>input_sequence_60835
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----------ATGTCGTCCAGCGCCTCCGAGATCGTCGCCGACACGACGCACGGGCGCCACCACCTGAAGATCGACGGCT
ACTCGATCACCAAGGCCACCCTGCCCACGGGGGAGTTCCTCAAGTCCCAGCCTTTCTCCGTCGGCGGCCGCCGCTGGGCC
ATCCAGTACTACCCCAACGGCGACCCGTCCTCGCACAAGGGCCACATCTCCCTCCACCTCGTCCTCGACGACGCCGTCGC
CGGAGAGGTGCGCGCGCAGGTCCAGTTCCGCTTTAAGGC---------CGAAAAGAAGCACGCGCTCTCCTTTCTCCAGA
GCTGGGGCCGTAAGCCCGCGCCGCTGAAGCTCGGCAGGGTGGAGGCCGGCGAAG---ATGGCGTCTGGGAGTGCCCGAAT
TTCGTCAAGAGGAAGACCCTGGAGGAATCGGACCATCTCAAGGACGATTCCTTCACCATCCGCTGCGACATCATCGTCGT
CAACGAGTTCCGCGCCGATGGGGGCCCGCCGCCGGCCCCCGCGCCAAGATCCGTCCCTGTGCCCCCGTCCGACCTTGGCC
AGCAGCTCGGCGACCTCCTCGCGGCCGACAAGGGCGCCGACGTCGTCTTCGAGGTCGGCGGCGAGACGTTCGCCGCGCAC
CGGTGGCTGCTCGCGGCCCGGTCGCCGGTCTTGAGCGCGGAGCTCTTCGGCTCGATGAGGGAGGGCGG---CGCCGCCGG
CGCGGTCCGCGTGGCCGACATGGAGGCGCAGGTCTTCAAGGCGCTGCTCCGCTTCATGTACACGGACTCGTGGCCGCTGG
AGACGGCGGAAGAAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGGCGGCCGACAAGTACCGCATGGAGAGGCTCAAG
CTGATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGGCGTTAGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGCGCATGCT------------------------------------------------------
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------------------------TCCATTTCCTCAGCTCTCCGAAGAACCTGACGGCAGCCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCCCTCTATTGTCAAGGAGCTGATTGCCAAGTGCTCGATCGATGCCCCAGCTCAGTAA--
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---------------------------------------------
>chr3A_1_TraesCS3A01G128700
AGAACACCTCGCGACAACGTATTTCGGGGCATGAGGTTGTCGAAGCCATTGGCATTCGCGATGGGAACCGAGGAAGAAAC
TTTGTTGGATGGAGAAGCATGTTAGGGTGTTACGATTTGGGTTGGGGGGTGGGGGGGAGGGTGGTGGTGGCAAAAGCGC-
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-------------------------------------------------------------AAGTGTTTTGTTTAATAAT
AGATTTAATTGTGCTACAAATGTACTGTAGTTACTTCACTCCATTCACAAACGGTATCGAAGGGGAAAACA--TTTTGGC
TCCAGGATGAATAGTGTAACTGTAAAAAAGATTGTTTTCTACAACACA---------------------CATGTTCATGT
CTCTTATCTGCCTGTGTAGTTTCGTGAACAAATAAGTGTGTAATCTAGGCAAAAGAAAAATTGTACTCTAGAAGGGCTCT
TTTAGGACCAATAGACTA-TTTTTCTTAGTACAATTTGCGCTTGTGTTTTTTTCATGAAAAATCAGACACGGAAAAGGAC
ATGAACATATACATGACAATATTTTCTCATTTTTTTACATTCATAATTTAACCTTTTCACCTGCGAACATATGCTCCTTG
GCGCCGTTTTGAATATTCGTAAAGGTCGGATTTATTTTTCTTAGTTGACTTTTTCTTAGCACGGTTCACAATACTAGTGT
TTTTTCCATCAAAATTCACAGACACGAACATATAGATTTCAATTTCTGTTGACATTGAGAAATTTACC-TTTTTTTCACC
CAGGAACATATGCTCCTTGGGGCCATTTT---------------------------------------------------
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---------------------------------------------GAATATCCGTAAAGGTCTGTTTTCTCTTTCATTTG
AATTTATTTGAGAAAAACGTAAGGCCCATTGAGTAACCTTTTTATCACTAAAGCCCATTTGCTCGAACGAAATTGCGAAG
GCCCGTG-TGTAGAAGAGTCCCGATCCAGAGCCTTTCCCAGAATAGAAAGGTTCGTCGTCCTCGCGTTCCCCTCCTC---
-----------------------CACTCCCCACTCCATCCCTGCCGAATCCCAGTAGCTCTGCGCGGCGCTACGCCAGAG
GCTCGCCGCAATGTCGTCCAGCGCCTCCGAGATCGTCGCCGACACGACGCACGGGCGCCACCACCTGAAGATCGACGGCT
