>input_sequence_60848
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--------------------------------------------ATGGTCCCCACCATACCGTATGAATTGCACCCTGGG
ATCCTGGAGCACATCCCGCCAAGTCCGCAGACAATCGCCCACGCCTCCGTCGTTTGCAAAGCATGGCGCCGCATAGTGTA
TGCTCCTGGTTTCCTCCACCGGTGCCATGCACGCCATGTTGTACCAGTGGTCATGGGATTCTTCCACAACTCCAATACAC
TTCCCCGCCCGTTCGTACAGATCAACGACACCACTAGCTTATCCTTTCGTTTTCCTAATGATGGCAATTACTCATGGACG
TTTATGGATTGCCGTCACGGCCGTGTCCTCCTCCGTAACGGCCGTTGGTTCCTCGTGTGGCACCCAATGACTGGCCACTA
CCGCCTAATCAATGCCGAATCTAGTCGCTGGGAGGAGTACACCGAGAAGAATAGCAATGCTGCGTTGCTCTGTGTGGTTG
ATGACAACGATGGCCACCAAGTTTGCTGCCAACAACCCACAAGTCCATTTCGTGTGGCCCTTGTCCACAATGATTCTCAG
GGTCGTGTTCATGCCGACGTCTACTCCTCACTTACTGGCCAGTGGAGCCTGCCGCCCACGCCGGTGGATCTCCCGTTGTT
GTGTGACATCCGTGTGGAGCCATGTGTCATCATCTTTAACACTATGTACCAACCTCTCAATGACTACCATGTGTTGGCCT
ACGACATGGACAAGAGCACTCTCACTGTGTTCGAGCGGCCGAATGGAGGAAATGCCCGTCTAATGAAGGTTGATGGTGGT
GGACGACTCGGCCTTGCCTCCGTGGAGGACCTCACATTGCGTATGTGGGCTCGGGGAGCCTACAATGGTTGGGTACTACG
CACCTCGGTTGATCTGGGGGAGGCCATTGCATGCTTGTCAAAGGTCACATTACCTAAGGTAGACTCTAGCTTCCTGATGA
TGCCGCGGGTGAAGATCATCGGGAGCACCGAGGAGGGAGACGCGCTATTTTTGTGGACCATGGTCGGTATATTCATTCTA
TGTCCTAAAACCATGGAGTTCAAGAAGGTGCATGAGGCCGTTAAGGACATGGAGATTGTGTACCCATATACTGCCTTCCC
CACTGCTGCCAGCTGGTAA-------------------------------------------------------------
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>chr5A_1_TraesCS5A01G426900
GTAAATGAAGAAAATGTGGTGGGTGGTACAAAACCTACCGAATCTGAAGGAAGACAAATACTGTACATAGTTGCATTCCT
TGATTATGAGACGATGTCTACTCCCTAAGCTGCATCAAATTATTTGTGAACTTATTTGCTTAACTCAAATGATCAATTTT
TTTTTGTTCTGTAATGGTGCTGCAAAAGCATTATCTTGAAGGAATTTAGATGGTTAATTCCCCAAACTTGCATCTCCAAT
ATCAAAGTGGATAGAA-AATATCTATATTGAATATTATTGTGATTTTTATATTATGGGCCTTGAGTTTTAGTTTCCTCCT
AGCCCCTAAAATCTCAGGACCGGCCCAGTGTTTAGCACATGTTTTTTGGC-ACAGTCTGCCTCAATGGTACCTTCCAAAA
GAAAAGTTGCCTAAAATATTGTGTGAACGCACACACAAATTTTG-TAGCCATTGGATCCACATCCAACCATCACAATCCG
CTCAGGGAGCCAATAAATATACCACTTGAACCTAACCCTAAACCATCCCCC-CCCATCTCGCCGCCGCCGCATTCCTCAC
ATCGTTCTCTCCATCCACCCTCATCTATCTTTTTTGCTGCCCATCTCCCTCTTCCAAGTGATCTATGTGTTGACACTCTT
CATCCACTTTCACGGTGGTCGTCGATGTCGCCTCCAGACAATGAGTGGTGATGTCTAGGGCGCATCCCACAAAAAGATAA
TAGCGGGAGGAGGGGAGGAGGAGGCGCGTAATTTTTCATCAAGGGGAATTTGTCGCCGCCGTAAAATCACTTCGTCGGCG
GTCTCTCTCTTGTTGGAGGCAACACCTTTGGCACATCCTCTTAGTGATGGCGCTAGCGAGTTGACTCATTTGGTTGACGA
AGAAGAAAAGAAGGTGGGATCTCCATGCACTAGAAAAATCGACTAGAAGTTAAAAGGTAAATTTTGGCTACTTACAATGC
ATTGTAGATCTAAATCTCAAAGCTAATCCAATAATTTTGCAGTTATGGTCCCCACCATACCGTATGAATTGCACCCTGGG
ATCCTGGAGCACATCCCGCCAAGTCCGCAGACAATCGCCCACGCCTCCGTCGTTTGCAAAGCATGGCGCCGCATAGTGTA
TGCTCCTGGTTTCCTCCACCGGTGCCATGCACGCCATGTTGTACCAGTGGTCATGGGATTCTTCCACAACTCCAATACAC
