>input_sequence_60939
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--------ATGTCGGACTGCAGCACGGGCACGGACTCGCCGCGGGCCGACTCCGTCGACGAGCAGCCGCCCGCCGACGCC
GAGTCGCCCGGCGGAGGCCAGAGCAAGCGCGACCACCCCTCGCCGTCGTCGCCGCTGCCGCCGCCCAAGCGCAGGTACAT
ACATACACA----------TCTCCATCCATCCATGGAACCAGTCGAATCTCGAATCTTGATTAGGCGGCGGAGGATT---
-------GAATGAGTATGTTTGTTTGGCGATTGCTTGCAGCCGGAGATCTGTGGAGAAGAGGGTGGTGTCGGTGCCGATT
TCCGAGTGCGGCGAGCGGGCCAAGACCAACGGCGAGGGCCCGCCGCCGCCGGACTCGTGGGCGTGGCGCAAGTACGGCCA
GAAGCCCATCAAGGGATCCCCCTACCCACGGTAAGTACTACGCG----------TAGATACAGCTTTGCAGGACAGGCTG
GTAATT----TGCGGCAATT-AAATCATCAGTTACCAAGTAAG--TAGGCTCGTCTGATTTGTGTGAATTACTGTCGC--
---GTGTT-----CAGGGGGTACTACCGCTGCAGCAGCTCCAAGGGGTGCCCGGCGAGGAAGCAGGTGGAGCGCAGCCGC
GCCGACCCCACCGTGCTGCTCGTCACCTACTCCTACGATCACAACCACCCGTGGCCGGCGCCCAAGAGCGGCTGCCAACC
CAACAAGTCCTCTCCGCGGCTGGTGGACCCCAAGCCCGAGCCTGGCACGCCGGTGGAGTGCCAGCCCG------------
---------AGCACGGACCTGAAGCGCCGGAGCACGGGCCTGAAGCGCCGGAGCAAGATCAGGAAGAGGAGCATGAGCAG
AAGCCTGTCATCGGTCTGGCCGACCCCGCGGCGATCACGACGGTGACCGCGGCGGCCGAAGAGGAGGAGGAGAGCTTCGA
CTTCGGGTGGTTCGACCAGTACCCGACGTGGCACCGGACGGCGCTATACGTGCCGGCGTTCGACGTGGCGCCGCCGCCGG
AGGACTGGGAGCGCGAGCTGCAGGGGGAGGACGCGCTGTTCGCTGGGCTCGGCGAGCTCCCGGAGTGCGCCATCGTGTTC
GGCCGCCGGCGCGAGCTGGCCCTGGCGGCCACCGCGCCCTGCTCCTGA--------------------------------
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>chr3B_1_TraesCS3B01G324400
CGTTCACTAGAGCATCTGCACGGCGCATGAAGTATGGTCGA----TGTAGCAAGCAGTACTCAGAAC--CCTCTGCTTGC
GCTACGGGTCAAAAACTGAGAGACATGTACAGAGTGGTGGTGAGCATCGACGTATCCTGGCCGTCGAACTAGAATCTGAT
GCTCCAGTTGGATCGGTACCGAATTTAGCGAACCCGACACCTGCTACA---TACATGATCACGGGCGGCTCGCTGGATCA
GGCAGGCACATCTCATCATC--------------------TCTCGCTCCGGCTCCGCACATGCACAAAACAAA------A
GATGTGCCATGTGTGTACATGG--CGGGAGGCAAGGGCGCGGACATGATTGGCCAGATCGGTTAGCGAGGGGGTCGCCAT
CGCAGCCTCCGCCTAATCTAATCGTCCGCCCTG---------CCCCAAGACGTCGCCCTCCTCGCTCCGGCCCT--CCTC
CTATACGCAACAGCGAGGGA-------GGGAGAGGAGAGCGATCCAATCCAGAACCCGGAC------GCGGG-ACTGCAC
GAAACGCTAAACAAAACAGGCGAAAACGCTGCGCGCACACACAACACA--------TCCATTCCATACAGTAGTAGTACG
CGCACCCGGTGGATGGCAACATCGTGCGCATAAACAAAAGCGTCCGTCCACCAGCGCATACGCACGCACATATACAACAA
ACGCGCACGTAGCAGGGGGGCGGATCATTGAAAGCTGCACCCATCCGTCCCCATTTGCTCGCCACCGTTTCCACCATCCC
CCCATCCATCACTCGACCCGGTCC----TGTACTACTACTACTCGCCTCCACCCCTCTTCCTT---------CCTGACA-
