>input_sequence_60738
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-----------------------------------------------ATGGGGGCGCGCGTCATGGCGTGGTGGCGGGCA
AGGGTGGTCGCGCCCATGCGCCGCGCCTGCAGGCTCGCCGTCGCCGCCGCCCGCGCCCGCGTCCGCAAGGGTGGTACGTA
AGCTATCACTACTCACTGCTCTGCTTTTCTTGGAACTGCCACTGAAGCGTGAACTGGAGCGATGAACTTGGTAGAAACA-
------GTACAATGCAATCGACTCGTTTTCTTCGACTCTACATATTAGCTCAGGCAGGCTCAAAGGATTTGCAGGCATAG
CAAACCTGCCATTCTTTGCTGAACCGGTGGATGTAGTCATGCATCTCGCTAATGCGACGGAAAATTCATCATGCCTGAAC
TAATTAATCTCCGATACCAAATTTGCCGTAGCCGTCATGCTTAG-TTTTTTTAGAGAAGACGCTCAAATGGCATCTTATA
---CTATCTGATAATTACCAAGAAAATACCCAATATTCAATGGAAAGACAATAAGATTGGTGGTCAGTTCATGGAACCAG
AAGATAGTAGCAGTGCTCCAAAGAATTAGGTGAAGGAGCATTATCACAAGAAGCAAACAAACGGATCCGAGAGATCGGCC
ATGGCCCATGCGCGT--------TATCTTTTTGCACGCTGCTGCACACCA-AAGGACTTGGGACACGTTATCTCGTGCTT
CCAACCGC--------CCATTTGCATTATGTACTTTGGACCACCTAATCTAATCCGCAGCCCTTATGGTGGTTACGCGGA
TACATCACCTGATATTCTCTCTCTGAGACAGGAGTATCCAGTAGTA----CACAATGCAACTAATTTGCTGCATAATGT-
--------------AGTACTCCCTCTGTTCCATGTTAATTGTATTCAGGAGTACTAACAAACTGCTTTAATCCTCGTTTG
GTTA-----------------------------------------------ATGGGATGAATGGTATGCAGAGTGCGGGG
TCCTGAACCTTCACCAGGACGTGCAGACGTGCGGCTACCACGACGTGCAGGTGATGTGGGACATGCTCAGCTCCGACAAG
GAGGCCGCTGCCGCCGCCTCGGCACCCGCGAAGCAGCAGCAGCGGCGG---AAGAGGCCGTTCTGGAAGCTGCCTCCGTC
GTTCTGGCCCGCCGGGTCGCCGCGCGCCGCCGCAGCGCAATGA-------------------------------------
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>chr7A_1_TraesCS7A01G494700
GAGGACGTTCGATGCTGCAGCTGTCACCCACGTATGTGTCTCGGGCTTGGTCTCTAGTCTCTACATCC--TGTGGTATCA
TATCACGACACCTTCAGAAATCTCTAGCGCTCCACCGAGAGGTGGTTCTAGTTCGGAGCACGTGAATTTCACGACAATAA
ACGAGTTGACACCAGCAGAAAACAAGGCAAGCTACCCCACAGTTGGTGTTTTCTACTGCTGCAACGGGATGGACACGGCT
GCCTGCCACGACGGTGAGCTATATCT---------------------TTCTGGGAGAGCGCGACGACGTCTCACCTCCAC
GCAATCTCGTTCCGGAAGAAGAACCCAGTCGCAATTCGCAAATGACCGTCTCCCACGGCATCTGCAGGGCGCGGGCTACG
AAATGATCTGGGTGGGAGCACACGTGAAGTCCGAACGAGCGCGTGCACCACGAGCGCTCCAGCCCATCCGTCCACCCAAC
AACCAGGAAGCGGATCATGTCAAATCACGACGCAACCATAAAATAATCCTAGAAACTGGGATCAGTAAGATGGGCAAATC
ATAGAGTAC------AGAATCTAACAGATCATTTCGAATTCAGAGGCGGAAATTTTGCACATATACATGACGATTGTGTT
AGTAGAGAAC--------------------------------------TTTTCTTCAGCGGACGGTTTTTTTTAGAAGAT
TTATGAAAAG-------------GTTACACATAGTCTGCACGTTTTATGCATTTTTCCACGCTGGGAACTAGTACTGCTG
CGGCTAGTCGGTAGGGCCCCAGAGCTTAAGCGCACGCCTATATAGAACTGCTAGCTAGTGA-----GTGTGGTGTGGCC-
-GTGTGGGTGAGGTTTCCTCCGTCAGAGGCCAAATTGTTGGAGAGGCAGGGCAGAGGCTGGCCCCTCGCGAGTTTGTGTG
CCGGCGGGTAACAGCCACGGCGAGGCTCGGCGGCCGTCCCCGGCGTCCGGCGGAGCCGTTCGACGGCGCCGGCGAAGCAG
AGGCGAGGCAGCCGGCGACGCGGCGGCGACATCGGCGGCGGCGGCAGATGGGGGCGCGCGTCATGGCGTGGTGGCGGGCA
AGGGTGGTCGCGCCCATGCGCCGCGCCTGCAGGCTCGCCGTCGCCGCCGCCCGCGCCCGCGTCCGCAAGGGTGGTACGTA