ACTCGATCACCAAGGCCACCCTGCCCACGGGGGAGTTCCTCAAGTCCCAGCCTTTCTCCGTCGGCGGCCGCCGCTGGGCC
ATCCAGTACTACCCCAACGGCGACCCGTCCTCGCACAAGGGCCACATCTCCCTCCACCTCGTCCTCGACGACGCCGTCGC
CGGAGAGGTGCGCGCGCAGGTCCAGTTCCGCTTTAAGGC---------CGAAAAGAAGCACGCGCTCTCCTTTCTCCAGA
GCTGGGGCCGTAAGCCCGCGCCGCTGAAGCTCGGCAGGGTGGAGGCCGGCGAAG---ATGGCGTCTGGGAGTGCCCGAAT
TTCGTCAAGAGGAAGACCCTGGAGGAATCGGACCATCTCAAGGACGATTCCTTCACCATCCGCTGCGACATCATCGTCGT
CAACGAGTTCCGCGCCGATGGGGGCCCGCCGCCGGCCCCCGCGCCAAGATCCGTCCCTGTGCCCCCGTCCGACCTTGGCC
AGCAGCTCGGCGACCTCCTCGCGGCCGACAAGGGCGCCGACGTCGTCTTCGAGGTCGGCGGCGAGACGTTCGCCGCGCAC
CGGTGGCTGCTCGCGGCCCGGTCGCCGGTCTTGAGCGCGGAGCTCTTCGGCTCGATGAGGGAGGGCGG---CGCCGCCGG
CGCGGTCCGCGTGGCCGACATGGAGGCGCAGGTCTTCAAGGCGCTGCTCCGCTTCATGTACACGGACTCGTGGCCGCTGG
AGACGGCGGAAGAAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGGCGGCCGACAAGTACCGCATGGAGAGGCTCAAG
CTGATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGGCGTTAGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGCGCATGCT------------------------------------------------------
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------------------------TCCATTTCCTCAGCTCTCCGAAGAACCTGACGGCAGCCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCCCTCTATTGTCAAGGAGCTGATTGCCAAGTGCTCGATCGATGCCCCAGCTCAGTAATG
GTTGATTCTTGATTGATCCTAGGATGC-----------------------------------------------------
-------------------------TACATACCGTTGGGAACCATCAAGTTACTAGCTACATATGCATGCTCTCTCTTGT
TTCAGCAATGGTACTCTGGC-ATTTAATTTTCTTGTCATGTTCAAAGTGACCACAT-CCTACTATCATTGCATTATGTGC
AACCTTACCAATCAA----TTAAT----CAGTAATGAAGGGCATTGTGAGTTATCAGATGA-------------------
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------------------CATTGCAGTTGAATCTCCATTTGTTCTGCATTTTTGTGTGTGGAGAAACGTCTGTTCTGCAA
ATTATATGGCTAACCCGTTGTGTTCTCCTCTAATAAAGTAAAAGTGTTTCGGATATACAGTACGTATAACGCATGAATTT
TTCCTTAATGGTTTTACTAAT-CCAAGTCGTCTGCGATTTTCTTTTGT--AAGT-CGATTTCTGAATAGGGTGACTT-TA
ATTTGCTGATGCACATATAACATTTTCATCCGGTTGCACTTTTAATGGAAGAACATTACTTGGGAGATCTTATTACCGTC
GATCCTTGAGTTCAAGGTTATGTAT----------------------------------GATCTCCAGTTTGCACTTATT
GTATTCCTCAATGGAGGAATTAATGATCTCGCAAAT-CCATTGTCCGTCGGTGCAATTTTTGGGCTGGTCTGATGGCAGT
AAAGAAACATCTTTTCCGTTTCGGATCCTTAGCGATAAAGGACGGCTCGGAGATACGCTTCTGGGAGAACAAGTGGCTAG
GAAATACCACTCTCCGAGAACAGTACCCAGCCTTGTACCGCATTGTATGCGATAAGAACGATACTCTTGCGCATGTGATG
ACCACTTCTCCGCCAGATATATCATTTCGGAGGGATTTGGTTGGGACCCGTCTTGTATCATGACAACATCTTCTATCCCG
TTTGGATTCGATTAACTTGACACAAGGCCGGGATGTCTTTCGCTGGAATCTTACTACATTTGAAGGTTTTCATTAGACTT
TATTACAAAGTTAGAAACCAGTAAATTAGGAT--GTCATTTTTCT
>chr3B_1
AGAACACCTTGCGACATAGTATTTCAGGCAACAAGGGTGCCGAAGTCATTGACATTCGCGATGGGAACCGAGGAAGAAAC
TTCGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGAAGTGTTTTGTTTAATAGT
AGATTGAATTGTGCTACAAAT-----GTAGTTACTTTACTCCATTGACAAACGGTACCCAACGGGGGAAACATTTGTGCC
TCCTAGGTGAACAGTGAAATTGTAAAAAAAGAAAGTTTAGCGCTTTCCAAAGAAAAAACAATTGTTATGCATGTTCATGT
TTTTTATCTGCGTGCAAAGTTTCGTGAACAAATAAGTTTGTAATCCGGGCAAAAG-AAAACTGTACTCTAGAAGGGCTTT
TTTAGGAGTAGTAACTTTTTTTTTCTTAGTACAGTTTACGCTCATGTTTTTTTCATGAAAATTCAGACATGGAAAGGGAC
