>input_sequence_60756
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------------------------------ATGCTTCACTCACAAGTCACAGCTCTCACAAGAGAACAATGCCAAT----
-----------GCCATGCATTGCAAAGAAGCTCTGCTTTGCGCGTCGCCATCATGCTCGCTTTTGCTCCTCCAACAAAAA
TGTCCCCATGCTGTCCGCTCCTTCTAT---TTCCAGCAATGACGACCGCTGGCCTGAGTCGCGAGGCTTTGG------TG
CTGCTGATGCTCGCCGCGGCCGTTGTCGCGCTCGCGTGGCCATGCAGCGCGCTGCAGCTGCAGGACGCCGCCCTCATCGA
CGACGTCATCATGGAGGCCGCGGAGGAGTGCTACAACGGGAAGCACCGGCGGACGGGCGTCACGTACCCGCTCTCGCTCC
CGGGAAGCCTGTCCGCCGTCGATGGCAGCGTGGCGCGGTTCCGCTCCGGCAGCCTCAGGCGGCACGGCGTCCGTCTGTTC
GGCGAGTTCTCCGTGCCCCCGGGGCTCGTCGTGCCCGCTCG---TGCCAGCGCGCACCTCCTCGCCGTCCGCGTCAACAT
GGGGAACCTCTCGGCCGTCTATGACGAGTACGCGGCGAGAGGCGGCGGCTACCGCATCGCGTCGCCGGTGCTCGGGCTCA
TGTTCTACGGCCTGGAGCCGCGCAACGGCACGGCGCCGCTCGAGGTCCGCGTGACGGGCGCGGCCATCCGCGTCAACTTC
TCGATGGCGGTCCCAGCGCTCCAGCCAGGGGTCGTGCCGCTCTGCATGGCGGTGTGGCTAAACGGCAGCGTCACCGTGAC
GGACGTTCAGGCCGGGAGCAACACCTGCCACCTGAGGGACCAAGGGCACGTCGCGCTCGTCCTGGGCGGCGTAGGCGACG
GCGATGCGGTGGTGGAGGACGGGGAAGTGAGCAAGTGGAAGCTGGCATTGTTCGGCGCGGCGCTCGGCGCGGGCGGCACG
GTGCTACTGGGGCTGGTCCTCGTGGCGATGTTGAGCGTCCAGCGGCGCAAATCGGAGATGGCGGAGATGGAGCGGCGGGC
GTACGAGGAGGAAGCGCTGCGCGTGGCCATGGTCGGCCACGTCCGTGCGCCGTCGGCGTGTGGGTCGCGCACCACGCCGG
ACGAGCTGGAGAACGAGCATCGTGCCACCTTGTGA---------------------------------------------
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--
>chr2D_1_TraesCS2D01G393000
GGGCCCTCAATTATACGGCTATATGGATCGAGCAGACAGTTAGTGGACAAGCGAGGAGGCAAGCCTAATGCTGCCCTGAG
CACGCCGATGCCCGCGCAATCATTTCAGCCAGATCAAATGGCTGGGAAGAAG--AAATAACTCCCTCCTCCAGAGGCCCC
GTGGCACTCCTCCAAGTCCAAGTGGACCAATTCACTGAAGCTGGCAACAAGACTTGCAGACACTGTATGTGCGCAGAAGA
TTTTCCATTTTCAGCTCAGAACCAAAAGTGTTGT---------AAGAAGCGAGAGCTCTGAATCTTGGGACCAACGA---
----GAATTTTCAGTGACCTT-GTACGTCAGCAGTACCGCAGTAGACAGTAGTAGTACGTATTGTAAGACACACTTATGC
AGGTAGGTCATGTGTAAGGATAATTGCATCCGGCAATGAATTCAATCAATTGCAAGGAGGTGCGTGGTCTATGCAGAGCG
AAAATCATAAGCAATGCCTTAAAACGACCAATCTGCATGAGATCCATAGTAGCTAATCTCTGCTTGGCACGGCACTCTGT
CACAGAATGTTCTGATGAAGAAC---ATACTATGTTCTTTCGTCTGTCA-------------------------------
-------------CTCTCTCAGAAATCAGAACGTTCCATTGCACACACAGGCACATAGCGCAAAGATGATCACGCTGTTG
CACGGAGGAGTGCCGGTACAGTTTCCTAGAAAAGGCCTCTTTTGTTCTTTGACAAACGGCAGAGCTTGCTAGACCGGCAT
GAATGGCTACTCCTTTGGAGAGGCCAAGAACCTTCGTCACCAACCCATGTCTCGCAAGTGGCAAAGCTTTCCTGCCCCCT
