>input_sequence_61090
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------------------------------------------------ATGTCGTCAACCGCTGCCGGCGGCAAGCCATC
GCGGTCCGCCTCCGCCCTTGCCGCCGACACGGCGACCGGATCCCACCACTTCACGATCGACCTCTACTCGCGCACCAAGG
GCATCCCCACAGGCGAGTCCCTCAAGTCCTGCCCTTTCACCGTGGGAGGCCACCGCTGGCTCGTCCTCTACTACCCCAAT
GGCGACCAGGCGGAGAACGCCGGCTACATATCCCTCCGCCTCATCCTCGCCGAAAATACCTCCAGGACGGTGAGGGCGCA
GCACCAGTTCCGCTTCGCCGGCGAGGCGGAGAATCAGGCGCTGCCGTTGGAGGCGGAGCCGCTGAACAACTTCGCCGGCC
TGGCGAGCTGGGGGAACTCCAAGTTCATCCGAGGGGAGGCCCTGGAGAAATCGAAGCATCTCAGGGGGGACTCCTTCGCC
GTCCGGTGCGACCTCATCGTCGTCAGCGACTTCCGCGCGGTGGAGACGCCTGAGCCTGCCGCTCCGGCATTCGTCACCGT
GCCGCCGTCCGACCTGCACCTGCACCTGGGTAACCTTCTCCTCGCAGAGAAGGGCGCCGATGTGGTGTTCGAGGCCGGAG
GCGAGACCTTCGCCGCGCACCGCTGCCTGATCGCGGCCCGGTCGCCGGTGTTCAGTGCGGAACTCTTTGGCGAGATGAAG
GAGAGCGTCGACACATCGGCTGTCGTCAAAATAGATGACATGGACGCGCAGGTGTTCAAGGCATTGCTCTATTTTGTGTA
CACCGACACCTTGCCGGAGATGAAGAGGGAAGAAGCAGGGGAAGAAGCCATGTCTCAGCATCTGCTCGTCGCAGCCGACA
GGTATAATCTGGACAGGCTAAAGCTGATCTGCGAAGACAAACTTTGCAGGTGCATCCAAGTGAGCACTGTGGCCACAATC
TTGGTGTTGGCTGAGCAACACCACTGCAGTGGACTGAAGAAGGCATGCTTCGATTTTCTCAGCTCTCAGGCGAATCTGAA
GGCGGCCATGGCCAGTGACGGCTTTGAGCATCTGAGCCAAAGCTGCCCTGCTATCATGAAGGAGTTGATCTCTATGCTCA
GCGCCTTGGTTCCGTGA---------------------------------------------------------------
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>chr7B_1_TraesCS7B01G296200
GCTTTAATAATTCTTAAATATTCCATAAAAAATCCTCGGGAAGTTCAGCTCATTTGGAGTTGTGCAGAATAGGTAGCTTG
ACGTAGCTTTTTCAAGTCCAGATTTTCAATTGCCAGAATTCTTCCCTTGGTACATACCTTGCATATTATGAGAGAAAAGA
CATTAGAATTACTCAAAAAGCATTATTATACAATAAAATAACATAAATAACAGTAGAAAAACATAATGTAAAATGGACGT
ATCACACATACATGTCGGGATGTCACATGCACCCCCACGCCCTTCCGTCATGGGGAGGACATCGACAATGACTCCGACAA
TAACGATGACATGGACGGCAACGGAGGTTCCACCGGCCATCCCGACCAGGCATACAAGGTCACCATCCGCTATAAATTAG
TTTAGTCTTTTTAAGTTTAGTCAAATGGACAAAATATCATCCGATTTTATAAATTACATCAAAGTTTATGTCCATTTTAC
ATGAATTCTGCCATGTTTGTATGATATTTGTCCGTCTAGTTTAATTTTGTTTGTATTGTGCACGGAGGTGTTTGAGGCTA
GTGTTGGATGTCCGACTCCATATCATTGTCCGCGCCCGCAGAAATATATTATGTCCGTTTTGGGTGCTTCACGCCTAGAA
ATTTCATAATGTAGACGGCCCGAGTGTGGCTTCTACATCGCTGCATATTCGTGTTCATTTTCCAGTCTCTATGGTTGTTT
AATAAAGTCAATGATTAACTGATTATAAAAGAAAACGTTTGCAAAAATTATTCGTTT--CTGCATTTTCTACCCTTTTTG
CTACCCGGTTAGTCCAACGAACATTTTCCCTACGA---GTATGAATGACGCGGTCAA-GTTGTCAAGTGAACCTTAAAAG
