>input_sequence_60830
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-------------------------ATGGGGAACCGTCATGGCATAATGAGGCCGCGGCGGCTGAAGATGGCGAGAGCGA
CGGGGGAGAAGCTGGGGTCGTACGAGGCGGCGTGCAGCGCGGACCCGGAGCTGCGGAGCTTCGACGCGGCGCTGCGTCGG
CGCGCGAGCCTCGCCGTCTCCGCCGCGGCGTCCGGGGTGGAGGTCCGGTCCATGTCCCTGGGCTCCCTCCGGGAGGTCAC
CGGCTGCCTGGTGGAGATGAACCAGGAGGTGGTCCGCGTCGTGCTCGCCAGCAAGCACGACGTGTGGGGGTGCCCCGAGC
TGTTCGCGCTCGTGGAGGACTACTTCGACGCCAGCCTCCACACCCTCGACTTCCTCGCCGCGCTTGACAAGGCCCTCCGC
CGGGCCCGCGACTCGCAGCTCGTCCTGCACCTCGCGCTCCAAGTCCAGGATCCGGCGGTCCGGCCCGGGCGCGTGCTCGG
CGCGCTGCGGCGGTTCAAGGAGGCGGCCGGCGGCGAGCCGTTCACGGACGAGTTCTTCGCCGCGTTCCAGGCTGCGTACC
GGCAGCAGCTGGGCATGCTGGACAGGCTGCGGCGGCAGAAGCGCCGCCTGGACGGCCGCCTCCGGTCGCTCCGCGTCTGG
CGCCGCGTGACCGGCGTCGTCTTCGCGACCACCTTCGCGGCGATCCTCGTCTGCTCCGTGGTGGCCGCGGCCATCGCGGC
TCCGCCCGTGGCGGCCGCGCTGGCGGCCGCGGCGTCGCTGCCCGTGGGCTCCGCCGGGAAGTGGGTGGACGCGATGATGA
AACGGTACCGGGACGCGCTCCGGGGGCACAAGGACGTGGTGGGCGCAATGCAGGTCGGCACGTTCGTCGCCATCGAGGAC
CTGGACAGCATACGCGCGCTCGTCGGCCGGCTCGAGGTCCAGATCGGCTCCATGGTGGACTGCGCGGAGCTGGCGGAGCG
CGACGAGGAGGCTGCGAGGTTGGCCATTGAGGAGGTGAAGAAGAAGCTAGAGGCGTTCATGAAATGTGTGGATGACCTGG
GGCAGCAGGCGGACAAGTGTAGCCGGGACATCCGGCAGGCCAGGACCGTCGTGCTGCAGAGGATCATTCATCCCCATT--
-AA-----------------------------------------------------------------------------
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--------------------
>chr2D_1_TraesCS2D01G043800
TGTGCTATCATGGCCTGCTTTGTCTAGAGAGTGAAATGATGTTGTAAACGTAGTGAGTAGGTTCCTAGCTAAGGCCATTG
TTGTCTCCAATGTGGAAGACTTGGGCCATACTTGCGCCTAATCTACACAAAAGTTGGCAATGGTAACCATGCGAGCGACA
GTGCAGACAACACACATGGGCAGCATGTGTAGGGGTAGCTTGCCCTAGGACACCAAGGGACACGTAACTGTACTTGTGGC
ATATGCTATAGCTTCGTTCCTAAGGCAATACTGTACGTCCCCTAGAGGCCTAGACCGGTGTAAACAAAACAGAGTTCCTG
TAGCAAAACAAAATAGTGTTATGGCAGCCTTGTTCTTCGTCTTATTGTCAAGTTTATATGTTGTTT------CATCAATC
AATACAGAGAGCAAAGGTATCCATCCCTCTTTTCGGGTAGAAAAATCCAATGGTCTCCAGGAGATGTATACAAAAATGTA
GCGGGTTTTAAATTTCT-----------------------GTTGCACAAATATTTTAGCTACGGCCAAAATCATTG---A
ACTTTACTGAAATTTTGTTGTTGCAGTTTTTTTTACTTGGGCCAAAAGATTCAAAAAAATACATTTGAATTTGATTGAGA
TCTAACCAAATATTTT--AAATTCAAAAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ATGGCA
ATGGCATACTCGTCGACCTGGCATGGCAA-------------TGGCTCAGGCTGCAACCTTGTGCA--------------
------------------------------AGACGAGAGAGAAGCAAGCATGCGCGTCCACCTCTGCAATTTTTGCACAC
ACGTCGGCCGCTCCTTGGGTTGCTTCCTCCGGTCGCCATTGCCGGCCCCCACCACCCTACCAAGCTTCCTCATGCGTACA
AGCCATCGACCGTGCCCCTTCCTCTCCTTCACAGCGTTCACATACTTCCACATTCCACGACTATAAAGTTTGTCAATCGT
GAGCGCGCTATTCTTACAG------AGCATCACGGTCACAGTACGCCACTACGCTCGAAGCTCTGCTTCTTTTCTTCTTG
AGTTCTATAGGGT---TCGCCGGCCATGGGGAACCGTCATGGCATAATGAGGCCGCGGCGGCTGAAGATGGCGAGAGCGA
CGGGGGAGAAGCTGGGGTCGTACGAGGCGGCGTGCAGCGCGGACCCGGAGCTGCGGAGCTTCGACGCGGCGCTGCGTCGG
CGCGCGAGCCTCGCCGTCTCCGCCGCGGCGTCCGGGGTGGAGGTCCGGTCCATGTCCCTGGGCTCCCTCCGGGAGGTCAC
