>input_sequence_60826
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----------------------------------------------------------------------------ATGA
GCCCTCACGCGAGGCAGCCGAAGCCACTCCAAGATCGTCAGCGGCAGGATCAGCAGGGTGAGCCGCTGGTCAAGGCTAGG
CAGGTGAGGAGGCGGCTGCGCACGTCCACGAGCAGGCCGTTCCAGGAGAGGCTGGTCGACATGGCGGCGGCCAGGAAGGA
GATCGCCGCCGCTCTCAGGGTCCACAGGGCCGCCGCCGCCGCGGTGACCATGCGATCCAGAGATCAGCACGAGCAGCAAG
CGCAGTGGCCCCCCTGCGACGCCTTCTTCTCCGACCACTTGCGCGACGACTCCACGCGGCGTTACCACGCACCTGTACTT
CCGGTCGCGCCGCCTGTCGTCGTCGGCGGTGGCCTGCTGGGTCACCTGGACCGCAGCCTCCCGGCGCTGCCGCTAGGCCT
CAACCTCAGCTTCCATGGTTTTGCTGGCTCATCTGTGTATGATGCCACTAACAGTGCTGGCGCTTCTCGTAACCGTCCTT
TGATCCAACCGCCGCCCGCTGACTCCTCTGACTCTCGGGCGCGTTCGTCTCCCCCATTGGCGGTGATGCTGAGCCAAGAA
GGTTCACCGGCGGTCGACGCCCTGGAGAACGCGGCGTCGTTGGCAGGCGCGCCACACATGGGGCCGGAGGGCGAGAGTGA
GGCCACCTCCTTGCTTGGGTGGGGTGACGCGGCCGCCACGCCGGCGTGCGCGTGGTGGAGCGACGTCCTCGATCAGGGCA
CCGAGGGTAGCGGCTGCGTCGGCGAGCTGTGCGCGCCGGCCGGGCACGAAGGAGGCGACGTTGACGTGGCGAGTATGCCG
GCTGCGGGGTGGCTGTACGAAGGCTCCGGCGACCAAGGAGTCACATGGAGCGGCAAGCCGGTCGGCGGCCAGGAGACGCA
TCT---------------CTACCACCAGCGGGACGGCGAAGACATCGCCTTGCCATGGTAAGCCGTACACGCATGTATCT
-AGTAGAGTT-----------------------------CGAATT-----------GTTCATCATCTGC-TAAGTGGCGA
TCCGTGACTGTTGCAAAATGTGTTCAAGTGATCTGTATTTGCTTTCGCAGCATGGAGATCGAAGGATGGCATGGGAAATG
GTTCGAT-GAGGAGCCAATTTTTCCTTAG---------------------------------------------------
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>chr2B_1_TraesCS2B01G194800
TGGTCATAATGCTTGTATGGAGAATTTAGAGTTGTGGAATTTGGCTCATGATAAACATGTTCCACAAGAGATGTTATGGT
TGAGTTTTTGGACAATTATTGGAAACCTATTGTGCAAGCAAAGCGATACTCCAGCAGCGAGATGATTAAAGGGAACGTGA
CTATTGATATGGCTCCGATCAAGGTGAAGGTGAAGCCGTCGCTGATCCCCGTGGCATGACCTCCTCCACTGGTGGATCGT
GTAGCCCTATCGGTTGATGGGTCATTTTCTTCTAATGATGGTTCAGCTGCAAACATCATGATTTTGAGACGTGCTAGTGG
CACGGTGGTGTTTGCAGCCTACCATGTGGTTTTCAAGTGCAATGATGGGTTGGAAGCAGAGATTCATGCACTCATGTAGA
GCATGGCTCTGGCCATCCAACACTCAGAATTGCCGATTATCGTCCAGTCAGATTCTTCTAAGGCTCTAGCGATCCGATCG
AGTGATAACCTTTTCAGGTCCGCCTATGGTCATTTGGCAGCAGAGATCAAAGCTCTTCAGGAAGAGAGGGAGTTTATTCC
ACAGAAGCTCAACAGGGAACATAATAA-----GGTAGCCCATTAGTTGGCTTGTACATATGAAGTCTTGTACTGTAATTT
GGCTCCTTAGAGGTCCGCCGTGTATCAAGGAGTTATTGCCTCTTGATTGTAATAACCCTATAGTTATGGAACAAAACTCC
TATTTTCCCCGCACAAGAAGAAAAAGTGGCTCTTCTCCTTAAAAAAACTAGGAGCAAAGAGCGAGTACATGAATGCACAA
CCTAGTGCCACGGCACACCTTCAACATCATACATCCATACCGCTGTAGTCCTGTACAGCCATGCATTAGGCAGGCCAAAG
GTACGGAGAAAATCTGATCGGAGTAGCCT-----------------------------CACAGTCCACACACGATCGAAC
TAGCAGCACAAGCCAGGAACTTATGTTT--AAAAAAAAACCAAGAACAGTAGAACACCCACGCCTAATTAGACGCCATGA