TTCCCCGCCCGTTCGTACAGATCAACGACACCACTAGCTTATCCTTTCGTTTTCCTAATGATGGCAATTACTCATGGACG
TTTATGGATTGCCGTCACGGCCGTGTCCTCCTCCGTAACGGCCGTTGGTTCCTCGTGTGGCACCCAATGACTGGCCACTA
CCGCCTAATCAATGCCGAATCTAGTCGCTGGGAGGAGTACACCGAGAAGAATAGCAATGCTGCGTTGCTCTGTGTGGTTG
ATGACAACGATGGCCACCAAGTTTGCTGCCAACAACCCACAAGTCCATTTCGTGTGGCCCTTGTCCACAATGATTCTCAG
GGTCGTGTTCATGCCGACGTCTACTCCTCACTTACTGGCCAGTGGAGCCTGCCGCCCACGCCGGTGGATCTCCCGTTGTT
GTGTGACATCCGTGTGGAGCCATGTGTCATCATCTTTAACACTATGTACCAACCTCTCAATGACTACCATGTGTTGGCCT
ACGACATGGACAAGAGCACTCTCACTGTGTTCGAGCGGCCGAATGGAGGAAATGCCCGTCTAATGAAGGTTGATGGTGGT
GGACGACTCGGCCTTGCCTCCGTGGAGGACCTCACATTGCGTATGTGGGCTCGGGGAGCCTACAATGGTTGGGTACTACG
CACCTCGGTTGATCTGGGGGAGGCCATTGCATGCTTGTCAAAGGTCACATTACCTAAGGTAGACTCTAGCTTCCTGATGA
TGCCGCGGGTGAAGATCATCGGGAGCACCGAGGAGGGAGACGCGCTATTTTTGTGGACCATGGTCGGTATATTCATTCTA
TGTCCTAAAACCATGGAGTTCAAGAAGGTGCATGAGGCCGTTAAGGACATGGAGATTGTGTACCCATATACTGCCTTCCC
CACTGCTGCCAGCTGGTAAT--TATATGCACCTCAATGCATGCCTAAGCACTTATGATATTCCCTCTGTTGCCCGAGATC
GGCATATAATGTGTTAGTTGCAAGCATTTTGGCCGGTACTTGCAGTTTTTTATTGCGCAACTAGTACTCAAGTCCGAGTA
CGAGTAGCAAGTTTACTATCAGTGCATCAAGCTAGTCTTTTATTTTCTATCCGTGAGATGTTTTTCCTTGTTTATTTTAA
TGGAAAGGGACAAAACTTGATTGAGAAAAGGTTGGATGAGACCCTTCCCATTTTATTATTTGATCCCATGTACTA-TATG
TGTGAGCAACATTACATCATGGATACTTTTCAAAGACAGGTCATCCATTTTTTATGAACTAAACA-GAGCAACATTTGTC
TATGGTGAAACTGGAAACAACATTTACGACCGTGTTGTTGTGCATAAGACTTCCTTCTTAGCATAGCTTACGGTATATAA
AACTCTCTGATTTTGTAGTCATGCTAGTTGCTAGAACATCAATATCCTAGCACCAGCTTCTCATTGTAGCCTTATTTGAA
TGGAGCCATGCAATGCA--------ATTGAAGTTGCCGAAAACTGTGTGAAAGTTGACAATTTTTT-TAGCCGTTGAATC
TACATTCAAGCATCGTAATATTCCTTTACTGC--CTGTAGGCGCACGGTAGCACGCAACCACACATGCAGTAGCG--AAC
GAGAAGTCCCATGCGACGCTCTCCGCATCCAATAGAGACCCCGAAGCACAACGAGGCATGAATAGGTCGACTCATTTACT
ATGCCTGTAGCGCATGGTACACTGGAGCAAACCGATTCGTTGTAGCGGCCCCGCTGTAGCAAACAGGACACTGTAGCAAC
CGGTTTTTTATTTTTAT--TTTGAACATCTTTGAAAAACGAACAAGTTTTGAACTTTCTGAACATTTTTTTGAAAGTATG
AATGTTTTTGAGACTGCGATTTGTTTTTGAAATTCCAAACATTTTA-AAAACATGAACATTTTCTGAAAA-TTGCTGAAC
>chr5B_1
GTAAATGAAGAAAATGTGGTGGATGGTACAAAACCTACCGAATCTGAAGGAAGGCGAATACTGTACATAGTTGCATTCCT
TGATTATGAGACGATGTCTACTCCCTAAGCTGCGTCAAATTATTTGTGAACTTATTTGCTTAACTCAAATGATCAA-TTT
TTTTTGTTCTGTAATGGTGCCACAAAAGCATTATCTTGAAGGAATTTAGACGGTTCATTCCCCAAACTTGCACCTCCAAT
ATCAAAGTGGATAGAAAAATATGTATATTGAATATTATTGTGATTTTTATATTATGGGCCTTGAATTTTAGTTTCGCCCT
AGCCTCTGAAATCTCAGGACCGGCCCGGTGTTTAGCACATGTTTTTTTGGTACAGTCTGCCTCAATGGTACCTTCCAAAA
-AAAAGTTGCCTAAAATATTGTGTGAACGCACACAC-AATTTTG-TAGCCATTGGATCCACATCCAACCATCACAATCTG
CTCAGGTATCCAATAAATACACCACTTGAACCCAACCCTAAACCATCTCCCTTCCATCCCGCCGCCGCCGCATTCCTCAC