AGCTATCACTACTCACTGCTCTGCTTTTCTTGGAACTGCCACTGAAGCGTGAACTGGAGCGATGAACTTGGTAGAAACA-
------GTACAATGCAATCGACTCGTTTTCTTCGACTCTACATATTAGCTCAGGCAGGCTCAAAGGATTTGCAGGCATAG
CAAACCTGCCATTCTTTGCTGAACCGGTGGATGTAGTCATGCATCTCGCTAATGCGACGGAAAATTCATCATGCCTGAAC
TAATTAATCTCCGATACCAAATTTGCCGTAGCCGTCATGCTTAG-TTTTTTTAGAGAAGACGCTCAAATGGCATCTTATA
---CTATCTGATAATTACCAAGAAAATACCCAATATTCAATGGAAAGACAATAAGATTGGTGGTCAGTTCATGGAACCAG
AAGATAGTAGCAGTGCTCCAAAGAATTAGGTGAAGGAGCATTATCACAAGAAGCAAACAAACGGATCCGAGAGATCGGCC
ATGGCCCATGCGCGT--------TATCTTTTTGCACGCTGCTGCACACCA-AAGGACTTGGGACACGTTATCTCGTGCTT
CCAACCGC--------CCATTTGCATTATGTACTTTGGACCACCTAATCTAATCCGCAGCCCTTATGGTGGTTACGCGGA
TACATCACCTGATATTCTCTCTCTGAGACAGGAGTATCCAGTAGTA----CACAATGCAACTAATTTGCTGCATAATGT-
--------------AGTACTCCCTCTGTTCCATGTTAATTGTATTCAGGAGTACTAACAAACTGCTTTAATCCTCGTTTG
GTTA-----------------------------------------------ATGGGATGAATGGTATGCAGAGTGCGGGG
TCCTGAACCTTCACCAGGACGTGCAGACGTGCGGCTACCACGACGTGCAGGTGATGTGGGACATGCTCAGCTCCGACAAG
GAGGCCGCTGCCGCCGCCTCGGCACCCGCGAAGCAGCAGCAGCGGCGG---AAGAGGCCGTTCTGGAAGCTGCCTCCGTC
GTTCTGGCCCGCCGGGTCGCCGCGCGCCGCCGCAGCGCAATGAAGTGAACGGTGTAGGAGCTGGTGCCTGGCAATGTGGA
CAGAACGCCTGTACCATGGCACCCTGCCGCTGTCATGCTGCTGCCTGTCATTGCGCCGCGAGTTCATGGCAATGATCCCT
GCGACCAGACCAGCCCGACCATGCATGTGTACACATGATTTTTGTATAGTTTTTGGACAGTGCAAATCGCTTCTCCTCTG
ATCTGGTGTTAATTTGACCGTGCTCTGGCGTGGACAGAGCAGTTTGGACTTCGGACT-TGCCCCCGTCGATTTAGTGTTT
GAT-TATCATCATGCAGGGGGCAGCTAATATTCAACATGCAATTTGAAGAGGAAGTCATGTATTAGTCAGGCATCTATTT
TATTGTTTAGATTACAGAGGAGCTGCTCTCCTCCCTCGCCAGAACCGCCATCTCCTCTCTTCCCCACAGTCGCCACCTCG
TACCTCTCTCCGTCCACCCTTCCCCTCGCTACTGCTAGAGACCAGAGGCCGACTAAGTCCCGACATTGATCGATGAAGGC
GGCGGCGGGGACATCTCCTCTCCGGTACCGTTCCGCGTCGAGATGCGAGATCTACAAGCAATGACTTGAGGCAAAGGTTA
TGACTATGCAACAGTGGCGGCGGTGTTTTCGATCGGGCTGGCGATCTGGGTGGTGAGGCGTCAGTGGCCGCAATCTCATT
TGCATGTACACGAGCGGCAGTAGCGACCTTCTACATCCCAATTAGGTGGTCCTAACTCAGGCACGCAGTTGGCGTCGTGC
ACACGCGCTGCTGGGCGGTTGTCAGGGAGCATCAAATCGGGCGGCAACGATGAGTATGTTTTGTCGACCAATTCTGCCAT
CACTGACGAGGACGGTGGAGAATGAGGATAGTGGGAGACTACCAGAGTGTCCCCAGTTGGGATTTTGGCAGGGCCGGTGA
CATTATCCCCTTGCATTTTTTTTGCATGTGTGATGGTGACATTTGTCATTCCAAGCCTTTGGTAGCAACTGACACTTGTT
GCGGT
>chr7D_1
GACGACGTTCGATGCTGCAGCTGTCACCCACGTATGTGTCTCCGCTTGGA--------CTCTACATCCTGTGTGGTATCA
TATCATGACACCTTCAGAAAACTCTAGCA-TCCACCGAGAGGTGGTTTGAGATCATAGCACGTGAATTTCAGGACAATAA
ACGAGCTGACACCAGCAGAAATCAAGGCAAGTTACCCCACAGTTGGTGTTTTCTACTGCTGCAACGGGATGGACACGGCT
GCCTGCCACGACGGTGAGATATATTT---------------------TCTCACCTTCA----------------CTCCAC
GCAATCTCGTTCCGGAAGAACAACCCAGTCGCAATTCGCAAATGACCGTCTCCCACGGCATCTGCAGGGCGCGGGCTACG
AAATGATCCGGGTGGGAGCACGCGTGAAGTACGAACGAGCGCGTGCACCACGAGCGCTCCAGCCCATCCGTCCACCCAAC
AACCAGGAAGCGGATCATGTCAAATCACGACGCAACCATAAAATAATCCTAGAAACTGGGATCAGTAAGGTGGGCAAATG