GCCCTCACGCGAGGCAGCCGAAGCCACTCCAAGATCGTCAGCGGCAGGATCAGCAGGGTGAGCCGCTGGTCAAGGCTAGG
CAGGTGAGGAGGCGGCTGCGCACGTCCACGAGCAGGCCGTTCCAGGAGAGGCTGGTCGACATGGCGGCGGCCAGGAAGGA
GATCGCCGCCGCTCTCAGGGTCCACAGGGCCGCCGCCGCCGCGGTGACCATGCGATCCAGAGATCAGCACGAGCAGCAAG
CGCAGTGGCCCCCCTGCGACGCCTTCTTCTCCGACCACTTGCGCGACGACTCCACGCGGCGTTACCACGCACCTGTACTT
CCGGTCGCGCCGCCTGTCGTCGTCGGCGGTGGCCTGCTGGGTCACCTGGACCGCAGCCTCCCGGCGCTGCCGCTAGGCCT
CAACCTCAGCTTCCATGGTTTTGCTGGCTCATCTGTGTATGATGCCACTAACAGTGCTGGCGCTTCTCGTAACCGTCCTT
TGATCCAACCGCCGCCCGCTGACTCCTCTGACTCTCGGGCGCGTTCGTCTCCCCCATTGGCGGTGATGCTGAGCCAAGAA
GGTTCACCGGCGGTCGACGCCCTGGAGAACGCGGCGTCGTTGGCAGGCGCGCCACACATGGGGCCGGAGGGCGAGAGTGA
GGCCACCTCCTTGCTTGGGTGGGGTGACGCGGCCGCCACGCCGGCGTGCGCGTGGTGGAGCGACGTCCTCGATCAGGGCA
CCGAGGGTAGCGGCTGCGTCGGCGAGCTGTGCGCGCCGGCCGGGCACGAAGGAGGCGACGTTGACGTGGCGAGTATGCCG
GCTGCGGGGTGGCTGTACGAAGGCTCCGGCGACCAAGGAGTCACATGGAGCGGCAAGCCGGTCGGCGGCCAGGAGACGCA
TCT---------------CTACCACCAGCGGGACGGCGAAGACATCGCCTTGCCATGGTAAGCCGTACACGCATGTATCT
-AGTAGAGTT-----------------------------CGAATT-----------GTTCATCATCTGC-TAAGTGGCGA
TCCGTGACTGTTGCAAAATGTGTTCAAGTGATCTGTATTTGCTTTCGCAGCATGGAGATCGAAGGATGGCATGGGAAATG
GTTCGAT-GAGGAGCCAATTTTTCCTTAGAAAA-----------------------------------------------
------------------------------------------------------TAAGAAGCTGAGGATTCATAGTAGGG
ACAATCCGATTCGTCTGCATCAAGCATGTGCTAATGTGCTC----------------------------GTTCTCTGAAT
TCCATAATCAATTTGGCGAGAAAATCTCC--AGACTGTTTCAATGTGCCTGAGCTTATTTTACAGGACAGCTT-CGGGCA
ATGTTTGCCCAAAAA--TTTGACGAGAAAATTAAG------CATGATTACAACGACTTTAATCCAGTTAACAGGAAATCC
CACATGGA---------------AAATCAACGAATGGGGGGAGCAGTGCTGCCAAGTTCAGACATGCTTACACGAACCAC
GGTTACTAGAACATCAATACAACAGCAAATCCCAGCAGCAGCACCTCTGCAAGGGTCTCTCATCACCAAATCTAGGAACG
AGCACCCATGAGGGGCAGACGGCCAAGGCGAAAACTTACGGGCACAGGAAGGGCAAGTTATGGGAAGGTGGATTATCCGA
CAATACTGTACTT-GAATAACAATAAACATAGGCCATAGGCTACACCACATGATTCTTCGCTTGCGAAAGGAAGACTGGA
CCCTTTGACAGGGGATGTGCCTGTGATGCGATGTCGACAAATATGAACATGGCTGGGGGCTCGGAGGCCTCGACGCTTTC
TTAGCTCAACTGTAAGTAATACGATGATCTTCTCAGCTCAGACCTCCATGTAATATTCAAAGAAGCCGCCTAGCTACTCC
ACTAGTCTTGTATATGCAGTTCCAGTTCCAGTTC------CATTCCATAATCGGACAACAAG--------CAGATCACCA
TCCCGAGTTTACTTGAAGGGGGCAAACAGAATTGATGAGTTATGCCCACCGAATCCGAATGAGTTTGACAGCGCCACCTT
TACTTCGCACCTCTCCTTCTCTGCTCCAACTAAAACGCCCACATCCTGTAGCCAAGATTGAGATCAGAACATTCATTGGA
TGAAATGAGCTCTAGTGATATATTACTGCAAATTTTGTTCATTCATATCCTAGCTTATTTAGTGCTAGCAAATACTCCC
>chr2D_38
-------------------------------------AATATGGCTCATGATAAACATGTTCCGCAAGAGATATTTTGGT
