCGTGAGCTAAATTTCCTTTTGGCT
CAAAACATACTCACTGCCTACTTACCATGGGACCCCCAAGCTAGCTGGCCCACACGTCATTCTTTATA-TTTTAAGAAGA
ACGTGATTCAATCCATTTCTTCTTCACCTTAAAACAAGCACAGCCATCGAAAGCGAGCACATTTACACCCTGTAATTGCC
GTTGCTGAACGACAAGCAACCATTCTAAAATTAGCAAAAACCTCGCAAGGATAAATACCCTGCTCACGCCTCTCGTCTGA
TAATAGTAACAACATTTTCCATACCTACGCGCCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCGCCTTGTGCCTTG
TGGCCGCTTCCGCCGTCGCCGTGCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCCGGCGAGCAGGAGGCGCTGTGC
GTGCAGCTGCTGTCGTCGAGCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGGCCGTGATGGC
GGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGACTCCGAAGACCTCAAGAACATGAGCCCGG
AGCTCCAGCGCTGCGTCGAGGACTGCGCCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTACTAATCCAAG
GTAGTAATCTCTGCATGCGACGTGTTTGCTCTGGCCGTTGGCAGGTACCAGTCGGCCGCGAAGTTCCTGGGCCAAGCATC
GGAGAAGATGACCGCGGGCTCCTTCGACGAGGCGAGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGACGCTGTGCCAGC
GGTCGTGCGAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTCGTCGACCAACTCTGCACCAATGCCGCA
TCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACATCTGGGTTCTGCGATGTA--------TACCCACCGACATCGT
TCAGCTGGTCAGTTATTTGATACTGACGGCCAGCGGCGGAGGTCCCCGTGGGCCAACAGGGATCGGTGACCACACCTTTG
TTTGCGATCCTTTCATGTATATATATAGCAGAGAAAT---TAGTACGTGCTAGCTTTTGTGGAAACTCGAGGTCTGCCTG
GCCACACATGAGCCGGGCTAAGACGACGGTTTTTGTATTTTATTTAGGGAAATACACACTTAAATGGTGGAATACTATGT
GTACATGAGATTTCTGGTAC-AAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATTTGGTGAAT
AGAAGACG-------------GCACGATGGAGAAGTGAGGAATAAATAGCAAAAAACTACCACATTAAAGGTTAAGATTA
TGAAAAACTATCATTTTTCTTAATTTCACAAAATGCTACCACAAATTTGATTGGTTATTCCAAAAAACCT------AAGT
GACCGAA-TGGTTAAAATTTAAGTGCGGTTATGACATCTCTAGCCCACCCGTCGGGTCCACGTGGGTTCTAGCAGACGGC
GCGTGTGCTAACGGCCATCAGGGCGCAACCGTTCCGACTGGGTCAAGACGACCCGAGCCGGTTCACTCCCGCTCACTCTG
TCTCCTCTCTCTCTCCCTCGATCTGGTAGACCTAAGCAATGGCGGCGACGACGAAAGCACTCGACGACGGCGACCCTATG
GGGGGAGGCGGCAC------GGGGGGATGGGGCGGAGATTATTCGGAAGTGGATAACTGGCCGGGCGGCGGTAGCTTCGC
AACGTAGCCGCCGCCACAGCCTACACTACCGCGGCAGGAGCAGACTAC----------------ACGAGAGGCACAACCT
ACGCCCTCTCCACCGGAGAATCAGGAGCCGTCGCTTGAGTAGAAAGCGATCAGGGCTCTT---------GTTGCCACGGA
TTCGGCGGGCTGCCACCGCTGGGCCTCTAGATTGAAGGCGTTGAGTAAGTTTGTTATATTCATCTACTCCTTGACTTGAA
TTGAAGTAGTTGTGGATGACTGAACTTAGGTTAGTAGTTAATTCTTGAAAATTTCAGTTTACTTTGGATGCAATAGTGAT
TTAGATAAGTACGTAGGATTTTATACTCGGTGTAGGTGGTTTAGATAGGGAATATAGATGCAATTATGCTTGGATTAAGC
AAGCATCAGCACTTCTACTCATTAGCTCTGGAATTTGACTTAGTACTGCTGGTTGACATTACTGAATTTTATAGCAACAC
ATTTATTTAGTTAAGTTTTTATTTGACTACGCGTCAGAAAGATTTGTGAGTTAACAATTTATTTAATACATGCTAGATGA
TGCCATTTGGGAGATAAGACTGCATTTCTAGGGCAAAGA
>chr1B_1
ATATTCAATCCATTTTCCTTATTTTCTCTGTT-TTTTGTTGTGACACATCCACCATTTAGGGGCAAAACGTTATGGTACT
CAATCTATTCTATTCTTTCACCCTGGATCTATTGACACATGCCTTTAGGTTGATTCTAAAATGTGTAACACTATCTTTTA
CACAACGATACAATTTACAAACCGTTTACTTATTAGTGTTCATGACATTTGAACACGTTTTGAAAAGTTCAAATTCAAGT
TGGAAAACAACATTAGAAATTATGTGAAATCTGAAATGATGCAGTAATGAAACCTAGAATAAATTATTATGGAAAC-ACG
TAGAAGTGTGTCTATTAAACATTTTTTTAATATGGTACTATCGAAAATGCTCACATACACGCACAAAACAACATTGAAAA
CATGTAAAATTAGGATGACATATACATATAAAACTACAATAAAAACGTGTTAAAAAAAGGCATTCTTGGAACCGAAGGGA
AACCTTGAAAAAAAGTAAACCAAATAATATGAAAGCTTATTTCGAAGAAATATATAATAGAAATGAACTTGTAAGAAACA
