>input_sequence_60804
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------TCCCTCGCCACCATGGTAGAGTATTTGTGCTCGGCATCCGATGCCCTGCCTTTCCTCTCGTCTTCCTTATCCCC
CGGCACAATATCATATTTTCGTA--------------------------CCGTGCGACCCTCTTCCTCAGCTCCCCTGTT
CCTCTCACTCTCTCTCTCT--------CGAAGCTCCGTGGCGCG----ATGCACGACTGGGCGCCGGCGATCATAGCGAC
GGCGCTGTTCGCCCTGCTGTGCCCGGGAGGGATCCTCCAGCTGCCCGGCCGGCAGCGGACGGTCGACTTCATGAACCTCA
GGACCAGCTGCTTGTCCATCCTCGTCCACGCCGTCATCTACGGGGTGCTGCTCATGCTCTTCGTCGTCATCTTGCAGGCT
CATCTCTACGTCTGATCTTACCTTATCTTAATG----TGTGT----GCTTCATGGTGCTTTTATTCTCTCTCTGCTTTTC
TTATGTACGTACTCGAGTATTCGAGTAAGGTTTAGTAAAGCTAGGATGCTCGGAGGATGCATGATTCTGTTTTCTTCGTG
CGTGTTGCTGAGCTTCCGCTCTGGTCTCAGTAATAAA-GAGCTATGAAACGGTGATTATTTCTCGGACGGATGGTTTTCC
TTCGGCCCGTTAAGATGAATTCTCATGGAGTACCGCTGTACAGTAATTCAGATGTCTATTACGGA-TTTACGGCAGGTTT
GTG--TTTTTATTTCCTTTTAACTTTTCAACCGATCGTTTGTGTATTCGAGGGAAGTTTTGGGCGTCTGATCACTG----
----TGTCAGACTGTCAGCAATCTGCTACTGAATACAGTTATCATGTTCGGAAACCAGGCAAATTAGAGGTAACTTGGCA
AGACCGCAAACAGACAACCAGGATTTAGTGTATTTTTCGAGAACATCCAGGATTTAGTCTAGTCCACAAACAACAAATGA
AAGTACAGTGCGATACTATAACTTCAAAAAAATACAGTTCGATACTATATACTTAAGTGGCTACAAAGGTTTGCATATTC
TTATATCTGGAAGGCCACTGACT--TTGGCCTTGACGACGGTGGTCACAGGGCAAGATGCATTCGACAAGACGTAGTTCG
TCACACTTGCCAGCAGAATCCTGCAGGCAAATGATAACTGTC--------------------------------------
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>chr3D_1_TraesCS3D01G357900
ATTCA-AAAAAGCGTAAACACGTTGAAAAACATGATCATCTTTTTTTTAAAATGTTCATGAAAATGAAAAAAATAATATT
CATGTTGTTTATTGAAAATGTCTGTGCCATTCAAATAATTTTTCATGACATCTAATATTTTTTGCATATTTTAAAATGTG
TCCCATGATATTTTAAAAATGTTCATGGA--ATATAAAAAATCGTGCAATTCATAAAAAAAATCAGACACATAATTTTTA
TTTCGTGCCAGTTAGAAAGATGTTCTAACACTTGACAAATCTTTGCTCGTTTTTAAAAACGTTGCTGACATTTTTGATAA
GTCTTCAAATGTGTATTTATAAATGTTTGCCATGTTCTTAAAAATGTTTGAA-----TTTACAGATGGTAAACATGTATC
AAGGTAAATATTAAAC----------------------GTGTATCTATTGTTTTTCAATATGTATATGAGAAATGTTCAA
CGCGTATATGAAAAAATAAAAAATAAAAACAAACAGAAAAAAAAATCCGAAAACA--ATGAACACCGATAGAGGAAACAC
ACAAGAAACAAATAAGCAA-AAAAAAACCCACGCGGAAGCTCGTAAAACCGGTTCGTACCTATCCATAGAACCTTCTAAA
AC--CTCCCAAGAAACTAAACCACGTAAACGCGC----------------------------------------------
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------------GTTATTGGACCGGCCAACTAGCAGAAGCGCCAGAGGTGAGAAGAGTATAGCTCTCGCGATAAGCGAGA
CATAGCTTTCGCGGGAGGACGCTAAAATCCTGCCTCAACA-GTGACGCGTGCTGAGTGGCAAAAGTCCTCT---------
-----TCAGCCCAGCAACAGTGATCCTGCTAATCTGCTCCTCTGTCTCTTCTAATCACATAGTT-----------CCACC
AGACTACTACTGTGCGTGTACTCCTGCACTGTGCTTGCATAGACGCGACAGGGTTCGACT-AGCTCACACCCAATCCGCT
TCCAAAAGCCACGTTTCGACGCCCAAAGGCGCCGATCGTGAT------GGCGCCCTTTCAATCAATCAGTCCACTGATTG
