>input_sequence_61011
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-----------GCATAAAACCCCACACTCGCTCCGCATCTCAGTGATCACTCCCTCCTCCTCCTCTGCC-----------
-------------CGATCCCTCTGTCTCTCCGTACCATAGCAGAGACACTTT----CATCCATCCGTCCATGGCGGCCAC
CGT------CGGCAAGGAGAGGGAGGAGGCGGTGGTCCACCCGAACGCGAGGCAGGGGGGCAAGCTCTTGTCCAGGCTGC
TGACGAGGGACAGCTCGGCCGCCGCGCCGTCCTTCCGGGTCTACTACGGCGTGTCCTCCGCCGGCGCGGTGCCGTTCCTG
TGGGAGTCGCAGCCGGGCACGCCCAAGAACGCCATCTCCGATGCCGCGATGCCGCCGCTCACGCCTCCGCCGTCCTACTA
CGCCGCCGGCGGCACCGCCTCCGCCAAGAATCACGCGGCGCGCAAGGGCAAGGTCGCCGGGGGCTACAAGTTCCGGCCGT
CAGGCATCCTGGGCTCCATCCTCATGGCGACGCGTAGGCGGGGCCGGACGACACCGTCGGGC---TCGCCCACCTCGTCC
TTCTCCTCCGCGTCCACCTCCTCCTCCTCCTCGAC------------CTCCTCGACGTCATCCTTCCGCCGCACG-----
-------------------GGCG---GCAGCAGCAGGCTGCACTCGTCGTCGTCGTCGT---TCTCGGATGACGAGGAGA
CGGCCATGGCGACGTGCTTCAGGGTGCGGCACGAGAGCTTCCGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGG
AGCGCGCTGGCGTCCGTCGGTGGCGGCCACGGCGCCGCGGTGCAGAGGGTCTAAACG-----CACTGAACTCGCAGTGTG
CAAGGACGTGCGTTGATACT-----ACTTAATGTCGAGTGGAGTTTTACCCAAGTCGTGTGTTGGTTTTGATTGAGCTTC
TGTAATCCTACTACTAGCAGTGTATATG-GAAATAATCAATGAGCATGGCTATGCATGTTCAGAACTTCAGATCAGATCT
CACATTTCGCCTCATTTGA-------------------------------------------------------------
---------------------------------------CATGTTTGAGTAGACCCACTGAAGAACTC------------
----------------GAGTGTTATCCTGGAAAGTTGATTTGTTCCTACTATACTTGTGTGTTCGTTGGGACATGAATGC
TCAGCAGTGTTGGAAACTGACATGTCCAGAATTCGTGGA-----------------------------------------
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>chr3D_1_TraesCS3D01G097900
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATTTCGGTGGTGATGCGGGTGTAGAACCACTGGGCGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGCGAGCGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAATAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTAAGGGCCGAGAGAGAAGCGGCCG
CGGCGCTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAATAGCCGGGCGGCGG---TGGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCACGAAAGCTGAATAAAACTGTTTCTTATTGATGATTTGATGCGGCATATA
AGAGTATATAAGAGGGTACAAACCGACTTGGGGTAGGGATACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACACTGTTCACCCCAGGCCCCAGCCGTTATCTTGTGGTCGGTGGATGTTGCTTTAGTATAATCTAAAGCGGAG
GAAACCCTTTTTCAGCTATTTTATTGGTTAAC--TAATAACTGATCTTTTTTGATACAACGTCGTAAGTTTTTGCAACGG
GTAGAAGATAAACAAATCCTGCTTAGCCCGTGGATCCAAACAGTGCGAGGTCAAAGGTCGTCTCTACATCGTGGAATCTT
GGACAGCCGAGCAGTAACAAAAGTAATCAGATCAGATACATACTAA----------------------------------
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--CAGCAGCGGGAGACGTGCAAACGGCCAGCCAGCACACTTCTCATTATTAATACAC----------CCACGCTCTCTCT
GCTGCCGACGAGCATAAAACCCCACACTCGCTCCGCATCTCAGTGATCACTCCCTCCTCCTCCTCTGCC-----------
-------------CGATCCCTCTGTCTCTCCGTACCATAGCAGAGACACTTT----CATCCATCCGTCCATGGCGGCCAC
CGT------CGGCAAGGAGAGGGAGGAGGCGGTGGTCCACCCGAACGCGAGGCAGGGGGGCAAGCTCTTGTCCAGGCTGC
TGACGAGGGACAGCTCGGCCGCCGCGCCGTCCTTCCGGGTCTACTACGGCGTGTCCTCCGCCGGCGCGGTGCCGTTCCTG
TGGGAGTCGCAGCCGGGCACGCCCAAGAACGCCATCTCCGATGCCGCGATGCCGCCGCTCACGCCTCCGCCGTCCTACTA
CGCCGCCGGCGGCACCGCCTCCGCCAAGAATCACGCGGCGCGCAAGGGCAAGGTCGCCGGGGGCTACAAGTTCCGGCCGT
CAGGCATCCTGGGCTCCATCCTCATGGCGACGCGTAGGCGGGGCCGGACGACACCGTCGGGC---TCGCCCACCTCGTCC
TTCTCCTCCGCGTCCACCTCCTCCTCCTCCTCGAC------------CTCCTCGACGTCATCCTTCCGCCGCACG-----