CGGCTGCCTGGTGGAGATGAACCAGGAGGTGGTCCGCGTCGTGCTCGCCAGCAAGCACGACGTGTGGGGGTGCCCCGAGC
TGTTCGCGCTCGTGGAGGACTACTTCGACGCCAGCCTCCACACCCTCGACTTCCTCGCCGCGCTTGACAAGGCCCTCCGC
CGGGCCCGCGACTCGCAGCTCGTCCTGCACCTCGCGCTCCAAGTCCAGGATCCGGCGGTCCGGCCCGGGCGCGTGCTCGG
CGCGCTGCGGCGGTTCAAGGAGGCGGCCGGCGGCGAGCCGTTCACGGACGAGTTCTTCGCCGCGTTCCAGGCTGCGTACC
GGCAGCAGCTGGGCATGCTGGACAGGCTGCGGCGGCAGAAGCGCCGCCTGGACGGCCGCCTCCGGTCGCTCCGCGTCTGG
CGCCGCGTGACCGGCGTCGTCTTCGCGACCACCTTCGCGGCGATCCTCGTCTGCTCCGTGGTGGCCGCGGCCATCGCGGC
TCCGCCCGTGGCGGCCGCGCTGGCGGCCGCGGCGTCGCTGCCCGTGGGCTCCGCCGGGAAGTGGGTGGACGCGATGATGA
AACGGTACCGGGACGCGCTCCGGGGGCACAAGGACGTGGTGGGCGCAATGCAGGTCGGCACGTTCGTCGCCATCGAGGAC
CTGGACAGCATACGCGCGCTCGTCGGCCGGCTCGAGGTCCAGATCGGCTCCATGGTGGACTGCGCGGAGCTGGCGGAGCG
CGACGAGGAGGCTGCGAGGTTGGCCATTGAGGAGGTGAAGAAGAAGCTAGAGGCGTTCATGAAATGTGTGGATGACCTGG
GGCAGCAGGCGGACAAGTGTAGCCGGGACATCCGGCAGGCCAGGACCGTCGTGCTGCAGAGGATCATTCATCCCCATT--
-AACTGCTCAAAACCCAGGAGTAGACAT-CAGAGATGTGATTCGTGATTCATTTCACTAACATTCAATTTAGCCTCGTTT
AGTA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTTTGTGGTTTCAAGCGGCA
TATACATTAAAATAATTGAATTTTTTTATTCGGCAAACATTCGCCATATAGGAATATTACCCAACGCAATACTCATTTT-
-TTGTCCAATAAATTGAAATCAACCTATCATAGTTTACTGAAAACCTATTTGGCAACCCAATGTCCTCTCTTGCATCCCA
CTTCTCATGTGATTATATCCATCCGATCACTGGCGGAGCTAGCATGAACATTCATGATATTTTGTATTAGAAGGGTCGTT
GTTACTGTGTCTAGGGCTATAGCCATAACTGTTCTAGGCATGTCTTCGCCACTGCACCTGATCGATTCACCGTCCTCATT
TTCATCATGTACGTGCGTTCATTCTGGTGTCGACCGCCTTGCTTGTTTTTCCCTCTATATACTATTTAAAAAATGAAAGG
TTCCATCTTTCGTCAATTTTTCTCCTTCGGACCTTTTCGCCCAACCTTTCACCTGCCACCGAATTTTCTCGAGTTTTCAT
TCCCTTATGATTTTTTTGACAGAAAGACAGTAAGGGAGGCTCCTACGGTATAATTGGTGCAACAAACCCAAATTGCAAGT
ATCATGTCTTGAACCTGGATGGCTGGAAAGGCATCAACCCTTTCCCCTTATGATTTTCATCAAACCAATCTTTGATAACC
CAATAAACCAGTTCAATCTATTGTATAGCAATAAATTCATGGTCCGTAAATAAAATGTTTTTAGGGTAAAACCTGATATC
GGTAATACATCTTTGGTAACCCAGTAAATAGCAATAAATTCATGATTTGTAAACAGATAAATGGTAATTGATCTCTTAAG
TTTGGTAACCCAATAAAGATGATCAGTCACGGGAACATACCTATTTTGTTAGTTTAAGCAATGACAGAAAATCTATGCTT
TATAACCAAAACATAATCTT
>chr2A_1
TGTGCTATCATGGTCTGCTTTGTCTAGAGAGTGAAATGCTGTTGTATACGTAGTGACTAGGTTCCTAGCTAAGTCCATTG
TTGTCCCCAATGTGGAAGACTTGGGCCATACTTGCGCCTATTCTACACAAAAGTTAGCAATGGTAACCATGCGAGCGACG
GTA---ACAACACACATGGGCAGCATGTGTAGGGGTAGCTTGCCCAAT----------GACGCGTAACAGTGCTTGCACC
ACG---TATAGCTTCGTTTCGAAGGCAATAGGTCC-------------CCTAGACCGGTCAAAACAATATAGAGTTCCTG
TAGCAAAACAAAATAGTATTATGGCAGCATTGTTCTT------ACTGTCATATTTATGTGCCGTTTTAAGTGCATCAATG
AATACAGAGACAGGGGT-----ATCCCTCTTTCAAAAAATACCGTTCCAATGGCCTCAAGGAGATGTACAACCCTCTGAG
TACAGTAGTGAGTTCTAAACATGTATAGCCGACAAGTTGAGTTTCAGAAATATTTTAGCTACAGCTAAAATCATTATTTA
ATTTCACTGAAATAATT------------------------------------------TAAATTTGATTTTGATTGAGG
TATAATCAAATATTTTGGAAATTCAAAATGTAATTTACACTTTTGTGTACTACAACAATTACTGAAATATCCCCGCAGAA