TGAGTTTTTGGACAATTATTGGAAATCTATTGTGCAAGCAAAGCGATACTCCACCAACGAGATGATTAAAGGGAACGTGA
CTATTGATATGGCTCCGATCAAGGTGAAGGCGAAGCCGTCGTTGATCCCCGCGGCATGGCCTCCTCCACTGGTGGATCGT
GTGGCTCTATCAGTTGATGGGTCATTTTCTTCTAATGATGGTTCAGCTGCAAACGGCATGATTCTGAGACGTGCTAGTGG
CATGGTGGTGTTTGCAGCCTACCATGTGTTTTTCAAGTGCAATGATGCGTTGAAAGCAGAGATTCATGCACTCATGCAGA
GCATGGCTCTGGCCATCCAACACTCAGAATTACCGATTATCGTCCAGTC-GATTCTTCTAAGGCTCTAGCAATCCTATGA
AGTGATAACCTTTTCAGGTCCGCCTATGGTCATTTGGCAGCAGAGATCAAAGCTCTTGAGGAAGAGAGGGAATTTATTCC
ACAGAAGCTCAATAGGGAACATAATAGGATAGGGTAGCCCATCAGTTGGCTTGTACATATGAAGTCTTGTACTGCAATTT
GGCTCCTTAGAGGTCCGCCATGTATCAATGAGTTATTGCCTCTTGATTGTAATAACCCTATAGTTATGGAATAAAACTCC
TATTTTCCCCACAC---AAGAAAAAGTGGCTCTTCTCCTTAGAAAAACTAGGAGCAAAGAGCGAGTACATGAATGCACAT
CCTAGTGCCACGGCACACCTTCAACATCATACATCCATACCGCTGTAGTCCTGTACAGCCATGCATTAGGCAGGCCAAAG
GTACGGAGAAAATCGATACCATGGTTCGAGTGAGACTCCGATCAGATGATATAACCTCCACAGTCCACACACGATCGAAC
TAGCAGAACAAGCCAAGAACTTATGTTA--AGAAAAAAGCCAAGAACAGTAGAACACCCACGCCTAATTAGACGCCATGA
GCCCTCACGCGAGGCAGCCGAAGCCACTCCAAGATCGTCAGCGGCAGGATCAGCAGGGTGAGCCGCTGGTCAAGGCTAGG
CAGGTGAGGAGGCGGCTGCGCACGTCCACGAGCAGGCCGTTCCAGGAGAGGCTGGTCGACATGGCGGCGGCCAGGAAGGA
GATCGCCGCCGCTCTCAGGGTCCACAGGGCCGCCGCCGCCGCGGTGACCATGCGATCCAGAGATCAGCACGAGCAGCAAG
CGCAGTGGCCCCCCTGCGACGCCTTCTTCTCCGACCACTTGCGCGACGACTCCACGCCGCGTTACCTCGGACCTGTACTT
CCGGTCGGGCCGCCTGTCGTCGTCGGCGGTGGCCTGCTGGATCACCTGGGCCGCAGCCTCCCGGCGCTGCCGCTGGGCCT
CAACCTCAGCTTCCATGGTTTTGCTGGCTCATCTGTGTATGATGCCACTAACAGTGCTGGCGCTTCTCGTAACCGTCCTT
TAATCCAACCGCCGCCCGCTGATTCCTCTGACTCTCGGGCGCACTCGTCTCCCCCATTGGCGGTGATGCTGAGCCAAGAA
GGTTCACCGGCGGTAGACGCCCTGGAGAACGCGGCGTCGTTGGCAGGCGCGCCGCACATGGAGCCGGAGGGCGAGGGTGA
GGCCACCTCCTTGCTCGGGTGGGGTGACGCGGCCGCCACGCCGGCGTGCGCGTGGTGGAGCGACGTCCTCGATCAGGGCA
CGGAGAGTAACGGCTGCGTCGGCGAGCTGTGCGCGCCGGCCGGGCACGAAGGAGGCGACGTTGACGTGGCGAGTATGCCG
GCCGCGGGGTGGCTGTACGAAGGCTCCGGCGACCAAGGAGCCACATGGAGCGGCAAGCCGGTCGGTGACCTGGAGACGCA
TCTTAGCGGCGGCGACGACTACCACCAGCGGGACGGCGAAGACATCGCCTTGCCATGGTAAGCCGTACACGCATGAATCT
-ACTAGTAGAGATCGAATCTTTTTTTTTTTTGACGTATACGAATCATTGCTGCCAAGTTCATCATCTGCTTAAGTGGCGA
TCCGTGACTGTTGCAAAATGTGTTCAAGTGATCAGTATTTGCTTTCGCAGCATGGAGATCGAAGGATGGGACGGGAAATG
GTTCGAT-GAGGAGCCAGTTTTTCCTTAGAAAATACTCCCTCCGTCCGGAAAAACTCGTATTTAGCACCAAGTTAATGCT
AGATACATCCAGTTGAGAGACAAGCTTGAGACAAGTTTTTTCGGACGGAGGGAGTAAGAAGCTGAGGATTCATAGTAGAG
ACAATCCGATTCGTCTGCGTCAAAGAC-TGCTGATGTGCTC----------------------------GCTCTCTGAAT
TCCATAATCAATTTGGCGAGAAAATCTCC--A--CTGTTTCAATGTGCCTGAGCTTCTTTTACAGGACAGTTT-CGGGCA
ATGTTTGCCCAAAAAATTTGGGA-AGAAAATCAAGCAATACCATGATTACAACGACTTTAATTCAGTTAACAGGAAATCT