-------------------GGCG---GCAGCAGCAGGCTGCACTCGTCGTCGTCGTCGT---TCTCGGATGACGAGGAGA
CGGCCATGGCGACGTGCTTCAGGGTGCGGCACGAGAGCTTCCGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGG
AGCGCGCTGGCGTCCGTCGGTGGCGGCCACGGCGCCGCGGTGCAGAGGGTCTAAACG-----CACTGAACTCGCAGTGTG
CAAGGACGTGCGTTGATACT-----ACTTAATGTCGAGTGGAGTTTTACCCAAGTCGTGTGTTGGTTTTGATTGAGCTTC
TGTAATCCTACTACTAGCAGTGTATATG-GAAATAATCAATGAGCATGGCTATGCATGTTCAGAACTTCAGATCAGATCT
CACATTTCGCCTCATTTGA-------------------------------------------------------------
---------------------------------------CATGTTTGAGTAGACCCACTGAAGAACTC------------
----------------GAGTGTTATCCTGGAAAGTTGATTTGTTCCTACTATACTTGTGTGTTCGTTGGGACATGAATGC
TCAGCAGTGTTGGAAACTGACATGTCCAGAATTCGTGGAATAAAGAATGTCTATCAGCCGAAGAAAAGATTAAACAACCC
TTTCAGCCTGCATGCCAAAATTGTGCTTTTCCTCTCTAACCGAATAATTTTTTTGGCGCTGATATAACAACTGTGTGAGC
TGAAAAGGAAAGAACGCCTAAAAAT-------------AAAAGGAAAAAACGCACGCAGAACTATTCTGTA--CTTTTGT
GGGATGTTTTCTGCAGACTGCAGTCCCCTGTCATTTTCCCTCCACACACAGGAATTGTTTTCTGCATCCTCGCAGTTGCT
GCCATTTGTACGCTCTCTCAA--------GCGCAC----AAGGGAGCAAAAAAGAAA-----GAAAAAACATGTAAGGAT
ATTCCAGAGA-----------------------AAAAAATGGC-------------------------------------
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-------------------ACTGTGACAAGTGCGATGGTACTGTGGATGCACATGACCGCAATACAGT-GGTACATGCTG
AG------------CCCCGAGTAGTGAGGTCGTGAGGAGTGAACGCACATTACCCGCAAAAAAAAAAAAAGGAGTGAACG
CACATGGCTGCAAATCTGCGATACAAGAATACAAATAC----TTATGTTTGAGTAGAAACCAAAATGTTCACTATGCATA
GTGCAATGGCACTGTGATCGCACATGACCACA---------GTGGCATATGCTGAGGGGTGAGGGCCAG--------CAG
TAAGTGCATTTTTGGCTAT-------------------------------------------------------------
-----------------------------------------------TCGGCCATAGGTCG-CCCCATCCATGAGGAGAC
ACGGACGAGACCCAACAAAATAAATATGTT----AACAATTCACTGCTTAATGGCTCTTTCTGAACATCAACC-------
-AGTTCACACTCACCAAATGCAAGTATAGTATTAGCA-----GTACTGTAAGCTGGTGCGGTTCATGTTTAACCGGACAG
G-TTACCTTAAGCAACCCGAATCCGAGACGGACCTTGTATGATTCGTTGACGG---------------------------
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-------------------------------------TAAGAAGATGGTGAAAACTTGTGTGCAACGAACGGGTTTCTCG
CTGCCGCGG---TCACGTGAATGTGAAG----------GAATCCCCGTACGCCTCAGATCCGTTTTCGAGTACTGTCGCA
TCCTTCAGCAGCGACTTGGTTTTGTCCG
>chr3D_1
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATCTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGTGGCGACATGCGAGCGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGC---GGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGATGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTGGGATAGGGGTATAAAACTGACTTGGACTAGAAGTCGTATACCATAATAAA
TACTCTAACA----------------------------------------------------------------------
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>chr2D_1
TGGAGAGCGTTTTTGCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATTTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGCGAGCGCAGGTTGCAGCGACCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGG---TGGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGGTGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTGGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACACGGTT-----------------------------------------------------------------
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>chr2D_1