ATGAACATATACATGTCAATATCTCAGTTTTGTTTATT---------------TTTTCACCTGGGAACATATGCTCCTTG
GAGCCGTTTTGAATATTCATAAAGTTCAGATTTA---------------TTTTTCTTAGCACGGTTCACAATACTACTGT
TTTTTCCAGGAAAATTCACAGACACAAACATATACGTTTCAATTTTT-TTGACATTCATAATTTTACCTTTTTTTTCATC
CGGGAACATGTGCTCCTTGGAACCATTTTTGAATATGAAAATACTAACGCCCATACGTGTGGGCGTCTGGCAACTCGCCC
ACATGCATGGATCCTCGTTCAATCAATTCTGCACGAATCTTGGTGCGTTCTAGCAGTTTTTGTGTGCCACGTAGGACTGG
GTTGGTGTGTGGGCATTCGTCCGGTCGCCCACACGTTCTTTTTCACCACACGGGGGGCTGATGTATGGGCGTTTAGCAAT
TCGCCCACACCAGTTTTCACACACGTAGAGGGGCTGGTGTGTGGGCGTTTATCACTTCGCCCACACGCCCGTCTCCTCGC
TCACACCCAAGATCGTCAGTTGCCATGTGTTTCTGCATGGTACATGGCAACTGCCCTAGCTTTGCTTGTAAGCAGACGAC
AACTCTCTTTTATCCGAGTTGTCATGTGTTGCGTGGTACATGCCAACTGCCCTAGCGTGCACGTAAGCATATGACAACTC
TTTCTTTTACGTGGCAACTGCCCTAGCGTGCTTGTGAGCACATGACAACTCCCTTTTTTATTCGAACATGTTTTTTTGTC
ATGCCTTTTTTGTAGTGCTACATGGCAACTGTCTAGTGTTAGTAGGTGGCAACTCCTAAATTTTTGAAATCATGACAACT
GCAGCAGACCAGATCATACATGACAATTGTAGTTGTCCGACGTGGCAACTGTAGTTCAGCGACATGATAACTGCAGTTAA
ATGAACATGAAAGAGGGTCCAGACCATGACAACTGCGGGGACGCGTGCTGACTGCCACGCGGCGTGCGGGACCATAAGAT
AGGAGGCCTGACATATAGGCGTGTGAGCGTTATCTATTTTGCCCACAGATAGGCATGTGAGAGGGTCCGCGAGGAAAAAA
GAGACGTGTGTGCATTACTTGTTTTGCCCATACATAGACGTGTGGGCTGATCCTTTGAAACACCACACAAAATATGTGGG
CAGACCCTTTAACGACCACACGGGTGGGTGTTATCGGCGTCCTTCGAATATCCGTAGAGGTCAGTTTTCTCTTTCATCTG
AATTTTTTTGAGAAAAACGTAAGGCCCATTGAGTAACAATAGGTGCC--AAAGCCCATTTCCTCGAACGAAATTGCGAAG
GCCCGTG-TGTAGAAGAGTCCCGATCCATAACCTTTCCCAGAATAGAAAGGTTCGTCGTCCTCGCGTTCCCCTCCTC---
-----------------------CACTCCCCACTCCATCCCTGCCGAATCCCACTAGCTCTGCACGGCGATACGCAAGAA
GCTCGCC-----GTCGTCCAGCGCCTCCCAGATCGTGGCCGACACGACGCACGGGCACCACCACCTGAAGATCGACGGCT
ACTCGATCACCAAGGCCACCCTGCCCACGGGGGAGTTCATCAAGTCTCAGCCTTTCTCCGTCGGCGGCCGCCGCTGGGCC
ATCCAGTACTACCCCAACGGCGACCCGTCGTCGCACAAGGGCCACATCTCCCTCCACCTCGTCCTCGACGACGACGTCGC
CGGAGAAGTGCGCGCGCAAGTCCAGTTCCGCTTTAAGGC---------GGAAAAGAAGCACGCGCTCTCCTTTCTCAAGA
ACTGGGGCCGTAAGCCCGCGCCGCTGAAGTTCGGCAGGGTGGAGGCCGGCGAAG---CTGGTGTCTGGGAGTGTCCGAAT
TTCGTCAAGAGGAAGACCCTGGAGGAATCGGACCATCTCAAGGACGATTCGTTCACCATCCGCTGCGACATCATCGTCGT
CAACGAGTTCCGCGCCGATGGGGGCCCGCCGCGGGCCGCCGCGCCAAGATCCATCCCTGTGCCCCCGTCCGACCTCGGGA
AGCAGCTCGGCGACCTCCTCGCGGCCGACAAGGGCGCCGACGTCGTCTTCGAGGTCGGCGGCGAGATGTTCGCCGCGCAC
CGGTGGCTGCTCGCGGCCCGGTCGCCGGTCTTGAGCGCGGAGCTCTTCGGCTCGATGAGGGAGAGCGG---CGCCGCCGG
CGCGGTCCGCGTGGCCGACATGGAGGCGCAGGTCTTCAAGGCGCTGCTCCGCTTCATGTACACGGACTCATGGCCGCTGG
AGACGGTGGAAGAAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGGCGGCTGATAAGTACCGCATGGAAAGGCTCAAG
CTGATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGGCGTTAGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGTGCATGCT------------------------------------------------------
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------------------------TCCATTTCCTTGGCTCTCCGAAGAACCTGACGGCAGCCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCCCTCTCTTGTCAAGGAGTTGATTGCCAAGTGCTCGATCGATGCCTCAGTTCAGTGATA
