>input_sequence_60957
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---------------ATGGAGATGAAGGAGAGACAGCGGTGGCGGCCTGAGGAAGACGCCATCCTCCGCTCCTACGTCCG
GCAGTATGGCCCCCGCGAGTGGAACCTGGTGGCGCAGCGCATGAACGTGCCCCTCGACCGCGACGCCAAGTCCTGCCTCG
AGCGCTGGAAGAACTACCTCCGCCCCGGCATCAAGAAGGGCTCCCTCACCGACGACGAGCAGCGCCTCGTCATCCGCCTC
CAGGCCAAGCACGGCAACAAGTGGAAGAAGATCGCCGCCGAGGTGCCTGGCCGGACGGCGAAGCGGCTCGGCAAGTGGTG
GGAGGTGTTCAAGGAGAAGCAGCAGCGGGAGATCAGGGACAGCCGGAGGCCGCCACCTGAGCCCAGCCCCGACGAGAGGG
GAAGGTACGAGTGGCTGCTCGAGAACTTCGCCGAGAAGCTCGTCAAGGAGAGGCAGCAGGTGGGAGTGGGCGCGACGCCG
CTGCAC---CACCACCTCATGGCGGCTCCCATGCTCCCGCCCTGGATGTCGTCCACCGCTACCAACGGCGCGCCCGTCTC
TCCGGCGCCACCGTCGCCGTCCGTGACGCTCAGCCTTGCCTCCGCCGTCGTCCCGCCCCCGACCGCCGCGCCGTGGATGC
AGCAGCAGCAGCAGATGGCGGAG-----GACGGCGCCGCGTTCGGGTTCGCCAGGCCGCCACCGGCGCCGGGCATGGTGC
CGGATGCTCCTCAGGCAGCGCTGGCGGAGCTGGCCGAGTGCTGCAGGGAGCTGGACGAGGGGCACCGCGCGTGGGCCGCG
CACCGGAAAGAGGCATCGTGGAGGCTGAAGCGCGTGGAGCTGCAGCTGGAGTCGGAGCGCGCGTGCCGGCGGCGCGAGGC
CGCGGAGGAGTTCGAGGCCAAGATGCGAGCGCTGTGGGAGGAGCAGGCGGCCGCCGTGGAGCGCCTGGAGGCGGAGTACC
GGGAGAAGGTGGCCGGGCTCCGGCGTGATGCCGAGATCAAGGAGCAGAAGATGGCGGAGCAATGGGCCGCCAAGCACGCC
CGCCTTACCAAGTTCCTTGAGCAGGTCGGCTCGTCGTGCCGCCGCTGGCCGCCCGGCGAGATGAACGGCCGCTGA-----
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>chr5B_1_TraesCS5B01G086900
CCGGTATCATCACATTGATTTGAATTTGGATTTGCTTCTGTCCCTTGCTCATTCTCTCACTTTGTTGTTTTCCTTGGGTA
TGAGGTAGGCATTTCACCAGATTATGTAGAGTGTCCTTGAATCTTGATTGATATCATCACCCAAGTTAATGCTAGATTGC
GACATGGGTCTAGATATAAGACAAGCCT-TGCAGTTGCTCATCACTCAGCTGTACTTAAGGTTTAATTCTCTGTGAGTTC
CTCTCTACCACTGGGTCGTGGTGAAAAAATCGCTAGA-AATTTCGCCTTTGCTTCAAGAAAGGTGTGCTGCAGGTTATGC
TGCCACTTGGGTGGTACTATTAGCAGTAATCCTGAACAATTTTCTTTATGCCAAGTAGAAATACAGTATGTAGTTGCATG
TACTCCTAGTAGTAGACTAGTGGTAGCCTAGACAGGTGTGGTGCAGATGAGAGTAAGGCTGGTCATAGTGGAGAGTAACT
TAGACTAGTAACATATGTATGTTACTAGTCTAAGTTACTACCTTCATAGTGGGTAGTGTCATAGGTGTGGTAACATAGTT
GCCTTCATTTATTACTTTATAGACTCATTATGCATTGGAAACCGCTATGTGATGGTAACATATTATGTTACTCTATTTGC
CTCTCTCCTCATTAACTACTTGCCACATCACTAATTTTGCTTATGTGGCATCTATGTTACTACCTATGTTACTCCCACTA
TGACCAGCCTTGCATCCCTCAACTGAAACCTTATTAATGGCACAATGAATAAAGCAGCTAA----ACCACCAGCCA----
----------------------------TCTCTCTCTCTCGTTACTTTTTCTTGTCTGAAGATTATCACTGCCGCTGCGC
GCGCCTTGTACTTTTTGAAGACG---ATCTTTGACTTGCAAGGGGCTAATTTGATTTCTTTTTTCTTTTCCTTCATGGAT
GGATGGACGGCC-----------GGATGGATGCAGAGTGCATTATGAGGAGTGAGGAGGTGGGATGGGCGATGGCCTGTG
GTGCAGGTG---CAGATGGAGATGAAGGAGAGACAGCGGTGGCGGCCTGAGGAAGACGCCATCCTCCGCTCCTACGTCCG
GCAGTATGGCCCCCGCGAGTGGAACCTGGTGGCGCAGCGCATGAACGTGCCCCTCGACCGCGACGCCAAGTCCTGCCTCG