TGGAGAGCGTTTTTCCGAGCGTCGATGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATTTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCATCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGTGAGCGCCGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTAAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGG---TGGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTTCTTATTGATGATTTGGTGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTCGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGGC
TACTCTAACACATGT-----------------------------------------------------------------
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>chr2D_1
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATCTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAATTGACGGCGACATGCGAGCGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGCGATGGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTATTGCTTATTGATGATTTGGTGCGGCATACA
AGAATATATAAGAGGGTACAAACCGACTTGGGGTAGGGATACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACA----------------------------------------------------------------------
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>chr6D_1
TGGAGAGCGTTTTTCCGAGCATCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGATGATCTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGCGAGCGCAGGTTGCAGCGACCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGG---TGGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGGTGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTGGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACA----------------------------------------------------------------------
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>chr6D_1
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATCTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATTGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGTGAGCGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGAGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGC---GGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGACTAAAACTGTTGCTTATTGATGATTTGGTGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTGGGGTAGGGCTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACAGTGT------------------------------------------------------------------
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>chr1D_1
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATCTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGCGAGCGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGC---GGCGTTGACGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGGTGCGGCATATA
AAAGTATATAAGAGGATACAAACCGACTTGGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACA----------------------------------------------------------------------
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>chr5D_1
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAGATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATCTCGGTGGTGATGCGGGTGTAGAACCACTCGACGATCGCGAGATCGTCTTTCAACC
ATTGCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGCGAGCGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGGTAGTAGTTGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGC---GGCGTTAGCGGAGCCATA
CCCTAAACCCTGGGACTGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGGTGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTGGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACA----------------------------------------------------------------------
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>chr7D_1
TGGAGAGCGTTTTTCCGAGCGTCGGTGTTGCTTTGGAAGAGCTGACGGAGGGAGTGCCAAATGTTGGCAGCGGTGGCGCC
GTCGTGATCGAGCATGTTGAAGATCTCGGTGGTGATGCGGGTGTAGAACCACTGGACGATCGCGAGATCGTCTTTCAACC
ATTCCGGATCGTCGGGGCGGGGAAGACAGTTGGCGGCGACATGCGAGTGCAGGTTGCAGCGGCCGAGGTGGAGATCGAAG
AGATGTCTCCAATGATAGTAGTCGTGGGCGGCGAGATCAAGAACTATGGGGATGTAGGGGCTGACGTCGGAGATTGTGTC
AGCAAGAGATATTGGTGCGGCGAGGATGGGTGCAGGGTAGTTTTGTGGAGCTATGGTGAGGGCCGAGAGAGAAGCGGCCG
CGGCGTTGGCAGCCTTGGCGATGAGTGCGGCCCGGCGCTCGAAGTAGCCGGGCGGCGGT---GGCGTTGGCGGAGCCATA
CCCTAAACCCTGGGACCGGTATCTGATACCATGAAAGCTGAATAAAACTGTTGCTTATTGATGATTTGGTGCGGCATACA
AGAGTATATAAGAGGGTACAAACCGACTTGGGGTAGGGGTACAAAACTGACTTGGACTAGAAGTCGTATACCATAATGAC
TACTCTAACA----------------------------------------------------------------------
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>chr3B_661
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-----------------------GCCCCAGCAGTTATCTTGTGGTCGGCGAATGTTGCTTA---ATAATCTAAAGCGGGA
-AATCCCTTTTTTGGCTATTTTATTGGTTATTAATAATAACTGACCCTTTTTGATACAACGTCGTAAGTTTTGGCAACGG
GTAGAATATAAATGAATCCTGCTTAGCTCATGGATCCAAACAGTGTGAGGTCAAAGGTCGTCTCTGCATCGCGGAATCTT
GGACAGCCGAGCAGTAACAAAAGTAATCAGATGAG----ATACTAA----------------------------------
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--CGGCAGCGGGAGACGTGCAAACGGCCAGCCAGCACACTTCTCATTATTAATCCACGAGAATCCACCCT--CTCTCTCT
GCTGCCGACGAGCATAAAACCCCACACTCGCTGCGCACCTCAGTGATCACTTCCTCCTTCTCCTCTGCAA----------
-CTTGCAAGGACACGATCCCTCTGTTTCGCTGTAC-AGAGCAGAGACACGTC----GATCCATCCATCCATGGCGGCCAC
CGTCGGCAACGGCAAGGACAGGGAGGAGGCGGTGGTCCACCCGAACCCGAGGCAGGGGGGCAAGCTCTTGTCCAGGCTGC
TGACGAGGGACAGCTCTGCCGCCGCGCCGTCCTTCAGGGTCTACTACGGCGTGGCCTCCGCCGGCGCGGTGCCGTTCCTG
TGGGAGTCGCAGCCGGGCACGCCCAAGAACGCCGTCTCCGACACGACGATGCCGCCGCTCACGCCTCCGCCGTCCTACTA
CGCCGC---CGGCGCCGGGGCCGCCAAGAAGCACGCGGCGCGCAAGGCCGC---CGCCGGGAGCAACAGGTTCAGGCCGT
CCCGCATCCTGGGCTCCATCCTCATGGCGACGCGGAGGCGGGGCCGGACGACGCCGTCGGGC---TCGCCCACCTCGTCC
TTCTCCTCCGCGTCG------------ACCTCGTCATCGTCATCCTCCTACTCGGCATCTTCGTTCCGCCGTACCACGCA
GTCGCCGATGCGGGCCGGCGGCAGCAGCAGCAGCAGGCTGCACTCGTCGTCGTCGTCGT---TCTCGGACGAGGAGGAGA
CGGCCATGGCGACGTGCTTCAGGGTGCGGCACGAGAGCTTCAGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGG
AGCGCGCTGGCGTCCGTCGGTGGTGCCGCGGCGCATCAGGCGCAGAGGGTCTAACCGAACTACACTAAACTCGCGGTGTG
CAAGGACGTGCGTTGT---T-----ACTTGATGTCGAGTGGAGTT-TACCCAAGTCGTGTGTTGGCTTTGATTGAGCTTC
TGTAATG---CTACTAGCAGTGTATATGAGAAATAATCAATGAGCATGGCTATGCATGTTCAGAACTTCAGATCAGAACT
CTCATCATCTCCTTGCAGACCGAAGACCTTGCTGTAGTGCCAATCTGACCATCTTTCTTCTCTGGAGCAAGTGCATTTTA
AGTTTTCTTTTCTGCCGAAAAAGTGTTTGAGTGTTAATCCATGTTTTCTTCTCTGGAGCAAGTGCATTTTAGGTTTTCTT
TTGTTAATCCATGTTTGAGTGTTATCCTGGAAAGTTGATCTCTTCCTGCT-------TGTGTTAGTTGGGAAATGAATGC
TCAGCAGTGTTGGAAACTGACATGTCCAGAATTCGTGGAATAAAGAATGTCTATCAGCCGAATAAAAGATTAAACAACCC
TTTCAGCCTGCATGCCAAAATTGTGCTTTTCCTCTCTAACTGAATTATATTTTTGGCGCTG-TCCAACAACTGTGTGAGC
AGAAAAGGAAAAAA---ACGCCTTGTTTAACAAAAACGAAAAGGAAAAAACGCACGCAGAAGTATTCTGTA--CTTTTGC
GGGATGTTTTCTGCAGACTGCAGTCCCCAGTCATTTTCCCTGCACACACGGGAATTGTTCTCGGCATCCTCGCAGTTGCT