AAACAATTGCCGAAATATTTTAACTGAAAAACAATTATTAAGAATGTACGGAAATAAATGAAATTTCCTAAATTTTGATC
AAATTCGCCCAAAAGTGAAAACCATATGCCACCTAATTAAGCGCGCTCATCCTCCGCTTCTCCCAGCCAAGCATATGGCA
ATGGCAGACTCGTCAACCTGGATTGCTTTTCCAGCGACACCCTGGCTCTGGCTGCAACCTTGTGCCTCTCCTATCCTAGT
CGTAGTCGGTCACTCCCGTGCTGCAATGGTAGACGAGAGAGAAGCAAGCATGCGCAACCACCTCTACAATTTTTGCACAC
ACGTCGGCCGCTCCTTG-GTTGCTTCCTCCGGTCGCCATTGCCGGCCCCCACCACCCTACCAAGCTTCCCCATGCGTACA
AGTCATGGGCCGTGCCCCTTCCTCTCC---------TTCACACACTTTCAGATTCCACGGCTAT-AAGTTTGTCAATCGT
GAGCGCGCAATTGTTTCAG------AGCATCACGGTCACAGTACGCCACTACGCTCGAAGCTCTGCTTCTTTTCTTCTTG
AGTTCTATAGCGT---TCGCCGGCCATGGGGAACCGTCAGGGCACAATGAGGCCCAGGCGGCTCAAGAGCGCGAGAGCGA
CGGGGGAGGAGCTGGGGTCGTACGAGCAGGCGTGCAACGCGGACCCGGAGCTGCGGAGCTTCGACGCGGCGCTGCGTCGG
CGCGCGAGCCTCGCCGTGTCGGCGGCGGCGTCCGGGGTGGAGGTGCGGTCCATGTCCCTGGGCTCCCTCCGCGAGGTCAC
CGGCTGCCTGGTGGAGATGAACCAGGAGGTGGTCCGCGTGGTGCTCGCCAGCAAGCACGACGTGTGGGGGTGCCCCGAGC
TGTTGGCGCTGGTGGAGGACTACTTCGACGCCAGCCTCCACACCCTCGACTTCCTCGCCGCGCTCGACAAGGCCCTCCGC
CGCGCCCGCGACGCGCAGCTCGTCCTCCACCTCGCGCTCCAGGTCCAAGACCCGGCCGTCCGGCCCCCGCGCGCGCTCGG
CGCGCTGCGGCGGTTCAAGGAGGCGGCCGGCGGCGAGCCGTTCACGGACGAGTTCTTCGCCGCGTTCCAGGCCGCGTACC
GGCAGCAGCTGGGCATGCTGGACAGGCTGCGGCGGCAGAAGCGCCGCCTGGACGGGCGCCTCCGGTCGCTCCGCGTCTGG
CGCCGCGTGACGGGCGTCGTCTTCGCGACCACCTTCGCGGCGATCCTCGTCTGCTCGGTGGTGGCCGCGGCCATCGCCGC
GCCACCCGTCGCGGCCGCGCTGGCGGCCGCGGCGTCGCTGCCCGTGGGCTCCGCCGGGAAGTGGGTGGATGCGATGCTGA
AGCGGTACCGGGACGCGCTCCGGGGGCACAAGGACGTGGTGGGCGCAATGCAGGTCGGCACGTTCGTCGCCATCGAGGAG
CTGGACAGCATACGCGCGCTCGTCGGCCGGCTCGAGGTCCAGGTCGGCTCCATGGTGGACTGCGCGGAGCTGGCGGAGCG
CGACGAGGAGGCTGCGAGGTTGGCGATTGACGAGGTGAAGAAGAAGCTAGAGGCATTCATGAAGAACGTGGATGATCTCG
GGCAGCAGGCGGACAAGTGTAGCCGGGACATCCGGCAGGCCAGGACCGTCGTGCTGCAGAGGATCATCCATCCCCATT--
-AACTGCTCAAAACCCAGGAGTAGATCGACAGAGATGTGATTCGTGATTCATTTCACTAACATTCAATTTAGCCTCGTTT
AGTACACCTGCTAAGTGGATTTTGCCTCGAACTGGTTGTGTTAAATTAAATACTGATGGATCATATGATGAGGACGGCTT
AGCTGGGGCAGGTATGGTGCTCACAGATGACATGGGCAGTATTATCTTTTCTTTCCACAGACAACTATTTTGTTGTAGAG
ATGCACTTGAAGCGGAATTGTGTGCTTGCATGAAGGGCCTTTCATTTGCCATTCAAAGAAGTGATCTTCCAATTATCATT
GAGATGGATTCAATCGTTGCAGACAAGCTTATCCAGGCGAAAGAAACAGATAGATTGATCTTTACTTCACTTATCAAGGA
GATTAGGTATCTCATGAATCTTCGTGATTGTTGTATTACTCATGTAGCTCGCTCATAAAATAGAGTTAGTGATAGTCTAG
CTAATTGTGCTCGTACTGAAGGGAGAACCATGACATGGGTAGGTTCTGGCCCTGATGAGTCTCTAGTGCTAGCTGCTGAT
GATTGTAAGGACTTGGTGAGTTGAGTAATACAATTATTTCACCCGCAAAAAAAAAGTATATTTTGTGGTTTCAAACGGCA
TATACATTAAAATAATTGAATTTGTATTTAGTG--AACATTCGCCATATAGGAATATTACCCAATGCAATACTCTTTTTC
CTTGTCCAATAAATTGAAATCAACCTAATATAGTTTACTGAAAACCTATTTGGCGATCCAATTTACTCTCTTGCATCCCA
CTTCTCACGTGATTTTATCCATCCGATCAATGGCGGAGCTAGCATGAACATTC---------------------------
--------------------------------------------------------------------------------
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>chr2B_855