CACATGGAGAATAAGTATACTATAAATCAACGAA-GGGAGGAGCAGTGCTGCCAAGTTCAGACATGCTTACACGAACCAC
GGTTACTAGAACATGAATACAACAGCAAATCCCAGCAGCAGCACCTCTGCAAGGGTCTCTCGTCACCAAACCTAGGAAAG
AGCACTCATGAGGGGCAGACGGCGAGTT-GAAAAATAGCAGGCCCAGAAAGGGCGAATCAT--------GGTTTATCCAA
CATTACTGTAC-T-GAATAACAATAAACATAGGCCATAGGCTACACCACATGATTCTTCACTTGCGAAAGGAAGACTGGA
CCCTT-GACAGGGGATGTGCCTGCGATGCGATGGCGACAAATATGAACATGGCTGGGGGCTCGGAGGCTC--------TC
TTAGCTCGACTGTAAGTAATACGATGATCTTCTTAGCTCAGACCTCCATGTAATATTCAAAGAAGCCGCCTAGCTACTCC
ACTAGTCTTGTATATGCAGTTCCAGTTCCAGTTCCAGTTCCATTCCATAATCGGACAACGAGGAAGTAAGC--ATCACCA
TCCCAGGTTTACTTGAAGGGGGCAAACAGAATTGATGAGTTATGCCCACCGAATCCAAATGAGTTTGACAGCGCCACCTT
TACTTCGCACCTCTCCTTCTCTGCTCCAACTAAAACGCCCACATCCTGTAGCCAAGATTGAGATCAGAACATTCATTGGA
TGAAATGAGCTCTAGTGATATATTACTGCAAAATTTGTTCATTCATATCTTAGCTTATTTAGCGCTAGCAAATA-----
>chr2A_899
TAGCG---------------------------------------------------------------------------
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--------------------------------------------------------TCCACAGTCCACACACGATCGAAC
TAGCAGCACAGGCCAAGAGCACCTGTTCAAAATAAAAGGCCAAGAACAGTAGAACACACACGCATAATTAGACGCCATGA
GCCCCCACGCGAGGCAGCCGGAGCCACTGCAAGATCGTCAGCGGCAGGATGAGCAGGGTGAGCCGCTGGTCAAGGCTAGG
CAGGTGAGGAGGAGGCTGCGCACGTCCACGAGCAGGCCGTTCCAGGAGAGGCTGGTCGACATGGCGGCGGCCAGGAAGGA
GATCGCCGCCGCTCTCAGGGTCCACAGGGCCGCCGCCGCCGCGGTGACCAGGAGGTCCAGAGATCAGCACGAGCAGCAAG
TGCAGTGTCCCCCCTGCGATGCCTTCTTCTCCGACCACTTGCGCGACGACTCTCCGCCGCGTTACCTCGCACCTGTACTT
CCGGTCGCGCCGCC---CGTCGGCGGCGGCGGCATGCTGGGTCACCTGGACCGCAGCCTCCCGGCGCTGCCGCTGGGGCT
CAACCTCAATTTCCATGGTTTTACTTGCTCGTCTGTGTATGATGCCACTAGCAGTGCTGGCGATTCTCGTAACCGTCCTT
TGATCCAACCGCCGGCCGCTGACTCCTCTGACTCTCGGGCGCGCTCGTCTCCCCCATTGGCGGTGATGCTGAGCCAAGAA
GGTTCACCGGCGGTCGACTCCCTGGAGAACGCGGCGTTGTCGGCAGGTGCGCCGCACGTGGTGCTGGAGGGCGAGGGTGA
GGCCACCTCCTTGCTCGAGTGGGGTGACGCGGCCGCCACGCCGGCGTGCGCGTGGTGGAGCGACGTCCTCGATCAGGGCA
CGGAGGGCAGCGGTTGCGTCGGCGAGCTGTGCGCGCCGGCCGGGCAGGAAGGAGGCGACGTTGACGTGGCGAGTATGCCG
GCTGCGGGGTGGCTGTACGACGGCTCCGGCGACCAAGGAGCCACATGGAGCGGCAAGACGGT------------------
------CGGCGGCGACGACTACCACCAGCGGGACGGCGAAGACGTAGCCTTGCCATGGTAAGCCGTACACGCATGAATCA
CAGTAGAGAT-----------------------------CGAATCATTGCTGCCAAGTTCGTCATCTGCTTAAGTAGCGA
TCCGTGACTGTTCCAAAATGTGTTCAAGTGATCAGTGTTTGTTTTCGCAGTATGGAGATCGAAGGGTGGGACGGGGAGTG
GTTCTCACGAGGAGCCAATTC--CCTTGGAAAA-----------------------------------------------
------------------------------------------------------TAAGAAGCCGGGGATCGATCGTGAGA
AGCTGGAGCTGATTACTGGAGTTGGAGTTGACGCTTTATCAGTCACGGAGGGCTACCGAACACGCCCTTGCTCTCTGAAT