AT--AGAGTATGTGTAGAATCGAACAGGTCATTTCGAATCCAGAGGCGGAAATTTTGCACATATACATGACGATTTTGTT
AGTAGAGAAT--------------------------------------TTTTTGCTAGAGGACGG-TTTTGTTGGAAGAT
TTATGAAAAG-------------TTTACACGTTGTCTACACGTTTTATGCATTTTTCCACGCTGGGAACTAGCACTGCTG
CGGCAAGTCGGTAGGGCCCCAGAGCTTAAGCGCACGCTTATATAGAACTGCTAGCTAGGGAGTGTGGTGTGGTGTGGCC-
-GTGTGGGTGAGGTTCA-TCCGTCAGAGGCCTAATTGTTGGAGAGGCAGGGCGGACGCAGGCTCCTCGCGAGGC--TGTG
CCGGCGGGTGGCAGCCACGGCGAGGCTGGGCGGCCGTCCCCGGCGTCCGGCGGAGCCCTTCGCCGGCGCCGGCGAAGCAG
AGGCGAGGCAGCCGGCGACGCGGCGGCGACAGCGGCGGCACCGGCAGATGGGGGCGCGCGTCATGGCGTGGTGGCGGGCA
AGGGTGGTCGCGCCCATGCGCCGCGCCTGCAGGCTCGCCGTCGCCGCCGCCCGCGCCCGCGTCCGCAAGGGCGGTACGTA
AGCCACCACTACTCGCTACTCTGCTTTTCTTGGAACTGCCACTGAAGCGTGAACTGGATCGATGAACTTCGTAGAAATAG
TAGTACGTACAATGCAATCGACCCGTTTTCCTAGACTTTGCATGTTAGCTTAGGCAGGCTCA------------------
-----------------------------------GGCATGCATCTAGCTAATGCGACCGCAAAATCATCATGACTGAAC
CAATTAATCTCCGAGACCAAAATTTGCGGAGCCGTCGTGCTTAGTTTTTTTTAGAGAAGACACTCAAATGGCATCTTATA
---GTACTACTCA---ATCAAGAATATACCCAATAGTTAATGGAAAGACAATAAGATTCGTGGTCAGTTCATGGAACCAG
AAGATAGTAGCAGTGCTCCAAAGAATTAGGTGAAGGAGCATTATCACAAGAAGCAAACAAACGGATCAGAGAGATCGGCC
ATGGTCCATGCGCGT--------TATCTTTTTGCACGCTGCTGCACACCA-AAGGACTAGGGACACGTTATCTCGTGCTT
CCAACCGC--------CCATTTCCATTATGTACTTTGGACCACCTAATCTAATCCGCAGCCCTTATGGTGGTTACGCGGA
TACATCACCCGGTATTCTCTCTCTGAAATAGGAGTATATAGTAGTA----CACAATGCAAATAATTTGCTGCATAATGT-
--------------AGTA-------------------------TTTAGGAGTACTAACACACTGCTTTAATCTTTTCTTT
TTTGCGAATTTAGTAAATAGGAGTACTAACACACTGCTTTAACCTTCGTGTATGGGATGAATGGTATGCAGAGTGCGGGG
TCCTGAACCTTCACCAGGACGTGCAGACGTGCGGCTACCACGACGTGCAGGTGATGTGGGACATGCTCAGCTCCGACAAG
GAGGCCGCTGCCGCCGCCTCGGCGCCGGCGAAGCAGCAGCAGCGGCGGCGGAAGAGGCCGTTCTGGAGGCTGCCTCCGTC
GTTCTGGCCCGCCCGGTCGCCGCGCGCCGCTGCAGCGCAGTGAGGCGAACGGCGTACGAGCTGGTGCCTGGCAATGTGGA
CAGAAGGCATATATCATGGCACCCTGCCGCTGTCATGCTGCTGCCTGCCATTGCGCCCCGAGTTCATGGCAATGATCCCT
GCGACCAGACCAGCCCGACCATGCATGTGTATACAAGATTATTGTATAGTTTTTGGACAGAGCAATTGAGTTCTGCTCTT
ATCTGGTGTTAATTTGCCCGTGCTCTGGCTTGGACAGAGCAGTTTGGACTTTGGACTTTGCCCCCATCGATATAGAGTCT
TTGACATCTTTATGC-AGGGGCAGCT------------------------------------------------------
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>chr7B_8
-------TTCGATGCTGCAGCTGTCACCCACGTATGTGTCTCCGCTTGGA--------CTCTACATCCTGTGTGGTATCA
TATGATGACACCTTCAGAAATCTCTAGCGCTCCACCGAGAGGTGGCTCTAGTAGGGAGCACGTGAATTTCAGGACAATAA
ACGAGCTGACACCAGCAGAAATCAAGGCAAGTTACCCCACAGTTTGTGTTTTCTACTGCTGCAACGGGATGGACACGGCT
GCCTGCTACGACGGTGAAATATATCTTTCTGGGAGAGCGCGACGACGTCTCACCTCCA----------------CTCCAC
GCAATCTCGTTCCGGAAGAAGAACCCAGTCGCAATTCGTAGATGACCGTTTCCCACGGCATCTGCAGGGCCCGGGGTACG
AAATGATCTGGGTGGGAGCACACGTGAAGTACGAACGAGCGCGGGTACCACGAGCTCTCCAGCCCATCCGTCCACCCAAC
AACCAGGAAGCGGATCATGTCAAATCACGACGAAACCATAAAATAATCCTACAAACTGGGATCAGTAAGGTGGGCAAATG