GCCATTTGTAGGCTCTCTCAA--------GCGCAC----AAGGAAGCAAAAAATAAATAAATGAAAAATCATGTTTAGAT
GAAGAAGAAGAAGAAGAAGAAAAATGGGT---------------------------------------------------
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-------------------ACTGTGTCAAGTGCGATGGTCCTGTGAATGCACATGACCGCAATT---------CATGCTG
AG------------CCCTGAGTAGTGTGAGATCGTG---------------------------------AGGAGTGAATG
CACATGGTTGCAAATTTGCAATACAAGACTGCAAATAT----TTATGTTTGAGTAGAA-CCAAAATGTTCACTATGTGTA
GTGCAATGGCACTGTGATCGCACATGACCACA---------GTGGCATATGCTGAGGAGTGAGGGCTAG--------CAG
TAAGTGCATTTTTGGCTAT-------------------------------------------------------------
-----------------------------------------------TCGGCCGTAGGTTG-CCCCATCCATGAGGAGAC
ACCGATGAGACCCAACAAAATAAATATGTT----AACAGTTCACTGGTTAATGGCTCTTTCTGAACATCAACC-------
-AGCTCACACTCACCAAGTGCAAGTATAGTACTGGACTGATGGTACGGTAAGCTGGTGCGGTTCATGTTAAACCGGACAG
G-TTACCTTAAGTAACCCGAATCCGGGACGAACCTTCCATGATTCGTTGACGGTAACAAGATGGTGAAAACTTGCGTGCA
ACGGACGGGTTTCCCGCTGCCGCAGTCACGTGAATGTGAATCCCCGCACGCTTCAGATCCGACTTGGAGTACTGTCGCAA
CGACATGGTTTTGTCCTTTGTTGAGATGTTTTGTACTGTACTATACTACAACTGTTGACCCGGACAGAAGGACCGTGGCT
TGTTCGTCTGACTTGGACATAGGCAATGCCATGTGTCGCTGTGTCATCAAGCGAGCGGCCAAGAAAGAAGGTCCTCCATC
CAATGCCCCAGGGAAAAGGGTTGGGGTTTGAGTTGGAGTTCACAACGAGGGAAAGATGGTGAAACAAAGTTGTGGTGAAA
CAGAGAGGGTTTGAGTGCGGTGCCGGGTTAATAGGGTGGGTTAATATAGGAGCGTTAAGGCGATATGAATGAATGTTGAT
CATTAAACTGTGTGCCGTCATAATGCAGATGGACAAGGGTAAGAAGGTCGTGCCGCCGCCATTGGTCGAAGTGCCGGTGC
AGGATCACCCAAGCGCCAAGTGGAGGAACTATATGACCACTACTATGAGGAGTCGGGACCAAGCCACTTCTGCAAGGTTA
TCCTTGCTCCGAATCTAGACAGTTTGCTAATGCCTCTGTAGTTCACGAAGCACTTCCCCGCCATCCCTGCAGAGTTCAGA
CTCAAGACGAACACCGGCTGCACATGGAGGATGACGGTGAGGATGGTCAACGACAGGATCACCCTTGATCAGGGTTGGGC
CACCTTCGCCGCCGTTCACCAGATAATGATCGGGTACATGCTGACGCTCAAGTTGCTGATCTCCGGCACCAAGGATGGCA
ATTTTACCCACGTGTATGGGTACCCGCGGGTACCGTACCCACATGGGCAGGGTATGGGCACATTTTTATACCCATGGATA
GTACCCATATCCTATCCGTTAAGTCATGGGTAGGGTATGGGTATAGCCTTGTACCCGCAGGTATACCCATACCCTGCCCG
CTTGTGAACTAATGTTAAGTCGTCATGAATTAATCATTCACTTGTCACGTGACTTGTCTACTACCATTGACTTGTGAGTA
TGTTGTACTCATGTATCTGTTATTGAGCTGAGAGAATTGATTTTTTTCATTAAATGTGCTATCAATGAGTGCAAAATGTG
AACAACTCATATATTGTTTGTTCTACCCGCCGGGTACCAAATGAGTACAGGTATTCGTCGGGTATGGGTACATGTAAGGT
TTCATACCCATGGGTACGGGTATGGGTAAAATTTTATATCCATTAACTATACGGGTATGGGTATGATATTGCTCTACCCT
GCCCATACCCTACCCATTGCCATCCTTACCCGGCACCATGAAGGTGATTGTATTCAACGACAAGGCCGTGGAGGTGGTCA
CCAAGTGCAAGGAGCACGACAATGCCTTCGTTGTGACCGCGTGAGCTCTTGTTGCCCCTTCCTTGTTGGTTGTTGGTTTA
AAACTTGTGTTTCATTTAAAACTTATTGTACTATGTTGGTTTAAAACTTGTGGTGCGCGATTAAGACTTGTGTTTTGGTG
TCTAAATTTGTTCTGTTGCGCTAGTCTAGTTCTTAGTAGTCCATTTGTGCCTCTAGTAACCTCACCACATCGAGGAAAAG
ATTACCACACAACTGTTCTGAATGTAATCAAACAACCGGTCTTGTTTTTTTTTCTGAAACAAGTCCGCAACCAAACATCA
TGCCTTTCGTTTCGGTAGATGCAGACTAGAAGGGATGCATGTAACCAATCAACATGAGGATGTTAGTTTTTTGCCTACAC
ATGCTCAGCCAGACCTAATTAAAACAAATATGCAAAGAGGCAAAAAATGATACAGATAACCAAACGCATCCTAATTAACC
TGAATCCGGGACGAACCTTCTACGATTCGTTTGACGGTAAGAAGATAGTGAAAACTTGTGTGCAACGAACGGGTTTCC--
CGCTACCGCGAATCACGTGAATGCGAACCCCCTTT--------CCCGTCCGCTTCAGATCCGTTTTGAAATACTGTTTCA
TACTTGAGC-------------------
>chr3A_784
--------------------------------------------------------------------------------
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--------------------------------------------------------------------TTTTTGCAACGG