TCTGATTCCCTCGCCACCATGGTAGAGTATTTGTGCTCGGCATCCGATGCCCTGCCTTTCCTCTCGTCTTCCTTATCCCC
CGGCACAATATCATATTTTCGTA--------------------------CCGTGCGACCCTCTTCCTCAGCTCCCCTGTT
CCTCTCACTCTCTCTCTCT--------CGAAGCTCCGTGGCGCG----ATGCACGACTGGGCGCCGGCGATCATAGCGAC
GGCGCTGTTCGCCCTGCTGTGCCCGGGAGGGATCCTCCAGCTGCCCGGCCGGCAGCGGACGGTCGACTTCATGAACCTCA
GGACCAGCTGCTTGTCCATCCTCGTCCACGCCGTCATCTACGGGGTGCTGCTCATGCTCTTCGTCGTCATCTTGCAGGCT
CATCTCTACGTCTGATCTTACCTTATCTTAATG----TGTGT----GCTTCATGGTGCTTTTATTCTCTCTCTGCTTTTC
TTATGTACGTACTCGAGTATTCGAGTAAGGTTTAGTAAAGCTAGGATGCTCGGAGGATGCATGATTCTGTTTTCTTCGTG
CGTGTTGCTGAGCTTCCGCTCTGGTCTCAGTAATAAA-GAGCTATGAAACGGTGATTATTTCTCGGACGGATGGTTTTCC
TTCGGCCCGTTAAGATGAATTCTCATGGAGTACCGCTGTACAGTAATTCAGATGTCTATTACGGA-TTTACGGCAGGTTT
GTG--TTTTTATTTCCTTTTAACTTTTCAACCGATCGTTTGTGTATTCGAGGGAAGTTTTGGGCGTCTGATCACTG----
----TGTCAGACTGTCAGCAATCTGCTACTGAATACAGTTATCATGTTCGGAAACCAGGCAAATTAGAGGTAACTTGGCA
AGACCGCAAACAGACAACCAGGATTTAGTGTATTTTTCGAGAACATCCAGGATTTAGTCTAGTCCACAAACAACAAATGA
AAGTACAGTGCGATACTATAACTTCAAAAAAATACAGTTCGATACTATATACTTAAGTGGCTACAAAGGTTTGCATATTC
TTATATCTGGAAGGCCACTGACT--TTGGCCTTGACGACGGTGGTCACAGGGCAAGATGCATTCGACAAGACGTAGTTCG
TCACACTTGCCAGCAGAATCCTGCAGGCAAATGATAACTGTCAAGATGAGGAAAAGATAGCGGAAAGTATAAT-GGGGTG
GTCTGCATGTTTCATGTCCTAATGAGCATAATACCCGTCCACGTTTTCACTTTTTTGGTTAGGGTGTGTTTGGATTGTCG
TTTCCTTTCAAATATACCTCTGTAAAAAATACAGACCTCGGAGGGTCGTTTTGTTTCCGGCCGGAAACTGTTCAGCGGCC
AGTAAAATACAACTGTAAATTAAACACACCCGTATTGAAATACACTGATCCCAAGCACGGCCTTAATGGAACGCATGTTG
TGATGTAGTAGTACGTTTTAGGCTAGTCATAGTGGGAATAACTTAGCTAGTAACATAGCGCACTTCGAGAAAATTCTGCT
TATGTGACGAGTAATTAATGAGAGCAGATCATGGGGATAAAATTATTTAGAAGAACTATGCTTTGTAATATTGCTCTTAA
CATAATCCGTTTGCATGTGTGCAATACCAGCAGCATTATCTCTATAGATAACGGTGGGTGATTTCAACGAACCAATCTCA
CTTGAACTTTGGACAAAGTTCATCATTCTACGAAGCCATACACATTCACGTGATGCTTCGAACAAAGGAATTATCTCAGA
ATGATTGGTGGGAGTTGACACTAAGGTTTGGTTTGTTGACTTTCAGGAGAAGGCCGTACCACCATGTAAGAAGACAAAAC
CAGTCTGCGATCTAACATCATGGGGATCTGACAAGTGTCCATCATTGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCTTGAAGATATATATAAATATTCTTCACACCAA-CCCAATGACTTTTCATTG
ATGA------GTATCTAGCAAGTAAATCAACTGCAAATGCTATATCAGGTCTAGTGCAGTGTGCTAGATACATTAGCGCA
CCAATGGCACTGAGATATGGAAACTCTGGCCC-AATATCTCT---TCATAACCCTTAGGCCTAGATGGGTCCTTATCTCT
ATCAAGGAACCTGA
>chr3B_1
ATTCAAAAAGAATGTTAACACGTTGAAAACATGATCATGCCA--TTTCCAAATGTTCATGAAAATGTAAAAAAAAAT---
CACGTACTTTATTTAAAATGTCCGTGCCATTCAAATAATTTTTCATGACATCTAATATTTTTGCATG-TTTTAAAATGTA
TACCGTGATATTTTAGAAATGTTCATGCAATATAAAAAAAATCATGCAATTCATAAAAAAACAGACATATAAAAAATGTC
A---GTGCCAGTTAGAAAGATGTTCTAACACTTGACAAATGTTTGCTCGTTTTAAAAAATGTTATTGACATTTTTGAAAA