AAAGTTGACAATTGGGCCGACCGAGTAAGCACCTCATACTTCCG-TTCGCACGAGCGATTTATATTTTGCTTCCCTGCCC
TTAACCCTACCGCACCAGAGCGGCAGAACCC-CAATCCCCCACTCGCCATGTCGTCAACCGCTGCCGGCGGCAAGCCATC
GCGGTCCGCCTCCGCCCTTGCCGCCGACACGGCGACCGGATCCCACCACTTCACGATCGACCTCTACTCGCGCACCAAGG
GCATCCCCACAGGCGAGTCCCTCAAGTCCTGCCCTTTCACCGTGGGAGGCCACCGCTGGCTCGTCCTCTACTACCCCAAT
GGCGACCAGGCGGAGAACGCCGGCTACATATCCCTCCGCCTCATCCTCGCCGAAAATACCTCCAGGACGGTGAGGGCGCA
GCACCAGTTCCGCTTCGCCGGCGAGGCGGAGAATCAGGCGCTGCCGTTGGAGGCGGAGCCGCTGAACAACTTCGCCGGCC
TGGCGAGCTGGGGGAACTCCAAGTTCATCCGAGGGGAGGCCCTGGAGAAATCGAAGCATCTCAGGGGGGACTCCTTCGCC
GTCCGGTGCGACCTCATCGTCGTCAGCGACTTCCGCGCGGTGGAGACGCCTGAGCCTGCCGCTCCGGCATTCGTCACCGT
GCCGCCGTCCGACCTGCACCTGCACCTGGGTAACCTTCTCCTCGCAGAGAAGGGCGCCGATGTGGTGTTCGAGGCCGGAG
GCGAGACCTTCGCCGCGCACCGCTGCCTGATCGCGGCCCGGTCGCCGGTGTTCAGTGCGGAACTCTTTGGCGAGATGAAG
GAGAGCGTCGACACATCGGCTGTCGTCAAAATAGATGACATGGACGCGCAGGTGTTCAAGGCATTGCTCTATTTTGTGTA
CACCGACACCTTGCCGGAGATGAAGAGGGAAGAAGCAGGGGAAGAAGCCATGTCTCAGCATCTGCTCGTCGCAGCCGACA
GGTATAATCTGGACAGGCTAAAGCTGATCTGCGAAGACAAACTTTGCAGGTGCATCCAAGTGAGCACTGTGGCCACAATC
TTGGTGTTGGCTGAGCAACACCACTGCAGTGGACTGAAGAAGGCATGCTTCGATTTTCTCAGCTCTCAGGCGAATCTGAA
GGCGGCCATGGCCAGTGACGGCTTTGAGCATCTGAGCCAAAGCTGCCCTGCTATCATGAAGGAGTTGATCTCTATGCTCA
GCGCCTTGGTTCCGTGATGCTTACCTAGTGTTCTACGAATGGTGGTTGGTGTTCCCAGGATTTCTGTCATCAAGTAGTTT
TAGCAATGGCAGTTCTTGTTCTCTAGACTT-AGGCTATTAGGTACTACCTCCGTTTTTATTTACTCCGCATATTAGTTTT
GGTCAAAGTCAAGCTTTACAAACTTTAACAAAGTTTATAAACAAAAATATTAATATATACAATAACAAATCAATACCATT
AAATCCGTTGTTGAATGTACTTCCACATCATATAGATTTGTTATGCTAATTATTTATATTCTTTTTTATAAATTTAGTCA
AACATTACAAAGTTTGACTTCAGTCAACTCTAATATGCGGAGTAAATAAAAACGAAGGGAGTATACTACAGCTATTCTAG
GGGTAATCTGAAGGAGACTCGTTTTATCTGTTCTGTTAGCTGATTTGCATCTCTAAAACTCCCATGATTAGTCGAGAATT
ACTTCACTATCAGCTACTAGTGTCAAAGCGCTCTTATATTATGGGACGGGGTACTACTTAGACACTCCCTCCGAGCCAAA
TTGGATGCAATAAGATGTATATTATGGGACGAGGTTGAATCTCCGGTTAGCCTGCAAATTTGCTAGGGCCATCTCTTTTA
CATACAAGTCATTTTTAGTACCATAATTAATGCTCACTGCTCGGTGCGTCAACAATGCTACTCTCTGTTTTCTGGCTTCG
--TCTATGCTAGGTTGGTGTAAAAGCATGATCAGGGCTTCTCTACAACCTCGCTGGTTAATCTGTAACGACTTCGCATTC
TGATAGATGGTTTATTGCTCTTAACTTCACTGGATCTCCAAGTTATCTCTTCTTTCGCATGGTATGCTTTGGATGAGTAA
TGCAAGATAATTCTTGCTTTATCTGCTTTTCTCTGGTTATAAAGGAGATGAGAAAAGAAAAGTTGGTCTGTGTTTTGACG
TTAGTCTTGCTGACAATTCAAGAGATACTCTATTACTTGATAGTTTGTCATTAATTAATT
>chr7D_757
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------------------------------------GTTTGCAAAAATTACTTTTTTTCCTGCATTTTCTACTCTTTTTG