GTTGATTCTTGATTGATCCTAGGATGCTTAT------TATATGCTTTGCAAGCTAC------------------------
--------------------------------------------------TACTAGCTACATATGCATGCTCTCTCTTGT
TTCAGCAATGGTACTCTGGC-ATTTAGTTTTCTTGTCATGTTCAAAAAGACTACAT-CCTACTATCATTGCACTATGTGC
AACCTTACC----AA----TTAAT----CAGTAATGAAGAGCATTGTGAGTTATCAGATGACATTGCAGCTCAATCTCCA
TTTGTTCTGTTCTTGCTAACTCATTGTGTTCTCCTCTAATAAATAGTTTCGGGGAAATAACACATGAATCTTTCCTTCAT
GGTTTTACTAATCCAAGTCGCCTGCTATTTTCTTTTGTCCAAGTCAATATTTGAAAAGGGTGACCTCAATTTGCTGATGC
ACATATAACATTTTCACCCGGTTGCACTTTTAATGGAAGAACATTATTTGGGAGATATTATTACCATCAATCCTTGAGTT
CGACATCATATAAGGTGGCATTGCAGTTGAATCTCCATTTGTTCTGCAAATATTTTTTTGGAGAAACGTCTGTTCTGCAA
ATTATATGGCTAACCCATTGTGTTCTCCTCTAATAAAGA------GTTTCGTATAA---------ATAACAAATGAATTT
TTTCTTAATGGTTTTACTAAT-GCAAGTTGCCTGCAATTTTCTTTTGTCTAAGT-CGATTTCTGAAAAGGGTGACTT-CA
ATTTGCTGATGCACATATTACATTTTCACCCGGTTGCACTTTTAATGGAAGAACATTAGTTGGGAGATCTTACTACCGTC
AATCCTTGAGTTCAACATTATGTAT----------------------------------GATCTCCAGTTTGCACTCATT
TTATTCCTTAATGGAGGAATTGATGATCTCGCAAAACCCATTGTCCGTTGGTGCAAAAGAATTTTCG-------------
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---------------------------------------------------------------------CTTCTATCCAG
CATTGTCGCCTTGTCGGTGGTGGTGGCATTGTTAA---------------------------------------AGACTT
TATCACAAAGTTAGAAACCAGTAAATTAGGATTTGTCATTTTTCT
>chr3D_771
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-------------------------------------------------------------------------TCATTTG
AATTATTTCGAGGAAAACGTAAGGCCCATTGAGTAACAGTAGGTGCC--AAAGCCCATTTCCTCGAACGAAATTGCGCAG
GCCCGTGTTGTAGAAGAGTCCCGATCCAGAACCTTTCCCAGAATAGAAAGGGTCGTCGTCCTCGCGTTCCCCTCCTCTGG
CCTCCTCCATCCTCTCCAGTCTCCACTCCCCGCTCCATCCCTGCCGAATCCCACTAGCTCTGCACGGCGATACGCAAGAG
GCTCGCCGCAATGTCGTCCAGCGCCTCCGAGATCGTGGCCGACACGACGCACGGGCGCCACCACCTGAAGATCGACGGCT
ACTCGATCACCAAGGCCACCCTGCCCACGGGGGAGTTCCTCAAGTCCCAGCCTTTCTCCGTCGGCGGCCGCCGCTGGGCC
ATCCAGTACTACCCCAACGGCGACCCGTCGTCGCACAAGGGCCACATCTCCCTCCACCTCGTCCTCGACGACGACGTCGC
CGGAGAGGTGCGCGCGCAGGTCCAGTTCCGCTTTAAGGC---------GGAAAAGAACCAGGCGCTCTCCTTTCTCAAGA
GCTGGGGCCGTAAGCCCGCGCCGCTGAAGCTCGGCAGGGTGGAGGCCGGCGAAG---CTGGTGTCTGGGAGTGCCCGAAT
TTCGTCAGGAGGAAGACCCTGGAGGAATCGGACCATCTCAAGGACGACTCGTTCACCATCCGCTGCGATATCATCGTCGT
CAACGAGTTCCGCGCCGATGGGGACCCGCCGCGGGCCGCCGCGCCAAGATCCATCCCTGTGCCCCCGTCCGACCTTGGCC
AGCAGCTCGGCGACCTCCTCGCGGCCGACAAGGGCGCCGACGTCGTCTTCGAGGTCGGCGGCGAGACGTTCGCCGCGCAC
CGTTGGCTGCTCGCGGCCCGGTCGCCGGTCTTGAGCGCGGAGCTCTTCGGCTCGATGAGGGAGAGCGG---CGGCGCCGG
CGCGGTGCGCGTGGCCGACATGGAGGCGCAGGTCTTCAAGGCGCTGCTCCGCTTCATGTACACGGACTCCTGGCCGCTGG
AGACGGCGGAAGAAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGGCGGCGGACAAGTATCGCATGGAGAGGCTCAAG
CTGATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGGCGTTAGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGTGCATGCT------------------------------------------------------
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------------------------TCCATTTCCTCAGCTCTCCGAAGAACCTGACGGCAGCCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCCCTCTCTTGTCAAGGAGTTGATTGCCACGTGCTCGATCGATGCCTCAGCTCAGTGATG