GACTTCAAATGTGTATTTATAAATGTTTGCTATGTTTTTATTTATTTATGTTTGCGTTTTACAAATGCTAAACATGTATT
AAGGTAAATATTAAACATGTATTTGTAAAATGCGTAATGTGTATCTATT-TTTTTCAATATGTATAGGAAAAATGTTCAA
CACATATTTG-AAAAATAAAAAATAAAAATAAACATAAAATAATTCTGAAATTTCCCATGAACACCGATAGAGGAAACAC
GCAAGAAACAAATAAAAAAGAAAAAAAGCCACGCGGAAGCTTGTAAAACCGGTTCGTACCTATCCATAGAACCTTCTCAA
ACCTCTCCCAAGAAACTAAACCACGTAAGTTTTTTTCTTGGTAATATATGTCTCATTTATATCATAAGGATCATAGTACA
AGCCACGTACATACCGACCTGACAAAACTGAAAAGACAGCAGAACACTAGCCTTTGTACATAGGAACACCAGCCAAGAAG
TAAAATTACAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACGCCCGTCACCTACCTCTGGCACCACCATAGCAGC
CACCAAAGGAGAAAATGACGGATCACCTCCACACCCGAGCTCGACGCGGCTTTATCCCAGCCCAACTAAGACGTTGGAGG
AGGAAACCATACCTGCCTGCCATGAACCATGAACCCAGATCCACCATCTTCCAGACGTCGTCGATGCAGACCACAATCTG
CATCTGCTTCTGGACTACCTCCCAAGCTCCACGCCGGCGCTGGAGCAAACGCCGTCGCAAAGGCGGAGCCCGAGGACACA
GGTCCACCACGAGAATGCCGCCGCCGCCGCACCATCCTTGCTTGAACAGTCTGGTTTCCAAATCCACCCCAAAAACGGAT
CGCCTAGTTGGGAAAAGATCTGAAGATTTATTAGTCGACGCCGCCATCGCCATTGCCGAAGCCATGACGATGAACAACCC
AAAAACCTAAAAAACTAATGCCTAAAACAATCAACGCGCGTGGAAAACGACGGCGCAGGAAGGCGCCCTAGCTGCAGGAG
GCGAGATCGCCTTTCTTTCTTCTCTTGAAGAAAGAAAGCGCACGGGATTTCTAGATCATAATTATCCCTTCAACTAAACC
ACGTAAGTGAATGTTATTGGAAAGGCCTACTAGCAGAACCGCCAGAGGCGTAATTGAGG---------------------
CATAGCTTTCGCGGGAGGACGCTAAAATCCTGCCTCAACACGTGACGCGTGCTGAGTGGCAACAGTCCTCT---------
-----T--------------TGATCCCGTTAGTCTGCTCGGCTGTCTCTTCCAATCACATGGTT-----------CCAC-
----------TGTGCGAGTACTTCTGTACTGTGCTTGCATAGACGCGACAGGAG--GACT-AGCTCACACCTAATCCGCT
TCCAAAAGACACGTTTCGACGCCCAAAGGCGCCGATCATGAT------G-CGCCCTTTCAATCAATCAGCCCAC------
--TGATTCCCTCGCCACTATGGTAGAGTATTTGCGCTCGGCATCCGATGCCCTACCTTTCCTCTCGTCTTCCTTATCCCC
CGGCACAATATCATACGAAACTGCTCTGCTCTGCGTCGAATATCATACTCCGTGTGACCCTCTTCCTCGGCTCCCCTGTT
CCTCTT----------TCTCTCTCTCCCGAAGCTCCGTGGCGCGCGCGATGCATGACTGGGCGCCGGCGATCATAGCAAC
GGCGCTCTTCGCCCTGCTGTGCCCGGGAGGGATCCTCCAGCTGCCCGGCCGGCAGCGGACGGTCGACTTCATGAACCTCA
GGACCAGCTGCTTGTCCATCCTCGTCCACGCCGTCATCTACGCTGTGCTGCTCATGCTCTTCGTCGTCATCTTGCAGGCT
CATCTCTACGTCTGATCTTACCTTATCTTACTTACTGTGTGTGCGCGCTTCATGGTGCTTTTGTTCTCTCTCTGCTTTTC
TTATGT----ACTCGAGTATTCGAGCTTGGTTTAGAAAAACTAGGATGCTCGGAGGATGCATGATTCTGTTTTCTTCGTG
CGTGTTGCTGAGCTTCCGCTTTGCTCTTAGTAATAAAAGAGCTATGAAACGGTGATTATTTTTCAGACGGATGATTTTCT
TTCGGCCTGTTAAGATGAATCCCCATGGAGTACCACTGCATAGTAATTCAGACGTCCATTACGCA-TTTACAGTAGGTTT
GTGTTTTTTTATTTCTTTTTAACTTTTCGACCGAACGTATGTGTATTCGAGGGAACCTGTGGGTGTCCGATCACTGATTC
ACTGTGTCAGAGTGTCAGTTATCTGCTACCGAATACAGTTATCAAGTTCAGAAACCGGGCAAATTAGAGGTAACTTGGCA
AGACTGCAAACA-----------------------------AACATCCAGGATTTAGTCTAGTCCACAAACAACAAATGA