CATCACCGGGGCTAATCAACAGCCCTACAAGGCGCCTGTCGACTGTCCCACCCAATTAACACCGCTCCCCTACGTACATT
TCCGCCCGTTACACGTAATAATACACCGCACCATTCTACCACCACCATCATCATCCTCCCCATCGACTTTGATCGGGCGT
CC----TAGCCATGTTGTTACCTCGTGCCCATGCTTCACTCACAAGTCACAGCTCTCACAAGAGAACAATGCCAAT----
-----------GCCATGCATTGCAAAGAAGCTCTGCTTTGCGCGTCGCCATCATGCTCGCTTTTGCTCCTCCAACAAAAA
TGTCCCCATGCTGTCCGCTCCTTCTAT---TTCCAGCAATGACGACCGCTGGCCTGAGTCGCGAGGCTTTGG------TG
CTGCTGATGCTCGCCGCGGCCGTTGTCGCGCTCGCGTGGCCATGCAGCGCGCTGCAGCTGCAGGACGCCGCCCTCATCGA
CGACGTCATCATGGAGGCCGCGGAGGAGTGCTACAACGGGAAGCACCGGCGGACGGGCGTCACGTACCCGCTCTCGCTCC
CGGGAAGCCTGTCCGCCGTCGATGGCAGCGTGGCGCGGTTCCGCTCCGGCAGCCTCAGGCGGCACGGCGTCCGTCTGTTC
GGCGAGTTCTCCGTGCCCCCGGGGCTCGTCGTGCCCGCTCG---TGCCAGCGCGCACCTCCTCGCCGTCCGCGTCAACAT
GGGGAACCTCTCGGCCGTCTATGACGAGTACGCGGCGAGAGGCGGCGGCTACCGCATCGCGTCGCCGGTGCTCGGGCTCA
TGTTCTACGGCCTGGAGCCGCGCAACGGCACGGCGCCGCTCGAGGTCCGCGTGACGGGCGCGGCCATCCGCGTCAACTTC
TCGATGGCGGTCCCAGCGCTCCAGCCAGGGGTCGTGCCGCTCTGCATGGCGGTGTGGCTAAACGGCAGCGTCACCGTGAC
GGACGTTCAGGCCGGGAGCAACACCTGCCACCTGAGGGACCAAGGGCACGTCGCGCTCGTCCTGGGCGGCGTAGGCGACG
GCGATGCGGTGGTGGAGGACGGGGAAGTGAGCAAGTGGAAGCTGGCATTGTTCGGCGCGGCGCTCGGCGCGGGCGGCACG
GTGCTACTGGGGCTGGTCCTCGTGGCGATGTTGAGCGTCCAGCGGCGCAAATCGGAGATGGCGGAGATGGAGCGGCGGGC
GTACGAGGAGGAAGCGCTGCGCGTGGCCATGGTCGGCCACGTCCGTGCGCCGTCGGCGTGTGGGTCGCGCACCACGCCGG
ACGAGCTGGAGAACGAGCATCGTGCCACCTTGTGACAGAAAGAAGTGCACATTTGGAACAAAGGAATACTAGTATTTGAA
TTTTTATTCTACA--ATTCTTTATG---TATGTTATAATACTTTATTTATTACGAAAAATAATCGATGTAAACTGTGAAG
TA--GTTGTAACTTGATCCAGAGATGCATGATACTACGTACGTCGTTCATTTTAGTTACATTGTTAGGCGGGGTTGATAA
TTTTCTCTACTCCTATAAAAAAAACTCAGTTGGTGATTATGGTGTGCCTACCATCTGTCATTTCTGACCATCAGATCTGC
ATCTAACGACTCTGAGGTAAGTTATGATGTTTTTGCAACAAGACTCCTCTTCTCTGCTCCAATTTGCAGAAAACCCATGG
TGAGTAATGGTGTCGTCGGGTTTTCGCTCCATGGTGAGTAATCTCGATGGCAAGTGCTCATGGTGGGTTTCCCGGCGATG
CTTGAACCCGCTTTCCTCTTTCCCGTCTTATTTTTCTGGACATGGTTGTATTTCCGTTATGTCACAGTAATGGAAAGGGG
TTATGCCCGGTTCAATTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGAAACAGCCACCTAATATTTGAGTGTCAAAGCTAAATTGTTTTTCTTTGTAGTTTGTGAACATGCATTATTCT
ATTTTGAATCCGTTGCAACACGTGGGCACATTACTAGTATCCTCTAAATTTCGTTGTAACCTGCTTTTGGTCTATCACTC
TA
>chr2B_1
GGGCCCTCAATTATACCGCCATATGGATCGAGGAGACAGTTCGTGGA------------CAAGCCTAATGCTGCCCTGAG
CACGCCGATGGCCGCGCAATCATCTCAGCCCGATCAAATTTGCTCGGAAGCACAAAAGAACTCGATGCTGCAGAGGCCCC