TCCATAATCA-TTTGGCATGAAAATCTCCGGA--CTGTTTCATTGTGCCTGAGCTTATTTTACAGGACAGTTTTCGGGCA
ATGTTTGCCCCAAAAAATTTGGGGAGAAAATCAAGCAATACCATGATTACAACGACTTTAATCCGGCTAACAGGAAATCT
CACATGGAGAATAAGTATACTATAAATCAACG-A-GGGAGGAGCAGTGCTGCCAAGTTCAGGCATGCTTACACGAACCAC
GGTTACTAGAACATGAATACAACAGCAAATCCCAGCAGCAGCACCTCTGCAAGGCTCTCTCGTCACCAAACCTAGGAAAG
AGCACCCATGAGGGGCAGACGGCGAGTT-GAAAAGTAGCAGGCCCAGGAAGGGCGAATCAT--------GGTTTATCCAA
CAATACTGTAC-TTGAATAACAATAAACATAGGCCATAGGCTACACCACATGATTCTTCGCTTGCGAAAGGAAGACTGGA
CCCTTTAACAGGGGATGTGCCTGCGATGCGATGGCGACAAATATGAACATGGCTGGGGGCTCGGAGGCTC--------TC
TTAGCTCGACTGTAAGTAATACGATGATCTTCTTAGCTCAGACCTCCATGTAATATTCAAAGAAGCCGCCTAGCTACTCC
ACTAGTCTTGTATATGCAGTTCCAGTTCCAGTTC------CATTTCATAATCAGACAACAAGGAAGTAAGCAGATCACCG
TCCCAGGTTTACTTGAAGGGGGCAAACAGAATTGATGAGTTATGCCCACCGAATCCAAATGAGTTTGACAGCGCCACCTT
TACTTCGCACCTCTCCTTCTCTGCTCCAACTAAAACGCCCACATCCTGTAGCCAAGATTGAGATCAGAACATTCATTGGA
TGAAATGAGCTCTAGTGATATATTACTGCAAAATTTGTTCATTCATATCTTAGCTTATTTAGTGCTAGCAAATA-----
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------------S--------S--S----
-------------------------S---------------------------S--S-----------------------
------------------------------S----------S---------S------S---------------------
--S--S-----S------------------------------------------SS-------S----------------
--S-------------------------S------------------S----S-----------------------S---
-------------------------------S-----------------S--------------------S----S--SS
---------------------------------------------------------S-------------S--------
------------S-------------S---------------S-------------------------------S-----
-------------------S--------S------------------------------------------S--------
----------S---SSS------------------------S-------------------------------------S
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--------------SSSS-SSS-SSS-SS---------------------------------------------------
---------------S-----------S----------S-----------------------------------------
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---------------------------------------------------------S--------S-------------
--------------------------------------------------------------------------S-----
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-------------------------------------------S------------------------------------
-----------------------------------------------------S-------S-------------S----