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------------------------------ACAGTGTTCACACACTTCCACATTCCACGACTAT-AAGTTTATCAATCGC
GAGCGCGCAATTCTTTCAGTTTCAGAGCATCACGGTCACAGTACGTCAGTACGCTCGAAGCTCTG-----TTTCTTCTTT
AAGGAGTCTCTTGGGCTCGCCGGCCATGGGGAACCGTCATGGCACAATGAGGCCAAGGCGGCTGAAGAGTGCGAGAGCGA
CGGGGGAGGAGCTGGGGTCGTACGAGGCGGCGTGCAGCGCGGACCCGGAGCTGCGGAGCTTCGACGCGGCGCTGCGGCGG
CGTGCGAGCCTCGCTGTAGCGGCGGCGGCGTCCGGGGTGGAGGTGCGGTCCATGTCCCTGGGCTCCCTCCGGGAGGTCAC
CGGCTACCTGGTGGAGATGAACCAGGAGGTGGTCTGCGTGGTGCTCGCCAGCAAGCACGACGTGTGGGGGTGTCCCGAGC
TGTTCGCGCTCGTGGAGGACTACTTCGACGCCAGCCTCCACACCCTCGACTTCCTCGCCGCGCTCGACAAGGCGCTCCGC
CGCGCCCGCGACTCGCAGCTCGTCCTGCACCTCGCGCTCCAATGCCAGGACCCGGCCGTCCGGCCCGCGCGCGCGCTCGG
CGCGCTGCGGCGGTTCAAGGAGGCGGCCGGCGGTGATCCGTTCACGGACGAGTTCTTCGCCGCGTTCCAGGCGGCGTACC
GGCAGCAGCTGGGCATGCTGGACAGGCTGCGGCGGCAGAAGCGCTGCCTGGACGGTTGCCTCCGGTCGCTCCGCGTCTGG
CGCCGCGTGACGGGCGTCGTCTTCGCGACGACCTTCGCGGCGATCCTCGTCTGCTCGGTGGTGGCCGCGGCCATCGCCGC
TCCGCCCGTCGCGGCCGCACTGGCGGCCGCAGCGTCGCTGCCCGTGGGCTCCGCCGGAAAGTGGGTGGACGCGATGCTGA
AGCGGTACGGGGACGTGCTCCGGGGGCACAAGGACGTGGTGGGCGCAATGCAGATCGGTACGTTCGTCGCCATCGAGGAC
CTGGACAGCATACGCTCGCTCGTCGGCCGGCTCGAGGTCCACATCGGCTCCATGGTGAACTGCGTGGAGCTGGCGGAGCG
CGAGGAGGGGGCCGTCAGGATGGTGATTGAGGAGGTGAAGAAGAAACTGGAGGTGTTCATGAAGAGCGTGGACGATCTCG
GGCAGCAGGCGGACAAGTGTAGCCGGGACATCCGGCAAGCCAGGACCGTCGTGCTGCAGAGGATCATTCATCACCATTAA
TAACTGCTCAAACACACGGAGTAG--------------------------------------------------------
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--------------------
>SNPs
-------------S------------------------S-------S---------S----------------S------
-----S----------------------------------S--------------S-----------------------S
--SSSS---------------------------------------S-SSSSSSSSSSS---S------S--S----SSS-
-SSSSS------------S-S---------SSSSSSSSSSSSSSSSSS-----------SS------S-S----------
-----------------S----------S--------SSSSSS-S-----SS-----S--SS-----------------S
----------SSSSS-SSSSSS----------SSSSSS-S-SSSS--------S---S----------S-SSSSSS--SS
SSSS--SS-S-S--SSS--------------------------S--S---------------S--S---------S----
-S--S--------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S----------S
-S---S----------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------S------SS--SSSS-------------------S----------------S--------------
-------------------------------------------------------SS--------S--------------
-----------------S---------------------------------------------------S----------
--S---S-S------------------SSS----S-------S---------------------S---------------
--------S------S----------------------------------------------------------------
----------S---------------------------------S---------SS------------SS----------
--------S-----------------------------------------------------------------------