GTGTCCTCCCTCCTCC-------GGACGAAGTCACTGAAGCTGTCAACAAAACCTGCATATACTGTATGTGTGCAGTAGA
TTTTCCAGA------TCAGAACCAAAAGGGTTCTGAATATCACAAGAGGCGAGTGCTGAATCTCTTGGGATCATCGGCTC
TGATGAATTTTCAGCGACCTTTGTACCTCAGGTGTGCCGCAGAGGACAGTAGTAGTACTACGTAC---------------
------------TGTAAGGATAACTGCATCCGACAATCAATTCAATCAATTGCAAGGA----CGTGGTATATCTAGAGCA
AAAATCATAAGCAATGCCTTAGAAATGACCAACC--------------------AATCTCTGCTTGGCCCGGCACTCTGC
CAGACGATATTCTGAATGAAGAACATATACTCTGTTCTTTCGGCTGTCACTCCTGTCAGGCAGACAACCTGTGGCAGGTT
ACTTCCTATCTTTCTCTCTCAGAAATCAGAACGTTCCATTGCACACATAGGTACATAGCGCAGAGATGATCACGCTATTG
CACGGAGGAGTGCCGGTACAGTTTCCTAGAAAAGGCCTCTTTTGTTCTTTGACAAACGGCAGAGCTCGCTAGACCGGCAT
GAATGGCTACTCCTTTGGAGAGGCCAAGAACCTTCGTCACCAACCCATGTCTCGTAAGTGGCAAAGCTTTCCTGCCCCCT
CATCACCGGGGCTAATCAACAGCCTTACAAGGCGCCTGTCGACTGTCCCACCGAATTAGCACCGCTCCCCTACGTACATT
TGCGCCCGTTGCACGTAATAATACACCGCACCATTCTACCACTACCATCATCATCGTCCCCATCGACTTTGATCGGGCGT
CC----TAGCCATGTTGTTACCTCGTGCCCATGCTTCACTCGCAAGTCACAGCTCCCACAAGAGAACGATGCCAACGGGT
CTGCTCCCGACGCCATGCATTGCAAAGAAGCTCTGCTTTGCGCGTCGCCATCATGCCCGCTTTTGCTCCTCCAACAAAAA
TGTCCCCATGCTGTCCGCTCCTTCTAT---TTCCAGCAATGACGACCGCTGGCCTGAGTCGCGAGGCTCTCG------TG
CTGCTGATGCTCGCCGCGGCCATTGTCGCGCTCGCGTGGCCATGCAGCGCGCTGCAGCTGCAGGACGCCGCCCTCATCGA
CGACGTCATCATGGAGGCCGCCGAGGAGTGCTACAACGGGAAGCACCGGCGGACGGGCGTCACGTACCCGCTCTCGCTCC
CGGGCAGCCTGTCCGCCGTCGATGGCAGCGTGTCGCGGTTCCGCTCCGGCAGCCTCAGGCGGCACGGCGTCCGTCTCTTC
GGCGAGTTCTCCGTGCCCCCGGGACTCGTCGTGCCCGGCCG---TGCCAGCGCGCACCTCCTCGCCGTTCGCGTCAACAT
GGGCAACCTCTCGGCCGTCTATGACGAGTACGCGGCGAGAGGCGGCGGGTACCGCATCGTGTCGCCGGTGCTCGGGCTCA
TGTTCTACGGCCTGGAGCCGCGCAACGGCACGGCGCCGCTCGAGGCCCGGGTGACGGGCGCGGCCATCCGCGTCAACTTC
TCGATGGCGGTCCCGGCGCTCCAGCCAGGGGTCGTGCCGCTCTGCATGGCGGTGTGGCTGAACGGCAGCGTCGCCGTGAC
GGACGTGCAGGCCGGGAGCAACACCTGCCACCTGAGGGACCAAGGGCACGTCGCGCTCGTCCTGGGCGGCGTAGGCGACG
GCGATGCGGTGGTGGAGGACGGGGAAGTGAGCAAGTGGAAGCTGGCATTGTTCGGCGCGGCGCTGGGCGCGGGCGGCACG
GTGCTGCTGGGGCTGGTCCTCGTGGCGATGTTGAGCGTCCAGCGGCGCAAATCGGAGATGGCGGAGATGGAGCGGCGGGC
GTACGAGGAGGAGGCGCTGCGCGTGGCCATGGTCGGCCACGTCCGTGCGCCGTCGGCGTGTGGGTCGCGCACCACGCCGG
ACGAGCTGGAGAACGAGTATCGTGCCACGTTGTGACAGAAACAAGTGCACATTTGTAACAAAGGAATAGTAGTATTTGGA
TTTTTATTCTACAATATTCTTTATG---TATGTTATAATACTTTATTTATTAGAAAAAATAATCGATGTAAACTGTGAAG
TATAGTTGTAACTTGATCCAGAGATGCATGATACTACCTACGT-------------------------------------
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>chr2A_588