GTTGATTATTGATTGATCCTAGGATGCTTATTGATTATATATGCTTTGCAAGCTACTCCTACTAC---------------
-------------------------------------------------TTACTAGCTACATATGCATGCTCTCTCTTGT
TTCAGCAATGGTACTCTGGCGATTTAGTTTTCTTGTCATGTTCAAAAAGACTACATTCCTACTATCATTGCATTATGTGC
AACCTTACC----AA----TTAATTAATCAGTAATGAAGGGAATTGTGAGTTATCAGGTGA-------------------
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------------------CATTGCAGTTGAATCTCCATTTGTTCTGAAAATTCTTTTTTGGAGAAACGTCTATTCTGCAA
ATTATATGGTTAACCCATTGTGTTCTCCTCTAATAAAGA------GTTTCGGATAA---------ATAACGCATGGATTT
TTCCTTAATGGTTTTACTAAT-CCAAGTTGCCTGTGATATTTTTTTGTCTGAGT-TGATTTCTGAAAAGGGTGACTT-CA
ATTTGCTGATGCACACATTACATTTTCACCCGGTTGCACATTTAGTGGAAGAACATTACTTGGGAGATCTTATTACCGTC
AATCCTTGAGTTCAACATTGTGTAT----------------------------------GATTTCCAGTTTGCACTAATT
TTAGTTCTCAATGGAGGAATTGATAATCTCGCAAAT-CCATTATCTGTCGGTGCAAAAGAAATTTTG-------------
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---------------------------------------------------------------------CTTCGATCCAG
CATTGTCGCCTTGTCGGTGGTGGTGGCATTGTTAA---------------------------------------AGACTT
TATTACAAAGTTAGAAACCAGTAAATTTGGAT--GCCATTTTTCT
>chr3B_987
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----------------------------------------------------------------------------AGAG
GCTCGCCATGTCCGCTG---GCTCCTCCGCGATCGTGGCCGACACGGCGCGCGGGCACTACCACCTGAAGATCGACGGCT
ACTCGGTCACCAAGTTTGCCCTCCCTAAGGGAGAGTGCCTCAGGTCTCAACCATTCTCCGTGGGAGGCCGCCGCTGGGTC
ATCGAGTACTACCCCAACGGCGACCGACTCGTGGCCGCGAGGTACATTTCCCTCCACCTCGTCCTCGACGACGTCGTCGC
CGGAGAAGTGCGTGCGCAAGTCCAGTTTGGCTTTGAGGCAGACGAGGAGGAAAATAAGCCTGCGCTCTCCTTTCTCAAGA
GGCGGGGACGGAAGCCCGCGCCGTTGAAGCTCGGCAAGGTGGAGGCCCCCGTCCGCCCTGATGTCTGGGAATGTCCCAAG
TTCGTCAAGAGAAAGGCCCTGGAGAAATCCAACCATCTCAAGGACGAGTCCTTCACCATCAGGTGCGACATCATCGTCCT
CAACGAGTTCCGCGCCAAGAAGGGGCTGCCGCCGGGCCCCGCTCTCAGATCCATCCCCGTGCCCCCGTCCGACCCGGGCC
AGCAGCTCGGCGACCTCCTCGCGGCCAAGAAGGGCGCCGACGTGGTCTTCGAGGTCGGCGGCGAGACGTTCCCGGCGCAC
CGGTGCCTGCTCGCAGCCCGCTCACCAGTCTTGAGCGCGGAGCTCTTCGGCCCGATGAGGGAGAGCAC---CGGCGCCGG
CACGGTCCGTGTATCCGACATGGAGGCGGGTGTGTTCAGGGCGCTGCTCCGCTTCGTGTACACGGACTCGTGGCCGCCGG
AGACAGCGGAGGAAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGCCGGCCGACAAGTGCCGCATGGAGAGGCTCAAG
CTGATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGGCGTTAGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGTGCATGCT------------------------------------------------------
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------------------------TCCATTTCCTCAGCTCTCCGAAGAACCTGACGGCAACCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCCTTCTCTTGTCAAGGAGCTGATTGCCAAGTGCTCGGCCGACACCTAAGCTCAGTGATG
GTTGAT--------------------------------------------------------------------------
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>chr3D_1326
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------------------------TGAAGCCCGGCGAGGTGGAGGCCGCCCGCG---GCGGTGTCTGGAGATGTCCGCAG