AAGTACAGTGCGATACTATAACTTGAAAAGAAACTACAGTGCG-----ATACTTAAGTGGCTTCAAAGGTTTACATATTC
TTATATCTGGAAGGCCACTGACTATTTTGCCTTGACGACGGTCA--ACAGGGCAAGATGCATTCGACAAGACATAGTTCG
TCACACTTCCCAGCAGAATCCTGCAGGCAAATGATAACTGTCAAGATGAGGAACAGATAGCGGAAAGTATAAT-GGGGTG
GTCTGCATGTTTCATGTCCTAACGAGCATAATGCCCATCCACGTTTTCACTTTTTTGGTTA-------------------
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>chr3A_682
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------------------------------------------------------GAGTATAGCTGTCGCAATAATCAA-A
CATAGCTTTTGCGGGAGGACGCTAAAATCCTGTCTCAACACGTGACGCGTGCTGAATGGCAGAAGTCCTCTTCATCCCAG
CAACAT--------------TGATCCCGTTAATCCGTTCGGCTGTCTCTTCCAATCACACAGTTCCAGCAGACTACCAC-
----------TGTGCGAGTACTCCTGCACTGTGCTTGCACAGACTCGACAGGAG--TACTAAGCTCACACCTAATCCGCT
TCCAAAAGCCACGTTTCGACGCCCAAAGGCGCCGATCATATCATGACGG-CGCCCTTTCAATCAATCAGCCCAG------
--TGATTCCCTCGCCACCATGGTAGAGTATTTGCGCTCGGCATCCGATGCCCTGCCTTTCCTCTCGTCTTCCTTATCCCC
CGGCACAATATCATATTTTCGTA--------------------------CCGTGTCACCCTCTTCCTCAGCTCCCCTGTT
CCTCTC----------TCT--------CGAAGCTCCGTGGCGCG----ATGCACGACTGGGCGCCGGCGATCATAGCGAC
GGCGCTGTTCGCCCTGCTGTGCCCGGGAGGGATCCTGCAGCTGCCCGGCCGGCAGCGGACGGTCGACTTCATGAACCTCA
GGACCAGCTGCCTGTCCATCCTCGTCCACGCCGTCATCTACGCCGTGCTGCTCATGCTCTTCGTCGTCATCTTGCAGGCT
CATCTCTACGTCTGATCTTACCTTATCTTAGTTACTATGTGT----GCTTCATGGTGCCTTTGTTCTCTCTCTGCTTTTC
TTATGT----ACTCGAGTGTTCGAGCTTGGTTTAGTGAAACTAGGATGCTCCGAGGATGCATGATTATGTTTTCTTCGTG
CGTGTTGCTGAGCTTCCGCTTTCGTCTCAGTAATAAA-GAGCTATGAAACGGTGATTATTTTTCGGTCGGATGGTTTTCT
TTCGGCCGGTTAAGATGAATTCTCATGGAGTACCACTGTATAGTAATTC---TGTCTATTA-------------------
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>chr3A_1643
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-------------------------------------------------------CTCTTACGGATTTTACGGTAGGTTT
GTG--TTTTTATTTCCTTTTAACTTT-CGACCGATCGTGTGTGTATTCGAGGGAAACTGTGGGTGTCTCATCACTG----
----TGTCAGACTGTCAGTAATCTGCGAGCGAATACAGTTATCATGTTCAGAAACCAGGCAAATTAGAGGTAACTTGGCA
AGACTGGAAACA-----------------------------GACATCCAGGATTTAGTCTAGTCCACAAACAACAAATGA
AGGTACAGTGCGATACTATAACTTGAAAAGAAATTACAGTGCG-----ATACTTAAGTGGCT---AAGGTTTAAATATTC
TTATATCTGGAAGGCCACTGACTATTTTCCCCT---GACGACGGTCACAGGGCAAGATGCGTTCGACAACACGTAGTTCG
TCACACTTCCTAGGAGAACCCTGTAGGCAAATGATAACTGTCAAGATGAGGAAAAGATAGCGGAAAGTATAATCGGGGTG
GTCTGCATGTTTCATGTCCTAATGAGCATAATGCCCGTCCACGTTTTCACCTTTCTCGTTA-------------------
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>chr3D_2477