-----------------S--S--S--------------------S-----------------------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------S---------------
--S-----------------------------------------------S-----S----------S-----S------
------------------------------------------------------------------------S-------
-------------------------------------------------------S------------------------
-----------S--------------------------------------------S--------------------S--
---------S------------------------------------------------------------------S---
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S--------------------------------------SS-S--------S--S-
--------------------------------------------------------------------------------
-------------------------SSS----------------------------------------------------
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--------------------------------------------------------------------------S-----
-----------------------S-S-S-SSS-SS-----------------------------S---------S-----
---------------------------SS-------------------------S-S-----S-S---------------
-------S------S--------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_218
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--------------------------------------CTTGCCCTAGGACACCAAGG----------------------
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>reverse_2077
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----------------------------------------------------------------------------ATGA
AACGGTACCGGGACG-----------------------------------------------------------------
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--------------------
>forward_301
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-----------------------------------------CTAGAGGCCTAGACCGGTGT-------------------
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>reverse_2304
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---------------------------------------------------------------ATGTGTGGATGACCTGG
GG------------------------------------------------------------------------------
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--------------------
>forward_1129
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---------------------------------------------------------------------TCATGCGTACA
AGCCATCGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------
>reverse_3374
--------------------------------------------------------------------------------
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-------------TGCGTTCATTCTGGTGTCGA-----------------------------------------------
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--------------------