ATCGTCCTCTTCATCCACCCTCATCTATCTTTTTTGCTGCCCATCTCCCTCTTCCAAGTGATCTATGTGTTGGCACTCTT
CCTCCACTTTCACGGCGGTCGTTGATGTCGCCTCCAGACAATGAGTGGTGATGCCTATGGTGCATCCCACAAAAAGATAA
TTGCGGGAGGAGGGGAGGAGGAGGCGCGGAATTTTTCATCAAGGGGAATTTGCCGCCACCGTAAAATCACTTTGTTGGCG
GTCTCTCTCTTGTTGGAGGCAACACCTTTGGCACATCCTCTTAGCGATGGCGCTAATGAGTTGATTCTTTTGGTTGACGA
AGAAAAAAA--AGGCGGGATCT-CATGCACTAGCAAAATCGACTAGAAGTTAAAAGGTAAATTTTGGCTACTTACAATGC
ATTGTAGATCTAAATCTCAAACCTAATCCAATAG---TGCAGTTATGGTCCCCACCATACCATATGAATTGCACCCTGGG
ATCCTGGAGAAAATCCCGCCAAGTCTGCAGACAATTGCCCACGCCTCCGTCGTTTGCAAAGCATGGCGCCTCATAGTGTT
TGCTCCTGGTTTCCTCCACCGGTGCCATGCACGCCATGTTGCACCAGTGGTCATGGGTTTCTTCCACAACTCCAAAACAC
TTCCCCGCCCATTCGTACAGATCAACGACACCACTAGCTTATCCTTCTGTTTTCCTAATTATGGCAATTACTCATGGACG
TTCATGGATTGTTGTCACGGCCGTGTCCTCCTCCGTAACGGCCGTCGGTTCCTCCTGTGGCACCCAATGACCGGACACTA
CCGCCTAATCAATGCCGAATATAGTCGTTGGGAGGAGTACACCGAGAAGAACAGCAATGCCGCGTTGCTTTGTGTGGTTG
ATGACAACGATGGCAAACAAGTTTGCTGCCAACAACCAACAAGTCCATTTCGTGTTGCCCTTGTCCACAATGATTCTCGG
GGTCGTGTTCATGCGGGCGTCTACTCCTCACTTACTGGTCAGTGGAGCCTGCAGCCTACGTCGGTGGATCTCCCGCTGTT
GTGTGACATCCGTGTGGAGCCATGTGTCATTATCTTTAACACTATGTACCAACCTCTCAATGACTACCATGTGTTGGCCT
ATGACATGGACAAGAGTACTCTCACTGTGTTCGAGCGGCCGAATGGAGGAAATGCCCGTCTAATGAAGACTGATGGTGGT
GGACGACTCGGCCTTGCCACCGTGGAGGACCTCACATTGTGTATGTGGGCTCGGGGAGCCTACAGTGGCTGGGTACTACG
CACCTCGGTTGATCTGGGAGAGGCCATTGCATGCTTGTCAAAGGTCACATTGCCTAAGGTAGACTCTAGCTTCCTGGTGA
TGCCGCAAGTGAAGATCATTGGGAGCGCCGAGGAGGGAGACGCACTATTTTTGTGGACCATGGTCGGTATATTCGTTCTA
TGTCCTAAAACTATGGAGTTCAAGAAGGTGCATGAGGCTGTTAAGGGCATGGAGATTGTGTACCCATATACTGCCTTCCC
CACTCCTGCCAGCTGGTAATTATATATGCACCTCAATGCATGCCTAAGCACTTATGATATTCCCTATGTTGCTCGAGACC
AGCATGTAATGTGTT--TTGCAAGCATTTTGGCCAGTACTTGCAGGTTTTTATTGCGTAGCTGGTACTCAAGTCTGAGTA
TGAGTAGCAAGTTTACTATCAGTGCACCGAGCTAGTCTTTTATTTTCTATCTGTGAGATGTTTTTCCTTGTTTATTTTAA
TGAAAAGGGACAAAACTTGATTGAGAAAAGGTTGGATGAGACCCTTCCCATTTTATTATTTGATCCCATGTACTA-TATG
TCTGAGCAACATTACATCATGGATATTTTTCAAAGACAGGTCATCCATTTTTTATGAACTAAATAGGAGCAACATTTTTT
TATGGTGAAACTGGAAACAACATTTACAACCGTGTTGCTGTGCATAAGACTTCCTTCTTAGCATAGCTTACGGTATATAA
AACCCTCTAATTTTGTAATCATGCTAGTTGCTAGAACATCAATATCCTAGCACAAGCTTCTCATTATAGCCTTATTTGTA
TGGAGCCGTGCAATGCA--------ATTGAAGTTGCCAAAAACTGTGTGAAAGTTCACAAATTTTTGTAGCCGTTGAATC
TACATTCAAACATCGTAATATCCCTTAGCTGCGCTTCTAGGCGCACGGTAGCACGCAGCCACACATGCAAGTAGCCAAAA
GAGAAGTCCTATGTGACGCTCTCTGCGTCCAACAGAGACCCCGAAGCACAACGAGCCACGAATAGGTCGAATCATTCACT
ACGCCTGTAGTGCATGGTACACTGGAGCAGTACGATTCGTTGTAGCGGCCCCGCTGTAGCAAACAGGACAGTGTAGCAAC
CGATTTTTTTTATTCTTAATTTGAATATATTTGAAAAACGAACAAGTTTTGAAATTTCTCAAT-TTTTTTTGAAAGTATG