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-----------------------GCAGATCATGGGGATAAAATAATTTAGAAGAAATATGCTTTGTAATATTTCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGCAACATTATCTTCATAGATAATGGTGGGTGATTTCAACGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGCAAAGCCATACAGATTCACGTGATGCTTTGAACAAAGCAATTATCTCAGA
ATGACTGGTGTACGTTGCCACTAAGGTTTGCTTTGTTGACTTCCAAGAGAAGGATGCACCTCCATGTAAGAAGACAAAAC
CAGTCTGTGATCTGGCTTCATGGGGATCTGACAAGTATCCAGCATCGCAATACCTCACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATCTGAAAATATTCTTCACACCAA-CCCAATGCCTTTTCCTTG
GTGATGCGCTGTATCTAGCCAGCAAATTAACTACCAATGCTATGTCAGGTCTAGTGCAGTTTGTTGCATACATTAGTGCA
CCAATGGCACTGAGATATGGAAACTCTGGTCCCAATATCTCTTCATCACCACCCTTAGGCCTAAATGGGTCTTTATCTCT
ATCAAG--------
>chr4D_2477
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-----------------------GCAGATCATGGGGATAAAATAATTTAGGAGAAATATGCTTTGTAATATTGCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGTAGCATTATCTTCATAGATAATGGTGGGTGATTTCAACGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGTGAAGCCATACACATTCACGTGATGCTTCGAACAAAGCAATTATCTCAGA
ATGATTGGTGGACGTTGCCACTAAGATTTGCTTTGTTGACTTCCAAGAGAAGGCCGTACCTCCATGTAAGAAGACAAAAC
CAGTCTGCGATCTGACATCATGGGGATCTGATAAATATCCAGCATCGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TAATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATCTG-AAATATTCTTCACACCAA-CCCAATGCCTTTTCGTTG
GTGATGCGATGTATCTAGCCAGTAAATTAACTGCAAATGCTATGCCAGGCCCGGTGCAGTTCGCTAG--ACATTAGTGCT
TCAATAGCACTGAGATATGGAAACTCTGGTCCCAATATCTCTTCATCATCACCTTTAGGCCTAAATGGGTCTTTATCTCT
ATAAAG--------
>chr5D_2477
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-----------------------GCAGATCATGGGGATAAAATAATTTAGGAGAAATATGCTTTGTAATATTGCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGCAGCATTATCTTCATAGATAATAGTGGGTGATTTCAATGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGCGAAGCCATACACATTCACGTGTTGCTTCGAACAAAGCAATTATCTCAGA
ATGATTGGTGGACATTGCCACTAAGGTTTGCTTTGTTGACTTCCAAGAGAAGGCCGTACCTCCGTGTAAGAAGACAAAAC
CAGTCTGCGATCTGGCATCATGGGGATCTGACAAGTATCCGGCATCGCAATACCCTACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATCTAAAAATATCCGTCACACCAA-CCCAATGCCTTTTCGTTG
GTGATGCGCTGTATCTAGCTAGTAAATTAACTGCAAATGCTATGTCAGGCCTGGTGCAGTTTGCTAAATACAGTAGTGCT
CCAATAGCACTGAGGTAAGGAAACTCAGGTCCTAATACCTCTTCATCATCACCCTTAGGTCTAAATGGGTCTTTATCTCT
ATCAAG--------
>chr1B_2477
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-----------------------GCAGATCATGCGGATAAAATAATTTAGGAGAAATATGCTTTGTAATATTGCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGCAGCATTATCTTCATAGATAATGGTGGGTGATTTCAACGAATCAATCCCA
CTTAAACTTTGGACAAAGTTCATCATTCTGCGAAGACATACACATTCTCGTGTTGCTTCGAACAGAGCAATTATCTCAGA