AGGAAAACATGATAAATTTGTAGAACATAAAAATTCAAATGAAACGAGTCAAAATAATAATTTA-TTTCATTATAGTTTC
AGAATTTGGATTTTTTTTTAAATGTGTCTAAGATTGATTTTTGAACATCACAATCCAAACGGGACATAAATCGGGCAT-T
GGTTCAAAGATAAAAAATGGTATAAACTTTAAAATCAAATAAAAGGCGTGGGTGGGTGTGAGCAAAATTTCCTTTTGGCT
CAAAACATACTCACTGCCTACTTACCATGGGACCGACAAGCTAGCTGGCCCACACGTCATTCTTTATA-TTT-AAGAAGA
ACGTGATTCAATCCATTTCTTCTTCACCTTAAAACAAGCACAGCCATCGAAAGCGAGCACACCCACACCCTGTAATTGCC
TTTGCTGAACGACAAACAACCATTCTAAAATTAGCAAAAACCTCGCAAGGATAAATACCCTGCTCACGCCTCTCGTCTGA
TAATAGTAACAACATTTTCCATACCTACGCACCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCGCCTTGTGCCTTG
TGGCCGCTTCCGCCGTCGCCGTTCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCTGGCGAGCAGGAGGCGCTGTGC
GTGCAGCTGCTGTCGTCGACCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGGCCGTGATGGC
GGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGACTCCGAAGACCTCAAGAACATGAGCCCGG
AGCTCCAGCGCTGCGTCGAGGACTGCACCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTACTAATCGAAG
GTAGTAATCTCTGCATGCGATGTGTTTGATCTGGCCGTTGGCAGGTACCAGTCGGCCGCCAAGTTCCTGGGCCAAGCATC
GGAGAAGATGACCGCGGGCTCCTTCGATGAGGCGGGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGAGCCTGTGCCAGC
GGTCGTGCCAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTC---GACCAACTCTGCACCATTGCCGCA
TCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACTTCTGGGTTGTGCGATGTATACCCAATTACCCATCGACATCGT
TCAGCTGGTCAGTTATTTGATACTGACGGCCAGCGGCGGAGCTCCCCTTGGGCCAGCAGGGAACGGTGACCTCACCTTTG
TTTGCGATCCTTTCATGTATATA--TAGCAGAGAAAT---TAGTACGTGTTAGCTTTTGTGGAAACTTGAGGTCTGCCTG
GCCAAACATGAGCCGGGTTAAGACGACAGTTTTTGTATTTTATTTAGGGAAATACACATTTAAATGGTGGAATACTATGT
GTACATGAGATTTCTTGTACAAAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATTTGGTGAAT
AGAAGACGAGAATAGAAGACGGCATGATGGAGAAGTGAGGAATAAATAACAAAAAACTACCACATTACGGGTTAGGGTTA
CGAAAAACTACCACTTTTCTTAATTTTATAAAATGCTACCACAAATTTAGTTGGTTGTTCAAAAAAAAGGAAAACCAAGT
GACCGAAGCGGTTAAAATTTAAGTGTGGTTGTGACATCTCTAGCCCACCCGTCAGGTCCACGTCGGTTCTGGCAGACGGT
GCGTGTGCTGACAGCCGTTAGGGCGTGGCCCTTCCTACTGGGTCAAGACGACCTGAGCCAG-TCACTCCCGCTCACTATG
TCTTCTCTCTCTC--CCTCGATCCGGTAGACATAAGCGATGCTGGCGGCGGCGAAAGCACTCAACGGCGGTGACCCTATG
GGGGGAGGTGGCACGGTCGGGGGGAGATAGGGCGAAGATTATTCGGAAGTGAATAACTGGCCGAGCAGCGGCAGCTTCAC
AATGCATTGGCCGCCACAGCCTACATCACCGAGGCGGAAGCAGCCTAC----------------ACCAGAGGCACACCCT
ACGCCCTCTCCACCGGAGAATCAGGAGCCGTCGCTTGAGTACAAAGCGGCCAGGGCTCTTACTGTCGCCGTCGCCGCGGA
TCCGGCGGGCTCCCACCATTAGGCCTCTGGATTGGAGGCGTTGAGTAAGTTTGTTTTCTTCATCTACTTCTTGACTTGAA
TTGAGGTAGTTGTGGATGACTGAACTTAGCTTAGTAGTTAATTCTTGAAAATTTCAGTTTAGTTTGGATGCAATTGTTAT
TTTGATAAGTAC--------------------------GTTTAGGTAGGGAGTATAGATGCAGTAATGCTTGGATTAAAT
AGGCAGCACCACTTTTACTCATTAGCTCTCGAATTTGATTTA-----GCTGGTTGACATTACTGAATTTTATAGAAACAC
ATTATTCAGTGAAGTTTTTTATTTGACTATGTGTTAGAAAGATTTGTGAG------------------------------
---------------------------------------
>chr1D_154
TCG-----------------------------------------------------------------------------
----------------------------------------------------------------------------TTTA
CACAACGGTACAATTTACAACCCGCTTACTTATTAGTGTTCATGACATTTAAACACGTTTTGAAAAGTTCAAATTCAAGT
TAGTAAACAACATTATAAATTATATGAAATATGAAATGAAGCAGTAATGAAACCTAGAATAAATTATTATGGAAAAAACG