GTAGAAAATAAATTAATCCTGCTTAGCTCATGGATCCAAACAGTGCGAGGTCAAAGGTCGTCTCTGCATCGTGGAATCTC
GGACAGCCGAGCAGTAACAAAAGTAATCAGATCAGATACGTACTAAGGGCATGTACAATGGTGCTATCTTAAGAGTGCCA
CGTAGAATAAATGATAATGTGAAGGAGAGAGAACTCATAAGAAAAGGCTTGTCTTCTCTTATTTAAAAAAAGACAAGAGA
TGATCTCTTAGCACAATATGTCTCACCACATTTTTAGGAATGACTAGTTATTGAAGATAAGGCTAAGAGATGATCCATTG
TAGACTTTTTTTTTGTCATATCTAAATTACATGCAAGACTTAAGATAAGACTACCTTATTAACCATTGTACATGCCTAAC
AGCAGCAGCGGGAGACGTGCAAACGGCCGGCCAGCACACTTCTCATTATTAATCCAC----------CCT--CTCTCTCT
GCTGCCGACGAGCATAAAACCCCACACTCGCCGCGCATCTCAGTGATCACTTCCTCCTCCTCCTCTGCAAGACTCCAGCA
ACTTGCAAGGACGCGA-------------CCCTGCCAGAGCAGAGACACGTCGGTGCATCCATCCGTCCATGGCGGCCAC
CGT------CGGCAAGGAGAGGGAGGAGGCGGTGGTCCACCCGAACGCGAGGCAGGGGGGCAAGCTCCTCTCCAGGCTGC
TCACCAGGGACAGCTCGGCCGCCGCGCCGTCCTTCCGGGTCTACTACGGCGTGGCCTCCGCCGGCGCGGTGCCGTTCCTG
TGGGAGTCGCAGCCGGGCACGCCCAAGAACGCCGTCTCCGACGCCGCGATGCCGCCGCTCACGCCGCCGCCGTCCTACTA
CGCCGCTGGAGGCACCGCCGCCGCGAAGAAGCACGCGGCGCGCAAGGCCGC---CGCCGGGGGCAAGAGGTTCAGGCCGT
CCCGCATCCTGGGCTCCATCCTCATGGCGACGCGGAGGCGGGGCCGGACGGCGCCCTCGTCGGTATCGCCCACCTCATCC
TTCTCCTCCGGGTCG------------TCCTCGTC------------CTCCTCGACGTCGTCCTTCCGCCGCGCG-----
-------------------GGCGGCAGCAGCAGCAGGCTGCACTCGTCGTCGTCGTCGTCGTTCTCGGACGACGAGGAGA
CGGCCATGGCGACGTGCTTCAGGGTGCGGCAGGAGAGCTTTCGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGG
AGCGCGCTGGCGTCCGTCGGCGGCGGCCACGGCGCCGCAGTGCAGAGGGTCTAACCG-----CACTGAACTCGCCGTGTG
CAAGGACGCGCGTTGATACTACAGTACTTAATGTCGAGTGGAGTTTTACCCAAGTCGTGTGTTGGTTTTGGTTAAGCTTC
TGTAATGCTGTGGT----AGTGTATATGAAAAATAATCGATGAGCATGGCTATGCATGTTCACAACTTCAGATCAGATCT
CTCATCTCC---------------------------------ATTTGACCATTTTTCATCATTT----------ATTTGT
GGTTTTCTTTTCTGTTAGGAAT-------AGTGTTACTCCATGTTTGAGTAGACCCACTGAATAACTC------------
----------------GAGTGTTATCCTGGAAAGTTGATTTCTTCTTATGCTGCTGGTGTGTTGGTTGGGACATGAATGC
TCAGCAGTGTTGGAAACTGACAGGTCCAGAATTCGTGGAATAAACAATGTCTATCAGCCGAACAAAAGATTAAAGAACCC
TTGCAGCCTGCATGCCAAATCTGTGCTTTTCCTCTCTAACGAAATTATTTTTCTGGCGCTGATCGGACAACTGTGTGAGC
TGAAAAGGAAAAAACTCCTTGCTTAA-----AAAAACGAAAAGGAAAAAACGCACGCAGAACTGTTCTGTA--CTTTTGT
GGGATGTTTGCTGCAGACTGCA-TCCCCTGTCATTTTCCCTGCACACACGAGAATTGTTTTCTGCATCCTCGTAGTTGCT
GCCATTTGTACGCTCTCTCAA--------GCGCATGAGGAAG--------AAGTAGA-----AGAAAATCATGTTTGCGT
AATTCAGAAGAAGAAGAAATGGCCACTGATTTGATGCTCTAAAAGCATCCCTCGTCAAAAACACGTGCGGGGTAAACTGT
CGCTTTAGCGCGCGCGGGGCGTTTTCGCGCGCTCCAGCGAAGGCGGAAACTAGCGCGCGGGAAAAGGTTGCACGCGCGGG
AGGAAGCGGTCAGCCGCGCGCTAGATTTGGCGCACCACTTCCGGCGCGCCTATAAATTGAGGCGCTCGCCACGCGCCCCC
CAGACTGCCACGCGTGCTCTCCCCGCCGCCTCCGCCGCTTCGTCTGCTGGGCTTTCTCACCTCTTGCCACCGCCGTGCCA
CCATGTCGCGTGTAGACGTCATCCTCTCTCCTCTTTTCCCCATGCCTGCGTCACTCCTGGCGGCGGCTCAGTCGGAACCC
TAGCCGCCACCGCCCCCTCCCCTACTTCCTCCTCCCTCGCTGTCGCTGGAGGACGCCGGCACGCTAAGTCCGGCCGGCAG
ATGGCGGCGGCGGGGCATTTCCTCGCCCTGCTTTACGCTCTTGCGGCAGGGGAGGTTCTGCTTCTCCACGGCCTCTGTGC
GGCGTGGCGTCGCCGGCGCCGACGAGCCTCCATAGCGCCGTTTGGTGGCTCTCCTCCGGCAGGTCTCGACGGGGTGGCGG
CCCCCTTTTCCTCCTGTCCAAGCTCGTCCGTGTGCTCGTCGTCGGATGTGGCAGCTTGCCGGATCTGGCCAACTCCGACT
GGTTCTGGTCCCATCGGAAGGCTACCCTGGCTGGGGACACTGGTCGTCGCGCGTGGATGCGGTGTGTGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGGCTGCTGGCCTGGTGGTCGCGCAGGCGG
TCTCAGCGAGGGGTCGGCACTGGTTGGAGGTGCTCCCCTTGGTGCTCTGCGAGGTTTGATGGGCGGGGGTTCATGGCCGG
CCGGTTCGGGTAGTTGGTGGTCGAGCTTCACCGGGAGAAATCCTATCTCCGGCCTTTGCGGGAGACTGGAAGCGTTGCTG