ATGATTGGTGGACGTTTCCACTAAGATTTGCTTTGTTGACTTCCAAGAGAAGGCCGTACCTCCATGCAAGAAGACAAAAC
CAGTCTGCGATCTGGCATCATGGGGATCTGACAAGTATCCAACATCGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATATGAAAATATTCTTCACACC-A-CCCAATGCCTTTTCGTTG
GTGATGCACTGTATCTAACCAGTAAATTAACTGCAAATGCTATGTCAGACCTAATGCAGTTCGCTAGATACATTAGTGCT
CCAATAGCACTGAGGTAAGGAAACTCAGGTCCTAATACCTCTTCATCATCACCCTTAGGTCTAAATGGGTCTTTATCTCT
ATCAA---------
>chr2A_2477
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-----------------------GCTGATCATGGGGATAAAATAATTTAGGAGAAATATGCTTCGTAATATTGCTCTTAA
TATAACCTGTTTGCATTTGTGCAATACAAGCAGCATTATCTTCATAGATAATGGTGGGTGATTTTAACGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGTGAAGCCATACACATTCTCGTGTTGCTTCGAACAAAGCAATTATCTCAGA
ATGATTGGTGGACGTTGCCACTAAGGTTTGCTTTGTTGACTTCCAAGAGAAGGCCGTACCTCCATGTAAGAAGACAAAAC
CAGTCTGCGATTTGGCATCATGGGGATCTGATAAGTATCCAGCATCGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATCTGAAAATATTCTTCACACC-AACCCAATGCCGTTTTGTTG
GTGATGCGCTGTATCTAGCCAGTAAATTAACTGCAAATGCTATGTCAGGCCTGGTGCAGTTCGCTAGATACATTAGTGCT
CCAATAGCACTGAGGTAAGGAAACTCATGTCCTAATACCTCTTCATCATCACCCTTAGGTCTGAATGGGTCTTTATCTCT
TTCAAG--------
>chr3B_2478
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------------------------CAGATCATGGGGATAAAATAATTTAGAAGAAATATGCTTTGTAATATCGGTCTTAA
CATAACCCGTTTGCATGTGTGCAATACAAGCAGCATTATCTTCATAGATAACGGTGGGTGATTTCAACAAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATTATTCTACGAAACAATACACATTCATGTGATGCTTCGAACAAAGCACTTATCTCAGA
ATGATTGGTAGGCATTACCACTAAAGTTTGCTTTGTTGACTTCCAAGAGAATGTCGTACCACCATGTAAGAAGACAAAAC
CAGTCTGCGGCCTGACATCATGGGGATTTGACAAGTATCCAACATTGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TAATAGAATAAACCAAGATCTTTGGTGC-TTGAAGATAGCTACAAATATTCTTCACACC-AACCCAATGACTTTTCTTTG
GTGATGCATTGTATCTAGCCAGTAAATTAATTGCAAATGCCATATCAGGTCTAGTGCAGCTTGCTAGATACATTAGTGCA
ACAATGGCACCGAGATATGGAAACTCTGGTCCCAATATGTCCTCATCATCACCCTTAGACCTAAATGGGTCCTTATCTCT
ATCAAGAAACCTGA
>chr3A_2479
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-------------------------AGATCATGGGGATAAAATAATTTAGGAGAAATATGCTTTGTAATATTGCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGCAGCATTATCTTCATAGATAATGGTGGGTGATTTCAAAGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGTGAAGCCATACACATTCACGTGATGCTTCGAACAAAGCAATTATCTCAGA
ATGATTGGTGGACGTTGCCACTAAGGTTTGCTTTGTTGACTTCCAAGAAAAGGCCGTACCTCCATGTAAGAAGACAAAAC
CAGTCTGCGATTTGGCATCATGGGGATCTGACAAGTATCCAGCATCGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TTATAGAATAAACCAAGATCTTTGATGCCCTGAAGATATCTGAAAATATTCTTCACATC-AACCCAATGCCTTTTCGTTG