TAGAAGTGTGTCTATTAAACATTTTTTTAATATGGTACTATCAAAAATGCTCACATACACACACAAAACAACATTAAAAA
CATGTAAAATTAGGATGACATATACATATAAAACTACAACAAAAACGTGTTTAAAAAAGGCATTTTTGGAACCGAGGCGA
AACCTTGAAAAAAATTAAACCAAATAATATGAAAACTTATTTTGAAGAAATATATAATAGAAATGAACTTGTAAGAAACA
AGGAAAACATGATAAATCAGTAGAACTTAAAATTTCGAATGAAACGAGTCAAAATGATAATTTAGTTTCAT-ATAGTGTC
ACAATTTGCATTT-TTTT-AAATGTGTCTAAGATTGATTTTTGAACATCACAATCCAAATGGAACATAAATCAGGCATTT
GGTTCAAAAGATAAAAATGGTATAAACTTTAAAATCAAATAAAAGGCGTGGGTGGCTGTGAGCAAAATTTCCTTTTGGCT
CAAAACATACTCACTACCTACTTACCATGGGACCCCCAAGCTAGCTGGCCCACACGTCATTCTTTATGTTTT-AAGAAGA
ACGTGATTCAATCCATTTCTTCTTCACCTTAAAACAAGCACAGCCATCGAAAGCGAGCGCACCCACACCCTGTAATTGCC
GTTGCTGAACGACAAGCAACCATTCTAAAATTAGCAAAAGCCTCGCAAGGATAAATACCCTGCTCACGCCTCTCGTCTGA
TAATAGTAACAACATTTTCCATACCTACGCACCAATGGCGTCCTCGTCCATGATCACCTTCGCAGCCACCTTGTGCCTTG
TGGCCGCTTCCGCCGTCGCCGTTCCGCCGGCCACCCTCCAGGAGACGTGCCAGAGCGCTGGCGAGCAGGAGGCGCTGTGC
GTGCAGCTGCTGTCGTCGAGCCCGGCGGCCCAGAAGACGCCGGTGGACACGCCCGGGCTCGCCCAGGCGGCCGTGATGGC
GGCGGGGTCGAACGCGACGGAGACGGCGGCGCACCTGCAACGGCTCTTCGAATCCGAAGACCTCAAGAAGATGAGCCCGG
AGCTCCAGCGCTGCGTCGAGGACTGCACCGAGAGGTAGTACCCTTACCAAAGATGAAGAGCTAGCCATTACTAATCCAAG
GTAGTAATCTCTGCATGCGATGTGTTTGATCTGGCCGTTGGCAGGTACCAGTCGGCCGCGAAGTTCCTGGGCCAAGCATC
GGAGAAGATGACCGCGGGCTCCTTCGACGAGGCGAGCGTGCTGATCGACGGCGCGCAGTCGGTGGTGACGCTGTGCCAGC
GGTCGTGCGAGGGGGTGCCGCAGGGGGAGCTCACGGCGTGCACCAAAGGCGTC---GACCAACTCTGCACCATTGCCGCA
TCAGTCACTCGGTTGGTCGTTCAGAAGTAATTATAACATCTGGGTTCTGCGATGTA--------TGCCCACCGACATCGT
TCAGCTGGTCAGTTATTTGGTACTGACGGCCAGCGGCGGAGCTCCCCGTGGGCCAACAGGGATCGGTGACCTCACCTTTG
TTTGCGATCCTTTCATGTATATA--TAGAATAGAAATTAGTACTACGTGCTAGCTTTTGTGGAAACTCGAGGTCTGCCTG
GCCACACATGAGCCGGGCTAAGACGACAGTTTTTGTATTTTATTTAGGGAAATACACACTTAAATGGTGGAATACTATGC
GTACATGAGATTTCTTGTAC-AAAAATGTTACATTTGGTTTCTGTGGCTTGTGCAAAAACGCACTGTTAATTTGGTGAAT
AGAAGACG-------------GCACGATGGAGAAGTGAGGAATAAATAGCAAAAAACTACCACATTACG---------TA
TGAAAAACTACCATTTTTCTTAATTTCACAAAATGCTACCACAAATTTGATTGGTTATTCCAAAAAA------ACCAAGT
GACCGAA-CGGTTAAAATTTAAGTGCGGTTATGACATCTCTAGCCCACCCGTGAGGTCCACGTCGGTTCTGGCAGACGA-
GCATGTGCTGACGTCCATTAGGGCGCAACCGTTCCGACCGGGTCAAGACGACCCGAGCCGGTTCACTCCCGCTCACTCTG
TTTCCTCTCTCTC--CCTTGATCTGGTAGACCTAAGCGATGGCGGCGGCGACGACCCTATG------------------G
GGGGGAGGTGGCAC------GTGGGGAGAGGGTGGAGATTATTCGGAAGTGGATAATTGGCCGGGCGGTGGCAGCTTCGC
AACACAGCCGCCGCCACAGCCTACACCGCCGAGGCAGAAGCAGACTACACCAGAGGCAGAACCCACCAGAGGCACAACCT
ACGCCCTCTCCACCGGAGAATCAGGAGCCGTCGCTTGAGTACAAAGCGACCAGGGCTCTTGCTG---------CCACGGA
TCCGGCGGGCTCCCACCGCTGGGCCTCTGGATTTTAGGCGTTGAGTAAGTTTGTTATATTCATCTACTCCTTGACTTGAA
TTGAGGTAGTTGTGGATGACTGAACTTAGGTTAGTAGTTAATTCCTGAAAATTTCAGTTTGCTTTGGATGCAATAGTGAA
TTAGATAAGTACGTAGGATTTTATACTCGGTGTAGGTGGTTTAGATAGGGAATATAGATGCAGTTATGCTTGGATTAAGC
AAGCAGCACCACTTTTACTCATTATCTCTGCAATTTGATTTAGTACTGCTGGTTGACATTACTGAATTTTATAGCAACAC
ATTTATTCAGTTAAGTTTTTATTTGACCATGTGTTAGAAAGATTTGTGAGTTAACAGTTTATTTAATACATGCTAGATGA
TGTCATTTGGGAGATGAGACTGCATTTCCAGGGCAAAGA
>SNPs
-------S------------------------S-----S------S--------S---S------S-SS-----------
------------------------------------------------------------S-------------------