---------------S----------------------------------------------------------------
-S------------------------------------------------------------------------------
----------------------------------------S------------------------S-S--S---------
---------------------------------------------------------------------------S----
--------S-----------------------------------S-----------------------------------
---------------------------------S-----------------------------------S-S--------
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------------------S-----S-SS----S-------------------------------------S---------
--------------------------------SS------------------------------------S---------
---------------------SS--------S-----------------------------------------------S
----------------------------------S---S-----------------------------------------
--------------S----------------------------------------------S--------S-------S-
-----------------------S-SSSS-----S-SS-S---S----------S-S-S--SSSSSSSS--S------S-
-----------S--------------------------------------------------------------------
-----------------------S---------S----------------------------------SSSSSSSSSS--
-------S-------------------------S----------------------------------------------
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----SS--------------------------------------------------S-----------------------
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--------------------------------S----------------S------------------------SSSSS
>forward_191
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-----------GCTCCGATCAAGGTGAAGGT-------------------------------------------------
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>reverse_1435
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--------------------------------------------------------------------------AGGCCT
CAACCTCAGCTTC-------------------------------------------------------------------
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>forward_246
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------------------------------------------------------------------CACTGGTGGATCGT
GTAGCC--------------------------------------------------------------------------
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>reverse_2434
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---------------------------------ACTGTTTCAATGTGCCTGAGC--------------------------
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