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-------------CTCTCTCGGAAATCAGAACGTTCCATTGCACACATAGGTACATAGCGCAAAGATGATCACGCTGT--
-----------GCCGGTAGAGTTTCCTAGAAAAGGCCTCTTTTGTTCTTTGACAAACGGCAGAGCTCGCTACACCGGCAT
GAATGGCTACTCCTTTGGAGAGGCCAAGAACCTTGGTCACCAACCCATGTCTCGCAAGTGGCAACGCTTTCCTGCCCCCT
CATCACCGGGGCTAATCAACAGCCCTACAAGGCGCGTGTCGACTGTCCCACCGAATTGACACCGCTCCCCTGCGTACATT
TTCGCCCGTTGCACGTAATAATACACCGCACC--------------ATCATCATCCTCCCCATCGACTTTGATCGGGCGT
CCTTCCTAGCCATGTTGTTACCTCGTGCCCATGCTTCACTCGCAAGCCACAGCTCCCACAAGAGAACAATGCCAACGGGC
CTGCTCTCGACGCCATGCATTGCAAAGAAGCTCTGCTTTGCGCGTCGCCATCATGCTCGCTTTCGCCCCTCCAACAAAAA
TGTCCCCATGCTGCCCGCTCCTCCTATTATTTCCAGCAATGCCGACCGCCGGCCTGAGTCGCGAGGCTCTCCCCGTGCTG
CTGCTGATGCTCGCCGCGGCCGTTGTCGCGCTCGCGTGGCCGTGCGGCGCGCTGCAGCTGCAGGACGCCGCCCTCATCGA
CGACGTCATCATGGAGGCCGCGGAGGAGTGCTACAACGGGAAGCACCGGCGGACGGGCGTCACGTACCCGCTCTCGCTCC
CGGCCAGCCTGTCCGCCGTCGACGGCAGCGTGTCGCGGTTCCGCTCCGGCAGCCTCAGCCGGCACGGCGTCCGTCTCTTC
GGCGAGTTCTCCGTGCCCCGGGGGCTCGTCGTGCCCGGCCGTGCTGCCGGCGCGCACCTCCTCGCCGTCCGCGTCAATAT
GGGCAACCTCTCGGCCGTCTACGACGAGCACGCGGCGAGAGGCGGCGGCTACCGCATCGCGTCGCCGGTGCTCGGGCTCA
TGTTCTACGGCCTGGACCCGCGCGACGGCACGGCGCCGCTCCAGGTCCGCGTCACGGGCGCGGCCATCCGCGTCAACTTC
TCCATGGCGGTCCCGGCGCTCCAGCCAGGGGCCGTGCCGCTCTGCATGGCGGTGTGGCTCAACGGCAGCGTCGCCGTGAC
GGACGTGCAGGCCGGGACCAACACCTGCCACCTGAGGGACCAAGGCCACGTCGCGCTCGTCCTGGGCGGCGTAGGCGACG
GCGACGCGGTGGCGGAGGACGGGGAGGTGAGCAAGTGGAAGCTGGCGTTGTTCGGCGCGGCGCTGGGCGCGGGCGGCACG
GTGCTGCTGGGGCTCGTCCTCGTCGCGATGCTGAGCGTCCAGCGGCGCAAATCGGAGATGGCGGAGATGGAGCGGCGGGC
GTACGAGGAGGAGGCGCTGCGCGTGGCCATGGTCGGCCACGTCCGTGCGCCGTCAGCGTGCGGGTCGCGCACCACGCCGG
ACGAGCTGGAGAACGAGTACCGTGCCACCTTGTGACACAAACAAGTGCACATTTGGAACAAAGGAATAGTAGCATTTGAA
TTTTTATCCTACAATATTCTTTATGTACTATGTTATAATACTTTATTTATTACGAAAAATAATCGATGTAAACTGTGAAG
TA--GCTGTAACTTGATCCAGAGATGCATGATTACCACGA--TCGTTCATTTTAGTTACATT------------------
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--
>SNPs
----------------S--S------------S--------S-----SSSSSSSSSSSS---------------------
----------S------------S------S--------SSSSSS-S-SSSS-----S-----SS-S--S----------
---S-SSS-----SSSSSSSSSS----S--S------------S------S--S----S-S----------S----S---
-------SSSSSSSS-------------S---S--------------S-----S---SSSSS--------S--S--S---
--------------S-----------S----SS--S------SS--------------SSSS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-----------S--------S----S--------------------SSSS------S---SS-----S
---------------------S--SSSS-S-S-SSSSSSSSSSSSSSSSSSSSS--------------S----------S
--S-SS--S------SSS-SS-S--------S----------S-------------------------------------
-----------------------------------------------S---S----------------------------
------------------------------------------------------------------S-------------
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----------------------------------------------------S---------------------------
-S--------S-------------------------------S-------------------------------------
-----------------------------------------S-------------S-------------------S----
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--------------------------------------------------------------------S-S---------
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----S---------------------------S-------------------------------------------S---
-------------------------------------SS-----------------------------------------
---S----------------------------------------------------------------------------
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--------------S--------------------------------------------S------------S-------
------S-------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-----S--------------------------------------------------------------------------
------------S-------------------------------------------------------------------
-----------------S-----------------------S--------------------------S-----------
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-------------------------------------S------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_971
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-----------------------------------------------------------------------ACGTACATT
TCCGCCCGTTA---------------------------------------------------------------------
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--
>reverse_2649
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--------CGCTTTCCTCTTTCCCGTCT----------------------------------------------------
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--