CTGTGTGCTGCTCCTCTCCTCTCCCCATGGCATTGGCTCCGGAGGAAAACCTCATATCTACGCGATTTGGCGATGAAGGC
GTCTTCACGTCTTCTTCCTCCTTGAGGCATCGTCTCGGAGCCGACTACAACTAGAGGCTAGTGGTTGGCGGCATCTTCGC
CGCATGGTTTGCTGAGGCGGCCGTTTCGGGGGCATGGATCTCTTTTTGGCAACGATGATGGCGTCGAGAGGATCTTGGGT
CGCGGCTCGGACTTCGGTAGTCGGATCTTACCGGCGTGTCCTAGGTGCTTCTCCGTGGATTGCCTGGTTGCTTTAAAGTC
GGAGCTACGGTGGAGCGAGTCTAGGTGGTGACGATGACAGGCGCTCGGTGGTCAGGAGGCACGGTCGGCACAAGTCCTGC
ATATTTCCCTGGCGATGCCTATTGTCAAAGTCGGAGCTGTCAATTGTTCGTTCGTGTGGCCATTTGTTGGTACGTGCCGT
CGTGGCTTATGTTCCATGTCGATGGCGAGGTTGGCCGGTGGTGCCCATGTCTTTACGAGTTGGGTTGTATCGGTTTTAGC
CAAGTTTTCCGTCAATTAACCGGGCAATTCTCACTTCTTCTTAATCAAGGAAAATGACAAGTCATTTGCCTTGTTTTAAA
AAAAAAAGGACACTGTGTGACTGTGTCAAGTGCGATGGTCCTGTGAATGCACATGATCGCAGTACAGTGGGTACATGCTG
AGCCCGCCCTGAGCCCCTGAGTAGCGTGAGATCGTG---------------------------------AGGAGTGAATG
CACATGGCTGCAATACATGGAAATATTTTGGTTGGGATACATCAATTCCAGAAGCAGAAAGTGTTCG----CTGTGTCTA
GTGCAATGGCACTGTGGCCGCACATGACCGCAACACATACAGTGGTACATGCTGAGGAGTAAGGGCCAG--------CAG
TAAGTGCATCTTTGGCTATCGGCCATCGAGTCGGCTCCTCTGCCGTACTGCACCCTGCCGTTGGCTCATTGACGCATGGG
GCCGAGCCCACATGTTAGTGGATTGACGGCACGAGGAGCTGCGTCCTTCGGCCATAGGTTG-CCCCATCTAT--------
---GAGGAGACCCAACAAAATAAATACAATTTTGAACAATTCAGTGGTTCTTCCTGGCCC--------CAACC-------
-AGCTCACACTCGCCAAATGCAAGTATATTAGTGGACTGGTGGTACCGTAAGCTGGTGCGGTTCATGTTAAACCGGGCAG
GTTTACCTTAAGTAACCCGAATCCGAGACGAACCTTCTATGATTAGTTTGAT----------------------------
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----------------------------------------GATGATAGTGAAAACTTGTGTGCAACGAACGGGTTTCC--
CTCCCACGG---TCACGTGAATGTGAACCCCCCTT--------CCCATCTGCTTCAGATCCGTTTCGAAATACTGTTTCA
TACTTCAGCAACGACTTG----------
>chr3A_1964
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--------------------------------------------TTGAGTAGACCCACT---GAACTC------------
----------------GAGTGTTATCCTGGAAAGTTGATTTGTTCCTATACTACTTGTGTGTTAGTTGGGAAATGAATGC
TCAGCAGTGTTGGAAACTGACATGTCCAGAATTCGTGGAATAAAGAATGTCTATCAGGCCAACAAAAGATCAAAAAACCC
TTGCAGCCTGCACGCCAAATCTGTGCTTTTCCTCTCTAACTGAATTATATTTTTGGCGCTGATCGAACAACTGTGTGAGC
TGAAAAGGAAAAAAGAAACGCCTTGTTT-------------AGGAAAAACCGCACGCAGAACTATTCTGCACTCTTTTTT
GGGATGTTTTCTGCAGGCTGCAGTCCCCTGTCATTTTCCCTGCACACACAGGAATTGTTTTCTGCATCCTCGCACTTGCT
GCCATTTGTACGCTCTCGCAAAAAAAAAAGCGCATGAGGAACGAAGCAAAAAATAAT---------AATCATATTCAGAC
ATCTGAGAAGAAAAAATAGAAAAATGGAAATGGAAAAATGGGC-------------------------------------
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-------------------ACTGTGACAAGTGCGATGGTCCTGTGAATGCACATGACCGCAATACAGT-GGTACATGCTG
AG------------CCCCGAGTA--GTGAGGTCGTG---------------------------------AGGAGTGAATG
CACATGGCTGCAAATGTGCAATACAAGAATGCAAATACGTATTTATGTTTGAGTAGAAACCAAAATGTTCAATGTGAACA
GTGCAATGGCACTGTGATCGCACATGACCGCA---------GTGGCATATGCTGAGGAGCGAGGGCCAGCAGTAAGCCAG
TAAGTGCATTTTTGGCTAT-------------------------------------------------------------
-----------------------------------------------TCGGCCGTAGGTATACCCCATCCATGAGGACAC
ACGGATGAGACCCAACAAAATAAATACTATCTTGAACAATTCACTGCTTCTTTCTGGCCC--------CAACCAGCTCAG
TAGCTCACCCTCGCCAAATGCAAGTATAGTAGT-----------ACTGCATGATGGTGGGATTCATGTTTAACCGGAAAG
G-TTATCTTAAGTACCCCGAATCCGGGACGAACCTCGACGA---------------------------------------
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-------------------------------------TAAGAAGATGGTGAAAACTTGTGTGCAACGAACGGGTTTCC--