--GTACACTTCGTTGTGGCAGCCGGTGATCATCATCAA-----AGCCCACAGATATATACGCTTTCGGAAAGCCGGGGTT
GGTTTCGCTTTGAGCTTTTTATCCGGAG------------CAGCCAGCCGCCGGGCCGGGACTTC-----TGTTAGCCCA
ACCC-----AGATAGCTCCGTCCGTG----TCCGATT-CGCCGGGGCCGGGCGTGGATACCTAGGCTAGGC---------
-GCCGCCGATGTCGGACTGCAGCACGGGCACGGACTCGCCGCGGGCCGACTCCGTCGACGAGCAGCCGCCCGCCGACGCC
GAGTCGCCCGGCGGAGGCCAGAGCAAGCGCGACCACCCCTCGCCGTCGTCGCCGCTGCCGCCGCCCAAGCGCAGGTACAT
ACATACACA----------TCTCCATCCATCCATGGAACCAGTCGAATCTCGAATCTTGATTAGGCGGCGGAGGATT---
-------GAATGAGTATGTTTGTTTGGCGATTGCTTGCAGCCGGAGATCTGTGGAGAAGAGGGTGGTGTCGGTGCCGATT
TCCGAGTGCGGCGAGCGGGCCAAGACCAACGGCGAGGGCCCGCCGCCGCCGGACTCGTGGGCGTGGCGCAAGTACGGCCA
GAAGCCCATCAAGGGATCCCCCTACCCACGGTAAGTACTACGCG----------TAGATACAGCTTTGCAGGACAGGCTG
GTAATT----TGCGGCAATT-AAATCATCAGTTACCAAGTAAG--TAGGCTCGTCTGATTTGTGTGAATTACTGTCGC--
---GTGTT-----CAGGGGGTACTACCGCTGCAGCAGCTCCAAGGGGTGCCCGGCGAGGAAGCAGGTGGAGCGCAGCCGC
GCCGACCCCACCGTGCTGCTCGTCACCTACTCCTACGATCACAACCACCCGTGGCCGGCGCCCAAGAGCGGCTGCCAACC
CAACAAGTCCTCTCCGCGGCTGGTGGACCCCAAGCCCGAGCCTGGCACGCCGGTGGAGTGCCAGCCCG------------
---------AGCACGGACCTGAAGCGCCGGAGCACGGGCCTGAAGCGCCGGAGCAAGATCAGGAAGAGGAGCATGAGCAG
AAGCCTGTCATCGGTCTGGCCGACCCCGCGGCGATCACGACGGTGACCGCGGCGGCCGAAGAGGAGGAGGAGAGCTTCGA
CTTCGGGTGGTTCGACCAGTACCCGACGTGGCACCGGACGGCGCTATACGTGCCGGCGTTCGACGTGGCGCCGCCGCCGG
AGGACTGGGAGCGCGAGCTGCAGGGGGAGGACGCGCTGTTCGCTGGGCTCGGCGAGCTCCCGGAGTGCGCCATCGTGTTC
GGCCGCCGGCGCGAGCTGGCCCTGGCGGCCACCGCGCCCTGCTCCTGAC----CACCGCG----CCTCCCGTTCCGATCC
CGTTTTCCCCCTTTCTTTTT-TTTCCTCCGGCTGTAGT-TTTACCCGGAGTAATTTGGAGGTGTAGTACATAGCGTGGAT
CAGATCAAAGGGATTTCGCTGTTCAAGAGTGGCTTTCCGCTTATTTTACTGTCTCGGTTCCGTCGCGATCGCCATATCCA
AGGCCGTGCCCGTGCTTGTGCTGTGCTGCCCGCGCCGCTCCGGGAGCAGTTCCGGTCACGATACACATCCGATTCCAGCG
AAAAGCAGCGAAAGGTTG-CATTTTCAGGCGTTTTTCTCGTCACCCGTGACGCGTAGCGC---------AGATATACACA
TACTCCTCGCCCGGCGCAGAGGCTAGCG-GCAAGTGGCGGCGAACTGGGCAAGTGGCGCGGGATGGTGGTGGTTGGGGGG
AAGCGCACGAGGCCGCCACATGCCGGCCTCGCCACGCGGATCCGCGTGCCCTGCCGAGCCACCATCCTTGCCGGCCACGG
CCGGCTTGGTAATTTGGTGCGTGGCGCGGGCCGGCGGAGCAAATGCCACGGCGCGG-ACGGACGGCTCCACCG---ATCC
GCGGGAAATTT-GCGTGCCGGGCCGGGTCGCGTACGCCGGCTTTGAGTGCGATGTCTTGAATTCGGGCTCTATCTCTGAA
CCGTATTCGTGCCCTGTCGCGGTCAGCCGCC-TGCCCGGTCGTGATATTTTTGGGAGGGGAATCTACCTACAACCAGACA