AGCGCTGGAAGAACTACCTCCGCCCCGGCATCAAGAAGGGCTCCCTCACCGACGACGAGCAGCGCCTCGTCATCCGCCTC
CAGGCCAAGCACGGCAACAAGTGGAAGAAGATCGCCGCCGAGGTGCCTGGCCGGACGGCGAAGCGGCTCGGCAAGTGGTG
GGAGGTGTTCAAGGAGAAGCAGCAGCGGGAGATCAGGGACAGCCGGAGGCCGCCACCTGAGCCCAGCCCCGACGAGAGGG
GAAGGTACGAGTGGCTGCTCGAGAACTTCGCCGAGAAGCTCGTCAAGGAGAGGCAGCAGGTGGGAGTGGGCGCGACGCCG
CTGCAC---CACCACCTCATGGCGGCTCCCATGCTCCCGCCCTGGATGTCGTCCACCGCTACCAACGGCGCGCCCGTCTC
TCCGGCGCCACCGTCGCCGTCCGTGACGCTCAGCCTTGCCTCCGCCGTCGTCCCGCCCCCGACCGCCGCGCCGTGGATGC
AGCAGCAGCAGCAGATGGCGGAG-----GACGGCGCCGCGTTCGGGTTCGCCAGGCCGCCACCGGCGCCGGGCATGGTGC
CGGATGCTCCTCAGGCAGCGCTGGCGGAGCTGGCCGAGTGCTGCAGGGAGCTGGACGAGGGGCACCGCGCGTGGGCCGCG
CACCGGAAAGAGGCATCGTGGAGGCTGAAGCGCGTGGAGCTGCAGCTGGAGTCGGAGCGCGCGTGCCGGCGGCGCGAGGC
CGCGGAGGAGTTCGAGGCCAAGATGCGAGCGCTGTGGGAGGAGCAGGCGGCCGCCGTGGAGCGCCTGGAGGCGGAGTACC
GGGAGAAGGTGGCCGGGCTCCGGCGTGATGCCGAGATCAAGGAGCAGAAGATGGCGGAGCAATGGGCCGCCAAGCACGCC
CGCCTTACCAAGTTCCTTGAGCAGGTCGGCTCGTCGTGCCGCCGCTGGCCGCCCGGCGAGATGAACGGCCGCTGACCGCG
CGCT---GGCTGCTTTCTTGCACGCGCAACATCCAAATCTCCAACAAGACGATGGCATCGCATGCTTGTTCGTTGAG---
CTTCTTTAGTTTTCTTCTCTTTTA---CAACCGTTGGAAGCTTCACTTCTCACTCTAGTCTAGCTGATCAGAAAATGTAA
GCCGTTGCTGCTGCTACTGCCTTAATTTCACTTATTTTCGGCCTGTCATTGATCATGCCAATCATCGTTTCTTAGCAATA
AATAAACATTTGGAAATCCAAGACAAGTTCAACAAGAAATTATTTGATCGTGTCGTGGGCATCAAACTGTAACTTCTATG
AAAAAGATCCATTCGATGTGACCAGGCGTCATGGTAAGCTATCAAACAAAAGAAGTAGAGTACATGGTATACAACAATTG
ATTTCAGGTGATGTAGTGTCCAA----------TGCAGCAGGGTGCATTGCTAAGAGAAATTTTGGAACCCCATACGTTG
GCATCAGCATTCAATCTTACATTTTTCTCAAGAATACAAAGATTCATTTAACAAGAAAGGCCACTAACATGATCTAGCAA
CAGTGCCTAAAAAGTTGTGGTGTTCTAAGCGTCAATCTGCAGGGCACACATCTGATGACGGCGAGACACAACAATATTGT
TTCATCTGTAACAAGACAAATCACCCTATGACCATGCGTCGGTGTCCTGCTCTCAAGATGCCGAAGCCGATGGCGATGCT
TTGCGGATATGAAACTGAAAATATGGCCTTCTTTCATATGCCTGACAATGTCTGTAGGGAGGATCTCTCACCACAGAATT
CACCAACGGCGTTGGTATCAGTTTCTGGCAGCTCTATCACCCCCAGTATCGTGGAGGCAGAGGTTGCTAAGATTGCTCAG
TTTCAGCAGCAGTGGACTTGGGAGGCTATACTGCATGGCTAGGATGCTTTTCTCATGTCCTTCCCAAGCAAGGAAGTTCT
ACAGAGGGTGACTGGGTTTGCAGTTTTCATCATGTCTCACAATGTCACTATCGA
>chr5D_1
CCGGTATCATCACATTGATTTGAATTTGGATTTGCTTCTGTCCCTTGCTCATTCTCTCATTTTGTTGTTTTCCTTGGGTA
TGAGGGAGGCATTTCGCCAGATTATGTAGAGTGTACTC-------GATTGATATCATCACCCAAGTTAATGCTAGATCGC
GACATAGGTCTAGATATAAGACAAGCCTTTGCAGTTGCTCATCACTCAGCTGTACTAAAGGTTTATTTCGTTGTCAATTC
CTCTCTATCACTGGGCTGTGGTAAAAAAAATGACTTGGAATTTCCCTTTTGTTTCAAGAAAGGTGTGCTGCAGGTTATGT
------------------------AGTAATCCTGAACAATTTTTTG-ATGCCAAGTAGAAATACAGTAGTATGTAGTTGC
----------------CTAGTAGTAGCGTAGACAGGTGTGCTGCAGATGAGAGTAA------------------------