CGCTGCCCTCAGATCCGCTTTGGAACGGCGTAGAATGTGAATCCCCGTACGCTTCAGATCCGCTTTGGAGTACTGTCGCA
TCCTTCACCAGCGACTTGGTTCTGTCCG
>SNPs
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-------------------------------------S------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------SSSSSSSS--------S----------------S-S---------SSSS--------------SS
S--S--------SS----------------SS------------S-S---------------------------------
------S-----SS-------------S-S-----------------------------------S--------------
--------------------------------------------------------------------------------
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-----------------------------------------------------S---------------SSS--------
--------------------------------S------------------S----------------S-----------
-------------------------S--S--------S-----------S-S----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------S-------S--------------------------------------
------S------------S----------S----------------S-SSSSS----------S---S----S------
-SS-------------------------------S-----------------S---------------------------
--------------SSSSSSSSSSSSS------S-------------------------S--------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------S-----
--------------------------------------------------------------------------------
------S--S----------------------------------------------------------------------
-S---S--SS-SSSSSS---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S------------S----------------
--------------------------------------------------------------S-----------------
----------------------------------------S----S-----------------SS---------------
-----------S---S---SSSSSS-------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------S---------S--------------S-----SS----
---S----SS----------------------------S-----------------------------------------
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---------------------------------------S-----S----------------------------------
--------------------------S-SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-
------------------------------S---------------------------------------------S---
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-----S--------------------------------------------------------------------------
---S---------------------------S-S-SS-------------------------------------------
------------S-----------------S-------------------------------------------------
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-----------------------------------------------------------------------------SSS
--S--S----------------------------------------------S-------------S-------------
---------------------S------
>forward_701
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-----------------------------------------TGGTCGGTGGATGTTGCTTT-------------------
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>reverse_5081
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----------------------------------------GAACGCACATTACCCGCAAA--------------------
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----------------------------