AT--AGTAC------AGAATCTAACAGATCATTTCGAATTCAGAGGCGGAAATTTTGCACATATACGTGACGATTTTGTT
AGAGAATTTTTTTCTTTCGAGCGGACGATTTTGGTAGAGATTTGTTTTTTCTCTTGAGCGGACGA-TTTTGTTACAGAAT
TTATAAATAGCTTAATCGCCTCATTTACACGTAGTCTGCACGTTTTAGGCATTTTTCCACGCTGGGAACTAGTACTGCTG
CGGCTAGTCGGCAGGGGCCCAGAGCTTAAGCGCACGCCTATATAGAACTGCTACCTAGGGAGTGTGGTGTGGTGTGGCCT
TGTGGGGGTGAGGTTCA-TCCGTCAGAGGCCAAATTGTTGGAGAGGCAGGGCAGAGGCTGGCCCCTCGCGAGGCTGTGTG
CCGGCGGGTAACAGCCACGGCGAGGCTGGGCGGCCGTCCCCGGCGTCCGGCGAAGCCCTTCGCCGGCCTCGGCGACACAC
AGGCGAGGCAGCCGGCGACTCGGG------------GGCACCGGCAGATGGGGGCGCGCGTCATGGCGTGGTGGCGAGCA
AGGGTGGTCGCGTCCATGCGCCGCGCCTGCAGGCTCGCCGTGGCCGCCGCCCGCGCCCGCGTCCGCAAGGGAGGTACGTG
AGCCACCACCACTCGCTACTCTGCTTTTGTTGGAACTGCCACTGAAACGTGAACTGGATCGATGAACTTCATAGAAACA-
------GTACAATGCAATCGACTCGTTTTCTTCGACTTTGCATGTTAGCATAGGCAGGCTCAAAGGTCTTGCAGGCAGAG
CAAACCTGCCATTCTTTGCTGAACCGGTGGATGTAGGCGTGCATCTAGCTAATGCGACCGAAAATTCATCATGACTGAAC
TAATTAATCTCCGAGACCAAATTTGCGGCAGCCGTCGTGCTTAGTTTTTTTTAGAGAAGACACTCAAATGGCATCTTATA
GTACTATCTGATAATTATCAAGAATATACCCAATACTTAATGGAAAGACAATAAGATTCGTGGTCAGTTCATGGAACCAG
AAGATAGTAGCAGTGCTCCAAATAATTAGGTGAAGGGGCATTATCACAAGAAGCAAACAAAGGGATCAGAGAGATCGGCC
ATGGTCCATGCGCCGATGCGCGGTATCTTTTTGCACGCTGCACACCAAAGGAAGGACCAGGGACACGTTATCTCGTGCTT
CCAACCGCTGAACCGCCCATTTGCATTACGTACTTTGGACCACCTATTCTAATCCGCAGCCCTTATGGTGGTTACGCGGA
TACACCATCCACTCTTTTCTCTCTAAGACAGGAGTATCTAGTGGTAGTAACACAATGCATGTTGTATTTAAGTCACTTAT
TTTGAGGCGGAGGGAGTA-------------------------TTCAAGAGTACTAAGACACTGTTTTAATCTTTTCCTT
TTTGCGAATGTAGTAAATAGGAGTACTAACACGCTGCTTTAATCTTCGTGTATGGGATGAATGGTATGCAGAGTGCGGGG
TCCTGAACCTTCACCAGGACGTGCAGACGTGCGGCTACCACGACGTGCAGGTGATGTGGGACATGCTCAGCTCCGACAAG
GAGGCCGCTGCCGCCGCCTCGGCGCCGGCGAAG---CAGCAGCAGCGGCGGAAGAGGCCGTTCTGGAGGCTGGCTCCGTC
GTTCTGGCCCGCCCGGTCGCCGCGCGCCGCTGCAGCGCAGTGAGGCGAACGGCGTACGAGCTGCTGCCTGGCAATGTGGA
CAGAACGCATATATCATGGCACCCTGCCGCTGCCATGCTGCTGCCTGCCATTGCGCCCCGAGTTCATGGCAATGATCCCT
GCGACCAGACCAGCCCGACCATGCATGTGTATACAAGATTTTTGTATAGTTGTTGGACAGAGCAATTTGCTTCCGCTCTT
ATCTGGTGTTAATTTGACCGTGCTCTGGCTTGGACAGAGCAGTTTGGACTTTGGACTTTGCCCCCATCGACATAGTCTTT
GAC-CATCCTTATGC-GGGGGCAGCTAATACTCAACGAGCAAT-------------------------------------
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>SNPs
--S---------------------------------------S-SS-S-SSSSSSSSS----------------------
-----S-----------------------------------------------------------------S--------
-----S---------------S---------S------------------------------------------------
------------------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
---------------------------------------------------------------------S---------S
--SS-----------------------------------------------------------------------S----