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----------TGCATCCCTCAACTGAAACCTTATTAATGCCGCAATGAATAAAGCAGCTAAGGGAACCAGCAGCCA----
----------------------------TCTCTCTCTCTCGTTACTTTTTCTTGTCTGAAGATTATCACTGCCGCCGCT-
GCGCCCTGTACTTTTTGAAGACT---ATCTTTGACTTGCAAGGAGCTAATTTGATTTATTTTTTCTTTTCCTTCCTGGAT
GGATGATGGATGGACGGTCGGATGGATGGATGCAGAGTGCATTATGAGGAGTGAGGAGGTGGGATGGGCGATGGCCTGTG
GTGCAGGTGGTGCAGATGGAGATGAAGGAGAGACAGCGGTGGCGGCCTGAGGAAGACGCCATCCTCCGCTCCTACGTCCG
GCAGTATGGCCCCCGCGAGTGGAACCTGGTGGCGCAGCGCATGAACGTGCCCCTCGACCGCGACGCCAAGTCCTGCCTCG
AGCGCTGGAAGAACTACCTCCGCCCCGGCATCAAGAAGGGCTCCCTCACCGACGACGAGCAGCGCCTCGTCATCCGCCTC
CAGGCCAAGCACGGCAACAAGTGGAAGAAGATCGCCGCCGAGGTGCCTGGCCGCACGGCGAAGCGGCTCGGCAAGTGGTG
GGAGGTGTTCAAGGAGAAGCAGCAGCGGGAGATCAGGGACAGCCGGAGGCCGCCGCCTGAGCCCAGCCCCGACGAGAGGG
GGAGGTACGAGTGGCTGCTCGAGAACTTCGCCGAGAAGCTCGTCAAGGAGAGGCAGCAGGTGGGAGTGGGCGCCACGCCG
CTGCAC---CACCACCTCATGGCGGCTCCCATGCTCCCGCCCTGGATGTCGTCCACCGCCACCAACGGCGCGCCCGTCTC
CCCGGCGCCACCGTCGCCGTCCGTGACGCTCAGCCTCGCCTCCGCCGTCGTCCCGCCCCCGACCGCCGCGCCGTGGATGC
------AGCAGCAGATGGCGGAG-----GACGGCGCCGCGTTCGGGTTCGCTAGGCCGCCACCGGCGCCGGGCATGGTGG
CGGATGCTCCTCAGGCAGCGCTGGCGGAGCTGGCCGAGTGCTGCAGGGAGCTGGACGAGGGGCACCGCGCGTGGGCCGCG
CACCGGAAAGAGGCATCGTGGAGGCTGAAGCGCGTGGAGCTGCAACTGGAGTCGGAGCGCGCGTGCCGGCGGCGCGAGGC
CGCGGAGGAGTTCGAGGCCAAGATGCGAGCGCTGTGGGAGGAGCAGGCGGCCGCCGTGGAGCGCCTCGAGGCGGAGTACC
GGGAGAAGGTGGCCGGCCTCCGGCGTGATGCCGAGCTCAAGGAGCAGAAGATGGCGGAGCAGTGGGCCGCCAAGCACGCC
CGCCTCACCAAGTTCCTCGAGCAGGTCGGCTCGTCGTGCCGCCGCTGGCCGCCCGGCGAGATGAACGGCCGCTGACGGCG
CGCCACCGGCCGCTTTCTTGCACGCGCAGCATCCAAACCTCAAG-AAGACGATGGCATCGCATGCTTGTTCGTTGCACAA
CTTCTTTAGTTTTCTTCTCTTTTA---CAACTGTTGGAAGCTTCACTTCTCACTCTAGTCTAGCTGATCAGAAAATGTAA
GCCGTTGCTGCTGCTACTGCCTTAATTTCACTTCTTTTCGGCCTGTCATTGATCGTGCCAATCATCGTTCCTTAGCAATA
AATAAACATTTGGAAATC-AAGACAAGTTCAACAAGAAATTATTTGATCGTGTCGTGGGCGTCAAAATGCAACTTCTGTG
AAAAAGATCCATACGATGTGACCAGGCGACATCGTAAGCTATGAAA------AAGTAGTG-----------CAACAAATG
ATTTCAGGTGATGTAGTGACCAA----------TGCAGCAAGGTGCATTGCTAAGAGAAA-TTTGGAACCCCATACGTTG
GCATCAGCATTCAATCTTACATTTTTCTCAAGAATACAAAGGTTCATTTAACAAGAAAGGCCACTAA-------------
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>chr5A_1
CCGGTATCATCACATTGATTTGAATTTGGATTTGCTTCTGTCCCTTGCTCATTCTCTCAGTTTGTTGTTTTCCTTGGGTA
TGAGGTGGGCATTTCGCCAGATTATGTAGAGTGTCCTT-------GATTGATATCATCACCCAAGTTAACGCTAGATTGC
GACATAGTTCTGGATACAAGACAAGCCTTTGCAGTTGCTCATCACTCGGCTGTACTTAAGGTTTAATTCGTTGTCAATTC
CTCTCTATCCCTGGGCTGTGGTGAAAAAATGACT----------------------------------------------