TTCGTCAGTAAGGAGACCCTGGAGGCGTCGACGCATCTCAAGGACGATTCCTTCACCATCAGGTGCGACATCTCTGTCTT
CAACGCGTTCAGCGCCGAGGAGGGGCCGCCGCCGTCCCCCGCGCCAAGATCCATCCCCGTGCCCCCGTCCGACCTGTGTC
AGCAGCTCGGCGACCTCCTCGCGGCCAAGAAGGGCGCCGACGTGGTCTTCGAGGTCGGCGGCGAGACGTTCTCGGCGCAT
CGGTGGCTGCTCGCGGCATGGTCGCCGGTCTTCAGCGCCGAGCTCTTCGGCTCAATGAGGGAGAGT------GGCCCCGG
CGTGGTCCGCGTGGCCGACATGGATGCGCAGGTCTTCAAGGCACTGCTCCGCTTCGTGTACACAGACTCATGGCCGCCGG
AGACGGCGGAAGGAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGGCAGCCGACAAGTACAGCCTGAAGAGGCTCAAG
CTGATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGACGTTAGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGCGCATGCTTCCATTTCTGACAAATTTGACCTGTGGACGAAATCAAATCACAGAATGAACTGC
CTGTGAAACTATTTCACGCGGCTGACCTTTTTTGTGTGACGCCCGACACGAAGGCGCCACACTACATTGTGCAACGCCTC
ACAGATAGGCGCTACACGCCTGGCCAGCGTTGCACCCCAGACTGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGA
GCTAGGCGCTGCACTGTATAGTGCGGCGCTTAGCTCTCAGGCACTGCACCAGTGGTTGCACTACAAAATGAAGCAACCAC
TAGTGCAACGCCTAGAAGCTAGGTGCTACACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACTGACTTAGTAAT
TTTCGGATCACACGGGTGCGACGCTGGCCAGGCGTGTAGCGCCTATCTGTAAGGCGTTGCACAGTGTAGTGTGCGCGCCT
TCGTGTCGGGCGTCACACAAAAAGGTCAGCCGCGTGAAATAGTTTCACGGGCAGTTCATTCTGTGATTTGATTTCGTCCA
TAGATCAAATTTGTCAATTTTGCCTCCATTTCCTCAGCTCTCCGAAGAACCTGACGGCAGCCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCCTTCTCTTGTCAAGGAGTTGATTGCCAAGTGCTCGGCCGACGCCTAAGCTCAGTGATG
GTTGAT--------------------------------------------------------------------------
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>chr3D_1361
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--------------------------------------------------------------GTCTGGGAATGTCCCAAG
TTCGTCAAGAGAAAGGCCCTGGAGAAATCGAGCCATCTCAAGGACGATTCCTTCACCATCCGCTGCGACATCATCGTCCT
CAACGAGTTCCGCGCCAAGGAGGGGCTGCCGCCGGGCCCCGCTCTCGGATCCATCCCCGTGCCCCCGTCCGACCTGGGCC
AGCAGCTCGGCGACCTCCTCGCGGCCGACAAGGGCGCCGACGTCGTCTTCGAGGTCGGCGGCGAGACGTTCCCGGCGCAC
CGGTGCCTGCTCGCGGCCCGGTCGCCCGTCTTCAGCGCCGAGCTCTTCGGCTCGATGAGGGAGAGCAC---CGGCGCCGG
CGCGGTCCGCGTGTCCGACATGGAGGCGGGTGTGTTCAGGGCGCTGCTCCGCTTCGTGTACACGGACTCGTGGCCGCCGG
AGACGGCGGAAGGAGAGGAATTCGCCATGGCCCAGCATCTGCTCGTGGCGGCGGACAAGTACCGCATGGAGAGGCTCAAG
CTAATCTGCGAGGACAAGCTGTGCAAGAACATCGCGGCGGGCACGGCGGCGAGCATCCTGGCGTTGGCTGAGGTGCACCA
CTGCCATGAGCTCAAAGGTGCATGCT------------------------------------------------------
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------------------------TCCATTTCCTCAGCTCTCCGAAGAACCTGACGGCAGCCATGGCCGGCGACGACTTC
GAGAATCTGCGCTCAAGCTTCCACTCTCTTGTCAAGGAGTTGATTGCCAAGTGCTCGATCGATGCCTCAGCTCAGTGATG
GTTGATTCTTGATTGATCCTCGATGCTTGTGAAT-----TATGCTTTGCTAGCTAAGCTACCGGTAGTGCATGGACTGGG
AACCACCAAGTTGGTAGTACTAGCTTACATATCGTTGGGAACCATTTAC----------------------CTCTCTTGT
TTCAGCAATGGTACTCTGGC-ATTTAGTTTTCTTGTCATGTTCAAAATGATTACA-TCCTACTATCATTGCATTATGTGC
AACCTTACC----AAATAATTAAT----CAGTAATGAAGGGAATTGTGAGTTATCAGGTGA-------------------
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------------------CATTGCAGTTGAATCTCCATTTGTTCTGCAAATTCTTTTTTGGAGAAACGTCTGTTCTGCAA