AACAAATTA-----TTGGGTTGGGTTGGGCCTGGCATGAAAAGATCGAGCCAGCTAGCTTCTGC----------------
-----------------------GAATGAGTACTACTCCCTCTGTCTCATAATACACGAGGGAGTACGTGCGAATCCTTG
GCGTTGTATTCGAGCC---GGTGCTCCAGGAGTTGGGAACCGATGGATGGTGAATAGGTA---GATTCGTGGTGCTCTTG
CCTA--GCACTCCAAAGGACGCTTAACTATCTTATCCTACGAGTTAGGAAGCACACCCACAGGTATTATATCTATGATGA
ACTGCTC
>chr3D_2
-GTTCACCAGAGCAACTGCATGGCGCATGGAGTATGATCGATCGATGTAGCAAGCAGTACTCAGAAC--ACTCCGCTTGC
GCTACGGGTCAAAAACTGAAAAACATGCACAGAGCGGTAGTGTGCATCGACGTATCCTGGCCGTCCAAGTAGAATCTGAT
GCTCCAGTTGGATCGGTACCGAATTTAGCGAACCCGACACCTGCTACG---TACATGATCACGGGCGGCTCGCTGGATCA
GGCAAGCAGGCGGCAAAGTACATCATCATCA---------TCTCGCTCCGGCTCCGCACATGCACAAAACAAAGGGAAAA
GATGCGCCATGTGTGTACATGGGGCGGGAGGCAAGGCCGCGGACATGATTGGCCAGATCGGTTACGGAGGGCGTCGCCAT
CGCAGCCTCCGCTAATTTAATC----------G---------CCCCAAGACGTCGCCCTCCTCCTCTCGCTCCTGCCCTC
CCATACGCAACAGCGTGAGA-------G-----GGAGAGCGATCCAATCCAGAACCCGGAGCCGGAGGCGGG-ACTGCGC
GGAACGCTAAAC-AAACAGGCGAAAACGCTGCGCGCACACACACAACACGTCCAT-----TTCCACACAGTAGTACGCGC
TGCACCCGGTGGATGGCAACATCGTGCGCATAAACAAAAGCGTCCGTCCACCAGCGCACATAT-------------ACAA
ACGCGCACGTAGTAGGGGGGCGGATCATTGAAAGCTGCACCCATCCATCCATCCATC--CGCCACCATTTCCACCATCCC
C----CCATCACTCGACCCGGCCC----TGTACTACTACACCCCCT-------CCTCCTCCGTTCCCCTCGCCCTGATA-
--GTACACTCTGTTGCGGTAGCCAGTGATCATCACCAAAGCCCAGCCCACAGATATATACGCTTTCGGAAAGTGGGGGTT
GGTTTCGCTTTGAGCTTTTTATCCGGGGCAGCCAGCCAGCCAGCCAGCCGCCGGGCCGGGACTTC-----TGTTACGAGT
CCAGAGGCTAGATAGCTCCGCCCGTA----TCCGATTCCGCCGGGGCCGGGCGTGGATACCTAGGCTAGGCT-----AGG
CGCCGCCGATGTCGGACTGCAGCACGGGCACGGACTCGCCGCGGGCCGACTCCGTCGACGAGCAGCCGCCCGCCGACGCC
GAGTCGCCCGGCGGAGGCCAGAGCAAGCGCGACCAACCCTCGCCCTCGTCCCCGCTGCCGCCGCCCAAGCGGAGGTACAT
ACACACATGCACATC----------TCGATCCATGGAACCACTCGAATCTCGATTAGTATTGGTTTACTCTTCTTGAAAC
AACGGAGGATTGAGTATGTTTGTTTGCCGATTTCTTGCAGCCGGAGATCTGTGGAGAAGAGGGTGGTGTCGGTGCCGATT
GCCGAGTGCGGCGAGCGGGCCAAGACCAACGGCGAGGGCCCGCCGCCGCCGGACTCGTGGGCGTGGCGCAAGTACGGCCA
GAAGCCCATCAAGGGATCCCCCTACCCGCGGTAAGTACTACGCG----------TAGATACAGCTTTGCAGGACAGGCTG
GTAATT----TGTGGCAATT-AAATTATCACTTACTAAGTAAGTATAGGCTCGTCTGATTTGTGTGAATTGCTGTCGC--
---GTGTTGTGTTCAGGGGGTACTACCGCTGCAGCAGCTCCAAGGGGTGCCCGGCGAGGAAGCAGGTGGAGCGCAGCCGC
GCCGACCCCACCGTGCTGCTCGTCACCTACTCCTACGATCACAACCACCCGTGGCCGGCGCCCAAGACCGGCTGCCACCC
CAACAAGTCCTCCCCGCGGCTGGTGGACCCCAAGCCCGAGCCTGGCACGCCGGTGGAGTGCCAGCCCG------------