--------------------------------TGAACAATTTTTCG-ATGCCAAGTTGAAACAT-GTACGCAGTTGCAAG
TCCTGGTAGTAGC-----------AGCGTACAGAGGTGTGCTGCAGATGAGAGTAA------------------------
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----------TGCATCCCTCAACTGAAACCTTATTAATGCCGCAATGAATAAAGCAGCTAA----ACCACCAGTCATCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTACCTTTTCTTGTCTGAAGATTATCACT---GCCGCT-
GCGCCTTGTACTTTTTGAAGACTACAATCTTTGACTTGCAAGGAGCTAATTTGATTTCTTTTTTCTTTTCCTTCATGGAT
GGATGATGGG------------TGGATGGATGCAGAGTGCATTATGAGGAGTGAGGAGGTGGGATGGGCGATGGCCTGTG
GTGCAGGTG---CGGATGGAGATGAAGGAGAGACAGCGGTGGCGGCCTGAGGAAGACGCCATCCTCCGCTCCTACGTCCG
GCAGTATGGCCCCCGCGAGTGGAACCTGGTGGCGCAGCGCATGAACGTGCCCCTCGACCGCGACGCCAAGTCCTGCCTCG
AGCGCTGGAAGAACTACCTCCGCCCCGGCATCAAGAAGGGCTCCCTCACCGACGACGAGCAGCGCCTCGTCATCCGCCTC
CAGGCCAAGCACGGCAACAAGTGGAAGAAGATCGCCGCCGAGGTGCCCGGCCGCACGGCGAAGCGCCTCGGCAAGTGGTG
GGAGGTGTTCAAGGAGAAGCAGCAGCGGGAGATCAGGGACAGCCGGAGGCCGCCCCCCGAGCCCAGCCCCGACGAGAGGG
GCAGGTACGAGTGGCTGCTCGAGAACTTCGCCGAGAAGCTCGTCAAGGAGAGGCAGCAGGTGGGAGTGGGCGCCACGCCG
CTGCACCACCACCACCTCATGGCGGCTCCCATGCTCCCGCCCTGGATGTCGTCCACCGCCGCCAACGGCGCGCCCGTCTC
TCCGGCGCCGCCGTCGCCGTCCGTGACGCTCAGCCTCGCCTCCGCCGTCGTCCCGCCCCCGACCGCCGCGCCGTGGATGC
------AGCAGCAGCAGCAGATGGCGGAGACGGCGCCGCGTTCGGGTTCGCCAGGCCGCCACCGGCGCCGGGCATGGTGG
CGGATGCTCCTCAGGCAGCGCTGGCAGAGCTGGCCGAGTGCTGCCGGGAGCTGGACGAGGGGCACCGCGCGTGGGCCGCG
CACCGGAAAGAGGCCTCGTGGAGGCTGAAGCGCGTGGAGCTGCAGCTGGAGTCGGAGCGCGCGTGCCGGCGGCGCGAGGC
CGCGGAGGAGTTCGAGGCCAAGATGCGAGCGCTGTGGGAGGAGCAGGCGGCCGCCGTGGAGCGCCTCGAGGCGGAGTACC
GGGAGAAGGTGGCCGGGCTCCGGCGTGATGCCGAGCTCAAGGAGCAGAAGATGGCGGAGCAGTGGGCCGCCAAGCACGCC
CGCCTCACCAAGTTCCTCGAGCAGGTCGGCTCGTCGTGCCGCCGCTGGCCGCCCGGCGAGATGAACGGCCGCTGACCGCG
CG---CCGGCCGCTTTCTTGCACGCGCAGCATCCAAACCTCAAG-AAGACGATGGCATCGCATGCTTGTTCGTTGCACAA
CTTCTTTAGTTTTCTTCTCTTTTATTACAACCGTTGGAAGCTTCACTTCTCACTCTAGTCTAGCTGATCAGAAAATGTAA
GCCGTTGCTGCTGCTACTGCCTTAATTTCACTTCTTTTCGGCCTGTCATTGATCATGCCAATCATCATTTCTTAGCAATA
AATAAACATTTGGAAATC-ATGACAAGTTCAACAAGAAATCATTTGATCGTG-----GGCATCGAAATGCAACTTCTATG
AAAAAGATCCATACGATGTGACCAGGCGGCATGGTAAGCTATCAAACAGAAAAAGTAGTG-----------CAACAAATG
ATTTCATGGTAAGCTATCAAACAGAAAAAGTAGTGCAACAGGGTGCATTGCTAAGAGAAA-TTTGGAACCCCATATGTTG
GCATCAGCATTCAATCTTACGTTTTTCTCAAGAATACGAAGGTTCATTTAACAAGAAAGGCCACTAACATGATCT-----
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>SNPs
-----------------------------------------------------------S--------------------
---------------S----------------------SSSSSSS-----------------------------------