AATGTTTTCTAGACTGCGATTTGTTTTTGAAATTGCAAACATTTTA-AAAAAATGAGCATTTTCTGAAAAATTGCTGAAC
>chr5D_1
GTAAATGAAGAAAATGTGGTGGGTGGTACAAAACCTGCCGAATCTGAAGGAAGACGAATACTGTA---AGTTGCATTCCT
TGATTATGAGACGATGTCTACTCCCTAAGCTGCATCAAATTATTTGTGAACTTATTTACTTAACTCAAATGATCAATT--
--------------------------------------------------------------------------------
-------------------------------------------TTTTTATATTATGGGCCTTGAATTTTAGTTTCGCCTT
AGCCCCCAAAATCTCAGGACCGGCCTGGTGTTTAGCACATGTTTTTTGGTAA------GCCTCAATGGTACCTTCTAAAA
C-AAAGTTGCCTAAAATATTGTGTGAGCGCATGCAC-AGTTTTTATAGCCATTGAATCCACATCCAACCATCACAATCTG
CTCAGGTATCCAATAAATATACCACTTGAACCTAACCCTAAACCATCTCCCTCCCATCTCGCCGCCGCCGCATTCCTCAC
ATCGTCCTCTGCACCGACCCTCATCTATATTTTTTGCTGCCCATCTCCCTCTTCTAAGTTATCTATGTGTTGGCACTCTT
CCTCCACTTTCACGGCGGTCGTCGATGTCGCCTCCAGACAATGAGTGGTAATGTCTACGGTGCATCCCACAAAAAGATTA
TAGCGAGAGGAGGGGAGGAGGAGGCGCGGAATTTTTCAGCAAGGGGAATTTGCCGCCACCGTAAAATCACTTCGTCGGCG
GTCTCTCTCTTGTTGGAGGCAACACCTTTGGCACATCCTCTTAGTGATGGCGCTAGCGAGTTGACTCATTTGGTTAACGA
AGAAGAAGA-AAGGCGGGATCTCCATGCACTAGCAAAATCGACTAGAAGTTAAAAGGTAAATTTTGGCTACTTACAATCC
ATTGTAGATCTAAATCTCAAAATTAATCCAATAGTTTTGCAGTTATGATCCCCACCATACCGTATGAATTGCACCCTGGG
ATCCTGGAGCACATCCCACCAAGTCCGCAGACAATCGCCCACACCTCCGTCGTTTGCAAAGCATGGCGCCGCATAGTGTC
TGCTCTTGGTTTCCTCCACCGGTGCCATGCACGCCATGTTGCACCAGTGGTCATGGGCTTCTTCCACAACTCCAGCACAC
TTCCCCGCCCATTCATACAGACCAACGACACCACTAGCTTATCCTTCCGTTTTCCTAATGATGGAAATTACTCGTGGACG
TTCATGGACTGCCGTCACGGCCGTGTCCTCCTCCGTAACGGCCGTCGATTCCTCGTGTGGCACCCAATGACCGGCCACTA
CCGCCTAATCAATGCCGAATATAGTCATTGGGAGGAGTACACCGAGAACAACAACAATGTTGCATTGCTCTGTGTGGTTG
ATGACAACGATGGCCACCAAGTTTGCTGCCAACAACCCACAAGTCCATTTCGTT-----CTTGTCCACAATGATTCTCGG
GGTCATGTTCATGCCGGCGTCTACTCCTCACTTACTGGTCAGTGGAGCCTGCCGCCCACGTCGGTGGATCTCCCGCTGTT
GTGTGACATCCGTGTGGAGCCATGTGTCATTATCTTTAACACTATGTACCAACCTGTCAATGACTACCATGTGTTGGCCT
ATGACATGGACAAGAGTACTCTCACTGTGTTCGAGCGGCCGAATGGAGGAAATGCCCGTCTAATGAAGGTTGATGGTGGT
GGACGACTCGGCCTTGCTGCCGTGGAGGACCTCACATTGCGTATGTGGGCTCGGGGAGCCTATAGTGGTTGGGTACTACG
CACCTCGGTTGATCTGGGAGAGGCCATTGCATGCTTGTCAAAGGTCACATTGCCTAAGGTAGACTCTAGCTTCCTGGTGA
TGCCACAGGTGAAGATCATCGGGAGCGCTGAGGAAGGAGACGCACTATTTTTGTGGACCATGGTCGGTATATTCATTCTA
TGTCCTAAAACTATGGAGTTCAAGAAGGTGCATGAGGCCGTTAAGGGCATGGAGATTGTGTACCCATATACTGCCTTCCC
CACTCCTGCGAGCTGGTAATTAT--ATGCACCTCAATGCATGCCTAAGCACTTATGATATTCCCTCCGTTGCC-------
-GCATGTAATGTGTTAGTTGCAAGCATTTTGGCTAGTACTTGCAGTTTTTTATTGCGTAGCTGGTACTCAAGTCCGAGTA
TGAGTAGCAAGTTTACTATCAGTGCATCAAGCTGGTCTTTTATTTTCTATCTGTGAGATGTTTTTCCTTGTTTATTTTAA
TGAAAATGGACAAAACTTGATTGAGCAAAGGTTGGATGAGACCCTTCCCATTTTATTTTTTGATGCCATGTACTATTATG
TCTGAGCAACATTACATCATGGATATTTTTCAAAGACAGGTCATCCATTTTTGATGAACTAAATAGGAGCAACATTTTTT