---------AGCAAGGGCCTGAAGCGCCGGAGCAAGAG---------------------CAGGAGGAGGAACATGAGCAG
AAGCCTGTCATCGGTCTGGCCGACCCCGCGGCGATCACGACGGTGACCGCGGCGGCCGAGGAGGAGGAGGAGAGCTTCGA
CTTCGGGTGGTTCGACCAGTACCCGACGTGGCCCCGGACGGCGCTGTACGTGCCGGCGTTCGACGTGGCGCCGCCGCCGG
AGGACTGGGAGCGCGAGCTGCAGGGGGAGGACGCGCTCTTCGCGGGGCTGGGCGAGCTCCCGGAGTGCGCCATCGTGTTC
GGCCGCCGGCGCGAGCTCGCCCTGGCGGCCACCGCGCCCTGCTCCTGAC----CGTCGCGCCTCCCTCCCGTTCCGATCC
CGTTTTCCCCCTTTCTTTTCCTTTCCTCCGGCCGTAGTTTTTACCCGGAGTAATTTGGAGGTGTAGTACATAGCCTGGAT
CAGATCAAAGGGATTTCGCTGTTCAAGGGTG--TTTCCGCTTATTTTACTCCCTCGGTTCCGTCGCGCTCGCCGTACCCA
AGGCCGTGCCCGTGCTTGCGCTGTGCCGCCCGCGCCGCTCCGGGAGCAGTTCCGGCCACGATGCACGTCCGGTTCCACCG
AAAAGCAGCGAAAGGTTGGCATTTTCATGCGTTCTCCTCGTCACCCGTGACGCGCAGCGCACCGCAGATAGACACACACA
CACTCCTCGCCCGGCGCAGAGGCTGGCGGGCAAGTGGCGGCGAACTGGGCAAGTGGCGCGGGATGGTGGCGGTTGGGGGG
ATGCGCACGAGGCCGCCACATGCCGGCCTCGCCACGCGGATCCGCGTGCCCTGCCGCGCCACCATCCTTGCCGGCCACGG
CCGGCTCGGTAATTTGGTGCCTGGCGCGGGCCGGCGGGGCAAATGCCACGGCGCGGCACGGACGGCTCCACCA---ATCC
CCGGGAAATTTTGCGTGCTGGACCGGGTCAAGTACGCCGTCTTTGAGTGCGATGTCTTTAATTCGGTCTCTATCCCTGTA
CCGTATTCGTGCCCTGTCGCGGTCGGCCCCC-TGCCCGGTCGTGATATTTTTGGGAGAGGAATCTGCCTACAACCAGACA
AACAAATTATTGGGTTGGGTTGGGTTGGGCCTGGCATGAAAAGATCGAGCCAACTCAACTGACCCATCTATCCAGCCATC
CAGGCAGGCAAGAAAAGCGAAATGAATGAGTACTACTCCATCTGTCTCATAATACAAGAGGGAATACGTGCGAATGCTTG
GCGTTGTATTCGAGCC---GATGCTCCAGGAGTTGGGAACCGATGGATGGTGAGTAGGTA---GATTCGTAGTGCTCTCG
CCTA--GCACTCCAAAGGACGCTTAACTATCTTATCCTACGAGTTAGGAAGCACACCCACAGGTATTATATCTACGA---
-------
>chr3A_43
----------------------------------------------GTAGCAAGCAGTACTCATAGAATCCTCTGCTTGC
GCTACGGGTCAAAAACTGAGAGACATGCACAGAGTGGTAGCGTGCATCGACGTATCCTGGCCGTCGAAATAGAATCTGAT
GCTCCAGCTGGATCGGTACCGAATTTAGCGAACCCGACACCTGCTACATACTACATGATCACGGGCGGCTCGCTGGATGA
GGCAGGCAGGCGGCAAAGTACATCATCATCATCATCATCGTCTCGCTCCGGCTCCGCACATGCACAAAACAA------AA
GATGCGCCATGTGTGTACATGGGGCGGGAGGCAAGGCCACGGACATGATTGGCCAGATCGGTTAGCGTGGGCGTCGCCAT
CGCAGCCTCCGCTAATTTAATC----------GTGCCCCCGGCCCCAACACGTCGCCCTCCTCCTC--------------
CTATACGCGACAGCGAGGGAGGAAGGAG-----GGAGAGCGATCCAATCCAGAACACGGAGCCGGAGGCGGGGACTGCGC
CAAACGCTAAAC-AAACAGGCGAAAACGCTGCGCGCACACACACAGCACATCCCATTCCATTCCATACAGTAGTAGGCGC
TGCACCCGGTGGATGGCAACATCGTGCGCATAAACAAAAGCGTCCGTCCACCAGCGCACATAT-------------ACAA