---------S---------------------------------------------S---------S----S---------
-----------------------S------S-------------------------------------------------
----------------------------------------------------------S---------------------
---------------SSS------------------------------------------------------SS------
---------------------------S-----------------------------S----S-----------------
-------------------------------S-------SS---------------------------------------
-----------------------------------------------------------------------S--------
---S-S--------S--S----------------------------------------S----------S----------
-------------------------------------S-S---S------S---------------SS---------S--
------------------------------------S---------S-----------S--------------S------
--------------S-------------S-------S------------------------S------------------
-----------------S------S----------S-S--------------------S---------------------
-------------------------------------------------------------------S------------
----S-----------------------------------------------------S---------------------
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---------S-S--------------------------S---------------------S-------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSS----------------S------------S-SSS--S
S--S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--S----------------------------------------S------------
-------------S----------------S--------S---S-S------S---S-----------------------
--------S-S--S---------------------------------S---------S----------------------
-------------------------------S---S------------------------S----S-S------S----S
-----------------------------S---------------------S-------------S-----S--------
--S-S---S-S----S--------------S-----SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_56
------------------------------------TGTCTCGGGCTTGGTCTCTA------------------------
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>reverse_1324
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-------------------------------------------ATTAGCTCAGGCAGGCTCAA-----------------
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>forward_1204
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----------------------------------------------------------------GCAAGGGTGGTACGTA
AGCT----------------------------------------------------------------------------
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>reverse_2681
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----------------------------------------AGAACCGCCATCTCCTCTCT--------------------
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