ATTATCTGGCTAACACATTGTGTTCTCCTCTAATAAAGA------GTTTCAGATAA---------ATAACACATGAATTT
TTCCTTAATTGTTTTACTAATCCCAAGTCGCCTGCGATTTTCTTTTGTCTAAGTCTGATTTCTGAAAAGGGTGACTTGCA
ATTTGTTGATGCACATATAACATTTTCACCCGTTTGCACTTTTAATGGAAGAACATTACTTGGGAAATCTTATTACCGTC
AATCCTTGAGTTTAATGGAAGAATACTTTCACCCGTCAATCCTTCAGTTTAAATATGTAGATTTCCAGTTTGCACTCATT
TTATTCCTCAATGGAGGAATTGATGATCTCGCAAAT-CCATTGTCCGTTGGTGCAAAAGAAAGTTTG-------------
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---------------------------------------------------------------------CTTCTATCCAA
CATTGTCGCCTTGTCGGTGGTGGTGGCATTGTTAA---------------------------------------AGACTT
TATTACAAAGTTAGAAACCAGTAAATTAGGAT--GTCATTTTTCT
>chr4A_1419
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----------------------------------------AGGACCACTCCTTCACAATCAGGTGCGACATCGTCGTCTT
CAAGAAGTCCCGCGCCCAAGAGGGTGCGGCAGAGCCCGCCGCACCAAGGTCCGTCTCCGTGCCGCCGTCCGACCTGAACC
GCCACCTCGGCGGCCTCCTCGAGACCGGGAAGGGCGCCGACGTGGTGTTCGCGGTCGCCGGCCACAAGTTCTCCGCGCAC
CGCTGGCTGCTCGCGGCCCGGTCGCCGGTCTTCAATGCGGATTTCTTTGGCGCAATGAAGGAGAGCGATGTCGCCGCCGG
CGTGGTCCACATCGGCGACATGGAGGCACAGGTGTTCAAGGCCTTCCTCGTCTTCATGTACACCTACTCG---CTGCCGG
AGATGGCAAAGGAGGAGGAAGACGCCATGTACCAGCATCTCCTTGTGGCCGCGGACAGGTATAACATGAAGAGGCTCTAG
TTGATTTGCGAAGACAAGCTGTGCAAGAGAATTGATGGGAACACTGTGGCCAACGTGTTGGCGTTGGCTGAGCTTCACCA
CTGCCGTGATCTCAAGGACGCGTGCT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TCGAATTTCTCAGCACTCCTGCAAATCTTAGGGAGGCCATGGCCACTGACGGCTTC
GAGTATCTTAGCGCAAGCTGCCCTTCTGTTGTCAAGGAGCTGATTGCCATGTGCTC------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>chr4A_1442
--------------------------------------------------------------------------------
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---------------------------------------------------------------TGCGACATCGTCGTCTT
CAAGAAGTCTCACGCCCAAGAGGGACCGGCAGGGCCCGCTGCACCAAGGTCAGTCTCGGTGCTGCCATCTGACCTGAACC
GCCACCTCGCCGACCTCCTCGAGACCGGGAAGGGCGCCGACGTGGTGTTTGAGGTCGCCGGCCACAAGTTCTCCGCGCAC
CGCTGGCTGCTCGCGGCCCGGTCGCCGGTCTTCAATGCGGAGCTCTTTGTCGCAATGAAGGAGAGCGACATCGCCGTCAG
CGTGGTCCGCATCGGCGACATGGAGGCGGGGGTGTTCGAGGCTTTCCTCGGCTTCATGTACACCGGCTCG---CTGCCGG
AGATGGCAAAGGAGGAGGAAGACGCCATGTACCAGCATCTCCTTGTGGCCGCCGACAGGTATAACATGGAGAGGCTCAAG
TTGATTTGCGAAGACAAGCTGTGCAAGAGAATTGATGGGAGCACCGTGGCCAACGTGTTGGCGTTGGCTGAGCTTCACCA
CTGCCGTGATCTCAAGGACGCATGCT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------ACGAATTTCTCAGCACTCCTGCAAATCTTACGGAGGCCATGGCCACTGACGGTTCC
GAGCATCTGAGCACAAGCTGCCCTTCTGTTGTCAAGGAGCTGATTGCCTTGTGCTC------------------------
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---------------------------------------------
>SNPs
---------S------SS-------S--SS-SS---S--S-----S-----S----------------------------
--S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-----S---------------SSSSS----------S--------S----------S-S--S---SS--SS----S--S-
---SS-S----S----S--S---------SSSSSS---SSSSSSSS-S--------------------------------