-----S---------------------------------------------------------------SS---S-S---
-------S-------SS-------------S---SSS-------S-S----S---------------------------S
SSSSSSSSSSSSSSSSSSSSSSSS-------------------S-SS---------------------S-S-------S-
-S--SS------SSSS-----S-----S------------S---------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------------------S-S--------------------------------------
---------------------------------------------------------------------------S--SS
----------------------S--------------------S------------------------------------
-----SSS--SS--------------------------------------------------------------------
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-----------------------------------------------------S--------------------------
------------------------------------------------------S-------------------------
-S-----------------------------------------------------------------------S------
-----------------------------------------------------------S--------------------
------------------------------------S-------------------------------------------
SSSSSS-------------------------------------------------------------------------S
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------------------------------------------------------------------S-------------
-----------------------------------S-------------------------S------------------
-----S-----------S--------------------------------------------------------------
---S------S-----------------S--------S---S-SS------------------------------SS---
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---------------------------------S----------------------------------------------
------------------S-----------------------------------------------S--S----------
------------S---------------S-------------------S--S------S-SSSSSSSSSSS------S--
------------------S-----------------------------------------S-------------------
-----------------------------------------S---------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_730
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----------------------------------------------------------------------ACTCCCACTA
TGACCAGCCT----------------------------------------------------------------------
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>reverse_2752
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-------------------------------TCAATCTGCAGGGCACACAT-----------------------------
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