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--------------------------------S-----------------------------------------------
-----------------------------------------S---S--S------S--S---------------------
----S---S-----------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------S------S----------------
------------------------------------------------------------------------S-------
-------------------------------------------------------------SSS----------------
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------------------------------S-------------------------------------------------
----------------------S-----------------------------------S---------------------
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--------------------------S-----------------------------------------------------
--------------------S-------S---------------------------------------------------
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-----------------------------------------------------SSS----------------S-------
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-----------------------------------------S-----------------------------S--------
-----------------------SS-------------------------------------------------------
---------------------------S----------------------------------------------------
---------------S----------------------------------------------------------------
-------------------------------------------------------------------SS-----S-S---
----------S--------------------------------------------------------SSS----------
--------S--------------------------------------------S---------S------S--------S
---------S--------S-------------------------------------------------------------
-------------SS----------------------S---------S--------------S---S---S---------
--------S-------------------S------------------------------------------S--------
----S---------------------S----S-----S----------------------------S-------------
-----------------------------------------S-------S---------------------S--------
-S---------S----------------S-----S---------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-----S--S-----S-----------------------S-----------------------------------------
-------S---------------------S-S--S---------------------S-----------------------
--S------------S------------S----------
>forward_59
---------------------------------------TGTGACCCATCCACCGTTTT---------------------
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>reverse_1655
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------------------------------------------------------TCGACCAACTCTGCACCAAT------
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>forward_777
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-------------------------------------AATAAAAGGCGTGGGTGGGC-----------------------
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>reverse_2598
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-------------------------------------GAGCAGACTACACGAGAGGC-----------------------
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