S-S--------S--SSS--------------------S-------SS--------S----S-----------------S-
-------SS-S--SSS-S---------------S---S----SS-----------------S-------S-----S----
---------------S------S-SSSSS--S---SSSSSSSSSSSSSSSSSS----------S----------------
-S----------------S-----S--S------SSSSSSSSSSSSSSS---------------------------S---
--------SS---------------S--------SS---------S-S--------S-S--S----------------S-
-S-------S----------SS----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------S-----S-----------------
-----S-------------------------------SS-SSSSS-SSS-----------S-------------------
------------------------------S-------------------------------------------------
-----------------------------------------------------S---------S-----S-----S----
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------------------------------S---------------------------S---
---------------------------------------------------------S---S------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
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---------------------------S--------------------------------------S---------S---
--------------------------------------------------------------------------------
-------------------------------S-------------SS-S-------------------------------
--------------------------S-------------------S----S----------------------------
---------SSSS-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------SS---S-S-S----------------------
----------------S---------------------SSSSSSS----------SSSSSSSSSS---------------
------------------------------S-----------------------------------S-----------S-
----------------------------S---------------------------------------------------
S--------------S------------------------------------------------------------S---
S--------------------S----------------------------------SSSSSS-SS--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-
SS-S-SSS-SS-SSSSS--SSSSSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---------------------------------------------
>forward_40
--------------------ATTTCGGGGCATGAGGTTGT----------------------------------------
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---------------------------------------------
>reverse_2637
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CAGA
GCTGGGGCCGTAAG------------------------------------------------------------------
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---------------------------------------------
>forward_882
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GCGAACATATGCTCCTTG
GC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>reverse_4618
--------------------------------------------------------------------------------
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---------------------------------------------------------GTGGAGAAACGTCTGTTCTGC--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