CTACCCGGTTAGTCCAAGGAACATTTTCCGTACGAGGGGTATGAATGACGCGGTCAAAGTTGTCAAGTGAACCTAAAAA-
AAAGTTGTTACGTGGGCCGACCCAGTAACCGACTTGTACTTGCGTTTCGCACGAGCGATTTATAT--TGCCTCCCTGCCC
TGAACCCTACCGCACCAGAGCGGCGGAACCCCAAATCCCCCACTCGCCATGTCGTCAACCGCTGCCGGCGGCAAGCCATC
GCTGTCCGCCTCCGCCCTTGTCGCCGACACGGCGACCGGATCCCACCACTTCACGATCGACCTCTACTCGCGCACCAAGG
GCATCCCCACAGGCGAGCCCCTCAAGTCCTGCCCTTTCACCGTGGGAGGCCACCGCTGGCTCGTCCTCTACTACCCCAAT
GGCGACCAGGCGGAGAACGCGGGCTACATATCCCTCCGCCTCATCCTCGCCGAAAACACCTCCAGGACGCTGAGGGCGCA
GCACCAGTTCCGCTTCGCCGGCGAGGCGGAGAATCAGGCGCTGCCGCTGGCGGCGGAGCCGCTGAACAACTTCGCCGGCC
TGGCGAGCTGGGGGAACTCCAAGTTCATCCGAGCGGAGGCCCTGGAGAAATCGAAGCATCTCAGGGCGGACTCCTTCGCC
GTCCGGTGCGACCTCATCGTCGTCAGCGACTTCCGCGCCGTCGAGACGCCTGAGCCCGCCCCTCCGGCATTCGTCACCGT
GCCGCCGTCCGACCTTCACCTGCACCTGGGCAACCTTCTTCTCGCAGAGAAGGGGGCCGACGTGGTGTTCGAGGCCGGAG
GCGAGACCTTCGCCGCGCACCGCTGCCTGATCGCGGCCCGGTCGCCGGTGTTCAGTGCGGAGCTCTTTGGCGAGATGAAG
GAGAGCGTCGACACAACGGCTGTCGTCAAAATAGACGACATGGATGCGAAGGTGTTCAAGGCATTGCTCTATTTTGTGTA
CACCGACACCTTGCCGGAGACGAAGAGGGAAGAAGCAGGGGAAGACGCCATGTCTCAACATCTGCTTGTCGCAGCCGACA
AGTATAACCTGGACAGGCTAAAGCTGATCTGCGAAGACAAACTTTGCAGGTGCATCCAAGTGAGCACTGTGGCGACAATC
TTGGTGTTGGCTGAGCAACACCATTGCAGTGGCCTGAAGAAGGCATGCTTTGATTTTCTCAGCTCTCAGGCGAATCTGAA
GGCAGCCATGGCCAGTGACGGCTTTGAGCATCTGAGCCAAAGCTGCCCCGCTATCATGAAGGAGTTGATCTCTATGCTCA
GCGCCTTGGTTCCGTGATGCTTACCTAGTGTTCTACGAATGGTGGTTGGTGTTCCCAGGATTTCTGTCATCACGTAGTTT
TAGCAATGGCAGTTCTTGTTATCTAGACTT-AGGCTATCAGGTAAG----------------------------------
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----------------------------------------------------------------GCTGCATCTATTCTAG
GGATGATCTAAAGTAGTCTCATTTTGTCTGTTCTGTTAGCTGATTGT-ATCTCTAAAACTCTGTCAGTTAGTCATGAATA
TCTTTGCTCTACTCAGCTAGCTTGGTT-----------------------------------------------------
--------------------------------GGTTGAATCTCCGGTTGGCATGCAAATTTGCTA-GGCCATCTTTTTTA
CATACAAGTCATTTTTAGTATTA----TAATGCTCACTGCTCA--GCGTCAACAATGCTACTCTCTGCTTTCTATAGCTG
CATCTATGCTTGGTTCGTGCAAAAGCCTGACCAGTGCTTTTCTATAACCTAGTCCGTTAATTTGGAATGACTTCGCTATC
AGGCAGATAGTTCATTAC---------------------A------------TTTTGCATGGTATGCTTTGGATGAGTAA
TGCAAGATAATTCTTGCTTTATCT--------------------------------------------------------
------------------------------------------------------------
>chr7A_936