GTGATGCACTGTATCTAGCCAGTAAATTAACTGCAAATGCTATGTCAGGCCTGGTGCAGTTTGCTAGATACATTAATGCT
CCAATAGCACTGAGGTAAGGAAACTCAGGTCCTAATACCTCTTCATCATCACCCTTAGGCCTAAATGGGTCTTTATCTCT
TTCAAG--------
>chr5B_2479
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-------------------------AGATCATGGGGATAAAATAATTTAGGAGAAATATGCTTCGTAATATTGCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGCAGCATTATCTTCATAGATAATGGTGGGTGATTTTAACGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGCAAAGCCATACACATTCTCGTGTTGCTTCAAACAAAGCAATTATCTCAGA
ATGATTGGTGGATGTTGCCACTAAGGTTTGCTTTGTTGACTTCCAAGAGAAGGTCGTACCTCCATGTAAGAAGACAAAAC
CAGTCTGCGATCTGGCATCATGGAGATCTGACAAGTATCCAGCATCGCTATACCCCACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATCTGAAAATATTCTTCACACC-AACCCAATGCCGTTTCGTTG
GTGATGCACTGTATCTAGCCAGTAAATTAACTGCAAATGCTATGTCAGGCCTGGTGCAGTTCGCTAGATACATTAGTGCT
CCAATAGCACTGAGGTAAGGAAACTCAGGTCCTAATACCTCTTCATCATCATCCTTAGGTCTAAATGGGTCTTTATCTCT
TTCAAG--------
>chr2D_2480
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--------------------------GATCATGGGGATAAAATAATTTAGGAGAAATATGCTTCGTAATATTGCTCTTAA
TATAACCCGTTTGCATTTGTGCAATACAAGCAGCATTATCTTCATAGATAATGGTGGGTGATTTTAACGAACCAATCCCA
CTTGAACTTTGGACAAAGTTCATCATTCTGCGAAGCCATACACATTCTCGTGTTGCTTCGAACAAAGCAATTATCTCAGA
ATGATTGGTGGACGTTGCCACTAAGGTTTGCTTTGTTGACTTCCAAGAGAAGGCCGTACCTCCATGTAAGAAGACAAAAC
CAGTCTGCGATCTGGCGTCATGGGGATCTGACAAGTATCCAGCATCGCAATACCCCACCATGGTTCTCTCTTGATTTTTC
TGATAGAATAAACCAAGATCTTTGGTGCCCTGAAGATATCTGAAAATATTCTTCACACC-AACCTAATGCCTTTTCGTTG
GTGATGCACTGTATCTAGCCAGTAAATTAACTGCAAATGCTATGTCAGGCCTGGTACAGTTTGCTAGATACATTAGTGCT
CCAATAGCACTGAGGTAAGGAAACTCAGGTCCTAATACCTCTTCATCATCACCCTTAGGCCTAAATGGGTCTTTATCTCT
TTCAAG--------
>SNPs
---------S-SS--S-------------SSSSSSSSSS-SSSS---SS-----------------S------S---SSS
--S--SS------S--------S---------------------------------------SSSSSS-----------S
-S--S----------S-----------S------S--------S-----------------SSS-S-S-S-S--SS-S-S
SSSS------------------------------------S------------S-----S---SS------------S--
-S----------------------------S-----S---SSS--S-S--SS-----------S---S-----------S
-------------------------------------------------S----------------S--S----------
-S-S---S--S------------------S-----S----S--SSSSSS--SSSS-------------------------
S--------------SS----------S-------------S-----------------------------------S--
----------------------------SSSSSS----------------------------------------------
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---------------------SS----S----------S---------S-SS-S----------S----S----S-S-S-