ACGCGCACGTAGC---GGGGCGGATCATTGAAAGCTGCACCCATCCATCCATCC------GCCACCATTTCCACCATCCC
C----CCATCACTCGACCCGGCCCTCCCTGTACTACTAGTACACCCCTCGCCCCCTCCTCCGT---------CCTGATAG
TGGTACACTCTGTTGCGGTGGCCAGTGATCATCGCCAAGGCCCAGCCCACAGATATATACGCTTTCGGAAAGTGGGGGTT
GGTTTCGCTTTGAGCTTTTTATCCGGGGCAGCCAGGCAGCCAGGCAGCCGCCGGGCCGGGACTTCCGCTCTGTTACGCGT
CCAGAGGCTAGATAGCTCCGTCCGTCCGTGTCCGATTCCGCCGGGGCCGGGCGTGGATACCTAGGCTAGGCGAGGCGAGG
CGCCGCCGATGTCGGACTGCAGCACCGGCACGGACTCGCCGCGGGCCGACTCCGTCGACGAGCAGCCGCCCGCCGACGCC
GAGTCGCCCGGCGTTGGCCAGAGCAAGCGCGACCACCCCTCGCCGTCGTCCCCGCTGCCGCCGCCCAAGCGCAGGTACGT
ACATACACACGCATCTCCATCTCCATCCATCCATGGAACCGGTCGAATCTCGAATCTTGATTAGGCGGCGGAGGATT---
-------GAACGAGTATGTTCGTTTGGCGCTTGGTTGCAGCCGGAGATCCGTGGAGAAGAGGGTGGTGTCGGTGCCGATT
GCCGAGTGCGGCGAGCGGGCCAAGACCAACGGCGAGGGCCCGCCGCCGCCGGACTCGTGGGCGTGGCGCAAGTACGGCCA
GAAGCCCATCAAGGGATCCCCCTACCCGCGGTAACTACGCCTACCCACCATAGATACATGCAGCTTTGCAGGACAGGCTG
GTAATTCCTTTGCGGCAATTAAAATCATCAGTTACTTA----------------CTAATTTCTGTGAATTGCTGTCGCGT
GTTGTGTT-----CAGGGGGTACTACCGCTGCAGCAGCTCCAAGGGGTGCCCGGCGAGGAAGCAGGTGGAGCGCAGCCGC
GCCGACCCCACCGTGCTACTCGTCACCTACTCCTACGATCACAACCACCCGTGGCCGGCGCCCAAGACCGGCTGCCACCC
CACCAAGTCCTCCCCGCGCCTGGTGGAGCCCAAGCCCGAGCCCGGCACGCCGGTGGAGTGCCAGCCCGAGCACGGACCCG
AGGCGCCGGAGCACGGGCCTGAGGCGCCGGAGCAAGAG---------------------CAGGAGGAGGAGCATGAGCAG
AAGCCTGTCATCGGCCTGGCCGACCCCGCGGCGATCACGACGGTGACCGCGGCGACC---GAGGAGGAGGAGAGCTTCGA
CTTCGGGTGGTTCGACCAGTACCCGACGTGGCCCCGGACGGCGCTGTACGTGCCGGCGTTCGACGTGGCGCCGCCGCCGG
AGGACTGGGAACGCGAGCTGCAGGGGGAGGACGCGCTCTTCGCGGGGCTGGGCGAGCTCCCGGAGTGCGCCATCGTGTTC
GGCCGCCGGCGCGACCTGGCCCTGCCGGCCACCGCGCCCTGCTCCTGACTATTCACCGCG----CCTCCCGTTCCGATCC
CGTTTTCCCCCTTTCTTTTCCTTTCCTCCGGCCGTAGT-TTTACCCGGAGTAATTTGGAGGTGTAGTACATAGCCTGGAT
CAGATCAAAGGGATTTCGCTGTTCAATGGTGGCTTTCCGCTTATTTTACTCCCTCGGTTCCATCGCGCTCGCCATATCCA
AGGCCGTGCCCGTGCCTGTGCTGTGCTGCCCGCGCCGCTCCGGGAGCAGTTCCGGTCACGATGCACGTCCGATTCCACCG
AAAAGCAGCGAAAGGTTGGCATTTTCAGGCGTCCTCCTCGTCACCCGTGACGCGCAGCGCAGATAAGACGCACACACACA
CACTCCTCGCCCGGCGCAGAGGCTGGCGGCAAGTG---------------------------------------------
---------------------------------------------------------GCCACAATCCTTGCCGGCCACGG
CCGGCCTGGTAATTTGGTGCCTGGCGCGGGCCGGCGGAGCAAATGCCACGGCGCGG-ACGGACGGCTACACCAATAATCC
CCGGGAATTTT-GCGTGCCGGGCCGGGTCGCGTACGCCGTCTTCGAGTGCGATGTCTTGAATTCGGTCTCTATCCCTGCA