TAT-----------------------------------------------------------------------------
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--------------------------------------------------------------TAT--TGCCTCCCTGCCC
TTAACCCTACCACACCAGAGCGGCGGAA-CCCCAATCCCCCACTAGCCATGTCGACAACCGCTGCCGGCGGCAAGCCATC
GCGGTCCGCCTCCGCCCTTGTCGCCGACACGGCGACCGGATCCCACCACTTCACGATCGACCTCTACTCGCGCACCAAGG
GCATCCCCACAGGCGAGTCCCTCAAGTCCTGCCCTTTCACCGTGGGAGGCCACCGCTGGCTCGTCCTCTACTACCCCAAT
GGCGACCAGGCGGAGAACGCGGGCTACATATCCCTCCGCCTCGTCCTCGCGGAAAACACCTCCAGGACGGTGAGGGCGCA
GCACCAGTTCCGCTTCGCCGGCGAGGCGGAGAATCAGGCGCTGCCGTTGGCGGCGGAGCCGCTGAACAACTTCGCCGGCC
TGGCGAGCTGGGGGAACTCCAAGTTCATCCGAGCGGAGGCCCTGGAGAAATCGAAACATCTCAGGGGGGACTCCTTCGCC
GTCCGGTGCGACCTCATCGTCGTCAGCGACCTACGCGCGGTGGAGACGCCTGAGCCCGCCCCTCCGACATTCGTCACCGT
TCCCCCATCCGACCTTCACATGCACCTGGGTAACCTTCTCCTCGCAGAGAAGGGCGCCGACGTGGTGTTCGAGGCCGGAG
GCGAGACTTTCGCGGCGCACCGCTGCCTGATCGCGGCCCGGTCGCCGGTGTTCAGTGCGGAGCTCTTTGGCGAGATGAAG
GAGAGCGTCGACACGACGGCCGTCGTCAAAATAGATGACATGGATGCGCAGGTGTTCAAGGCATTGCTCTATTTTGTGTA
CACCGACACCTTGCCAGAGATGAAGAGGGAGGAAGCAGGGGAAGACGCCATGTCTCAACATCTGCTGGTCGCAGCCGACA
GGTATAACTTGGACAGGCTAAAGCTGATCTGCGAAGACAAACTTTGCAGGTGCATCCAAGTGAGCACTGTGGCCACAATC
TTGGTGTTAGCTGAGCAACACCACTGCGGTGGACTGAAGAAGGCATGCTTCGATTTTCTCAGTTCTCAGGCGAATCTGAA
GGCGGCCATGGCCAGTGACGGCTTTGAGCATCTGAGCCAAAGCTGCCCCGCTATCATGAAGGAGTTGATCTCTATGCTCA
GCGCCTTTGCTCCGTGATGCTTACCTAGTGTTCCACGAATGGTGGTTGGTCTTCCCAGGATTTCTGTCATCAAGTAGTTT
TAGCAATGGCAGTTCTTGTTATCTAGACTTTAGGCTATCAGGTAAG----------------------------------
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----------------------------------------------------------------ACTGCATCTATTCTAG
GGATGATCTAAAGTAGTCTCATTTTGTCTGTTCTGTTAGCTGATG-GCATCTCTAAAACTCTCACAGTTAGTCATGGATA
TCTTTGCTCTACTCAGCTAGCTTGGTT-----------------------------------------------------
--------------------------------GGTAGAATCTCCGGTTGGACTGCAAATTTGCTA-GGCCATC-TTTTTA
CATACAAGTCATTTTTAGTACTG----TAATGCTCACTGCTCA--GCGTCAACAATGCTACTCTCTGCTTTCTATAGCTG
CATCTATGCTTGGTTGGTGCAAAAGCATGACCAGTGCTTTTCTATAACCTAGTCAGTTAATTTGGAATGACTTCGCTATC
AGACAGATAGTTCATTATTACTCTTCGGTGCAAAAGAGTA------------TTTTGCATGGTATGCTTTGGATGAGTAA
TGCAAGATAATTCTTGCTTTATCTGCTTTTATCTCTGGT-----------------------------------------
------------------------------------------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-SS------------------S-------