TATTGTGAAACTGGAAACAACATTTACAACTGTGTTGTTGTGCATAAGACTTCCTTCTTAGCATAGGTTACGGTACATAA
AACTCTCTGATTTTGTAGTCATGCTAGTTGCTAGAACATCAATATCCTAGCACAAGTTTCTCATTATAGCCTTATTTGTA
TGGAGCCATGCAATGCAAATATGCAATTGAAGTTGCCAAAAACTGAGTGAAAGTTCACAATGTTTTTAAGCTATTGAATC
TACATTCAAACATCGTAATATCCCTTTACTGCGCCTGTAGGTGCACGGTAGCACGCAACCACACATGCAGTAGCC--AAA
GAGAAGTCCTATGTGACGCTCTATGCATCCAATGGAGACCCCGAAGCACAACGAGCAACGAATGGGTCGACTCATTTACT
ACGCTTGTAGTGCATGGTACACTGGAGCAGAACGATTCGTTGTAGCGGCCCCGCTGTAGCAAACAAGACACTGTAGCAAC
CGGTTTTTTATTTTTAT--TTTGAACATCTTTGAAAAACGAACAAGTTTTGAAATTTCTGA---TTTTTTTGTAAGTATG
AACATTTTTTAGACTGCGATTTGTTTTTGAAATTGCAAACATTTTTTAAAACATGAGCATTTTCTGAAAA-TTGCTGAAC
>SNPs
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------SS----------------------------S----S----------------S-------
----------------------S-----------------------------------------S----------SS---
--------------------------S----------------------S------------------------------
S-----------------------------------S-----------------------------------------S-
------S-S--------------------------------------S--------------------------------
-----S----S-------------------------------------------------------------S-------
-S-------------S-----------------------------------------S--S-------------------
----------------------------S-----------------------S----S----------------------
--------------------------------------------------------------------------------
---------S----S------------------S----------------------------------------------
---------------------S-----------S----------------------------------------------
-------------------------------------------------------------------------------S
-----------------------------------------S---------------S-----------------S----
----------S-----------------------------------S---------------------------------
--S------------------------------------------S-------------------------S--------
--------------------S------S-----------------------S----------------------------
-------------------------------------------------------S----------------------S-
----------------S---------------------S---------------------S--------------S----
------------------------------S-------------------------------------------------
-S--------------S---------------------------------------------------------------
------------------S---------------------------------------------S---------------
------------------S--------------------------------S------------------------S---