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------SSSSSSSSSSSSSS------S-S----------SS----------S---------------------------S
SSSSSSSSSS------S-----------------------------------SSSS---------------S--------
-------------------------------------S-----------S-------------------S----SSSSSS
SS-------------------------------S----------------------------------------------
------------------------------------------------------S-------------------------
------SSSSSSSSSS----------------------------------------------------------------
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------------------------------------------SS------------------------------------
------------------------------S-S-----------------------------S-----------------
------SSSS---------------SSS-----------S----------------------------------------
--------------------S----------------------------------------S-----------------S
-------S--------------------------S-----S--------------------------------S------
----------------------------S---------S----------------SS-S----S----------------
------------------S----------S-------------------S------------------------------
----S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
------------------------S----S--SSS-SSSS-SSSSSSS--------------S---------S-------
---------------------------S----------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------S----------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------S-----------S------------------------
-----S---------------------S-------------SS----------------------------------S--
-------------------------------------------------------------------S------------
------------S----S------------S-----------S--S----------------------------------
-------------S----------------------S----S--------------------------------------
------------------------------------------S---------------------------------S---
S------------------S-------S--------------------------------S---------------S---
-----------------------------S-------------------S-------------S----------------
------S-------
>forward_1615
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---------------------------------------------------------------------------AAAGT
CCTCTTCAGCCCAGC-----------------------------------------------------------------
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>reverse_3258
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---------------------------------------------------------CGGCCTTAATGGAACGCATG---
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