-----------------S-----------S--------------------------------------------S----S
-------SS-SS----------S-----S-SS--SS-----S-----------------------SS---S---------
------------------------S-------------------------------------------------------
--------------------S-----------------------------------------------------------
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--------------------S-----------------------------------S-----------------------
--------------------------------------------------S-----------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------S---S-------------------
---------------S--------------------------------------------S-------------------
-------------------------------------------------------------S------------------
---------------S----------------------------S-----------------------------------
---------------------------------------------S-----------S--------S-------------
-------S------------------------------------------------------------------------
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------------------------------------------------S-------------------------------
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--------------------S-----------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S---------
--S-S----S---S--S---S----S-------------------S---------------S--SSS------SS----S
S---SS--S-SSS-SS----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----------------S--------S-----
---------------------S-SSSS---------------SSS----------------------S-----SSSSSS-
----------S--------S----------S---S----S----S-----S-SSS------S--S--S--------SS--
S--S----S---S---S--SS-SSSSSSSSSSS-SSSSS-SSSSSSSSSSSS---S------------------------
------------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_632
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----------------------------------------------------GTCCGTTTTGGGTGCTTCAC--------
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>reverse_2623
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--------------------------------------------------------------CACTCCCTCCGAGCCAAA
TT------------------------------------------------------------------------------
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