------S-------------------S----------------S------------------------------------
-----------S----------------------------------S---------------------------------
----S-------------------------------------------------------------------------S-
S----S----------------------------S----------------------S-S--S-----------------
S--------------------------------------------------S----------------------------
--S-----------------------------------------------------------------------------
-S-----------------------S-------------------------------------S-------------S-S
---------------------------S----------------------------------------------------
-----------------------------------------------------S-----------S------------S-
-------------------------------------S-----------------S------------------------
---------S-----------S----------------------------------------------------S----S
---------S---S---------S-------------------------------S--S---------------------
-S--------S------------------S-S------------------------------------------------
-----------------------------------------------------S--------SS----------------
---------S------------------------S---------------------S-----------------------
>forward_489
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---------------------------------------------------------------------ATCACAATCCG
CTCAGGGAG-----------------------------------------------------------------------
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>reverse_1388
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---------------------------CTGGGAGGAGTACACCGAGA---------------------------------
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>forward_701
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-----------------------------------------TGAGTGGTGATGTCTAGGGC-------------------
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>reverse_1927
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------GGGTGAAGATCATCGGGAGC------------------------------------------------------
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>forward_1631
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-----------GTGTGGAGCCATGTGTCATC-------------------------------------------------
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>reverse_2795
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--------------------------------------------------------------------------GAACGA
GAAGTCCCATGCGA------------------------------------------------------------------
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