CCGTATTCGTGGCCTGTCGCCGTCGGCCCCCCTGCCCGGTCGCGATATTTTCGGGACAGGAATCTACCTACAACCAGACA
AACAAATTATTGGGTTGGGTTGGGTTGGGCCTGGCATGAAAAGATCCAGCCAACTCGACCGATCCATCTATCCAGCCATC
CAGGCAGGCAGGAAAAGCGAAATGAATGAGTACTACTACGTACGTACTCGAC-----------------GCGAATCCTTG
GCGTTGCATTCGAGCCGATGATGCTCCAGGAGTTGGGAACCGATGGATGGTGAGTAGGTACTAGATTCGTGGTGCTCTCG
CCTATAGCACTCCAATGGACGGTTAACTATCTTATCCTACGGGTTAGGAAGCACACTCACAGGTATTATATCTATGCTGA
ACTGCTC
>SNPs
S------S------S-----S--------S------S-------------------------------------------
---------------------------S----------S---S-------------------------S-----------
--------------------------------------------------------------------------------
--------SSSSS--SSS-S------------------------------------------------------------
----S-------------------------------S----------------------------------S--------
------------SS-S-SS-SSSSSSSSSSSS-------------------------------SSSS--SS---------
----------------------------SSSSS---------------------------S-----------------S-
------------S------------------------------SS-------------------------------SSSS
S---------------------------------------------------------S-SSSSSSSSSSSSSSSS----
----------------------------------------------S---SSSSS-SSS-------S-------------
-SSSS----------------S--------------------S-S----SS------S---S---------------S--
---------SS----S--S----S----------S-------------------------------------SS------
--------------------------S------------------------------------------------SS-SS
S-SS---------------------S------------------------------------------------------
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--------------------------------------------------S-----------------------------
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S-------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-----------------------------------S----------------------------------S---------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S---------S--
------------S-------------------------------------------------------------------
----------------S-----------------S-S-SSSSSSSSSSSSSSSSSSSSS-----S---------------
-----------------------------------------------------------S--------------------
--------------------------------S------------S----------------------------------
-------------------------------------S-----S-----S------------------------------
--------------------------------------------------------------------------------
-------------------S------------S-----------------------------------------S-----
---------------------------S----------------------SS---------------S------------
--------------------------------------------------------------S---S----------S--
---------------------------------S-S------------------S-----------------S-S-----
S-----------------------S--------------------------------------------S----------
-S------------------------------------------------------S-----------------------
--------------------S---------------------------------------------------S-------
S--------------------------------------S--------------------------S-------S---S-
------------------------S---S----------------------------S----------------------
----------------------------------------------------S--S-SS-SSS-----------------
---------------------------------------S----------------S------S----------------
--------------------S--------------------------------S------------------------S-
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>forward_258
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------------------------------------------------------------------------------CA
GGCAGGCACATCTCATCA--------------------------------------------------------------
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>reverse_2060
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-----------------------------------------------------------AGAGGAGGAGGAGAGCTTCG-
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>forward_1853
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-------------------------------------------------------------------------GCCAACC
CAACAAGTCCTCT-------------------------------------------------------------------
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>reverse_2955
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--------------------------------------------------------------------------TCTGAA
CCGTATTCGTGCCC------------------------------------------------------------------
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