>input_sequence_60576
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------------------------------------------------------ATGAACAAGGCCGCACGAGCAGGAGC
GATGCTTTCCCTTCGCGGCCTCCCGGATGAGATTGTAATATGGGAGATCCTCGTCCGCCTATCTCCCAAAGC--CCTCCT
TCGCTGCTGTGCCGTCTGCCGTGCCTGGCGCAGGGCCACCTCCACTCACGACTTTCTTCTCGCCCATCACGCCCGCCAGC
CTATCCTTCCCCTACTCGAAAATGGCAATGAGTTAGACATCTTCGACCATCGGCCAACCCGGGCTACCGCGGACCAGTTT
CAGTCCTTTGACATATGTGGCCAAAACTTCTTGAATTTGGGTGACGACTTCGCTTTCTTCCATCTGGTTGCCTCCTGCGA
TGGCATGCTCATTCTCCGCATCGACGACACCGACTTATTCGTCTGCAATCCGATGACTCGTCAGTATGCTTGCCTGCCAT
TGCATCTCGGTCATAAATGGACGCTCCTAGGAATGTACCCTCACCCTCCTACCGGCGAGTACAGAGTACTTCTCTACTTG
TCCAACCCTGATGCAGACC---ATAAGCTGACACC------TGGCAGTT------ACGTCTTGGCGCTGGGCTCCGGCCA
GCCACCGAGGCAAATCGAATGGCCAGATGCGATTAATCTGGAATCC---------GAACCTTAT------TTCCGTGGTA
GCCTGCATTGGTACCCAAC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GAATGTTGAGAGCGAAAATAAAACGATATATGTGTTCAACACCACATCTGAGTCGGT
CCGAGAGATGTGTGCTCCGGTTGTTATTGATTGCGCTAACCTGTTTGAGAAGGACGGCATGCTCGGCACGGTCATAGTTG
ATTATATGAAAACCGTTGATATATGGTTGTTGCAAGACTTCGAGAGGGAGGTTTGGACCTTCAATTGCCGGATTGAATTG
CCGGTTCAACAGATCGGGATGCAGTGTGACAGGTGTGACAGTCGGTTGCCGTGGAAATTGGTGGTCGTGCCAGGGGATGA
TGCGTTGCTTGTGTTGATCAAATTTGGCGAGTGGCTATTTCATGTTGGCAAGGATGGCAAGTTGGTCGCCACTTTTCATC
GCAAAAATGTCGATCCTACTCACTTTCAGCTCAAACAAACTCTTGTTCCACATACCTTGTTTCAAACATCGTAG------
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------------------------------------------------------
>chr3D_1_TraesCS3D01G471300
ATGTTCGCTTCAGTTTTTTGTTTATTTTTTTCCAAAAGCTGAGCCGGATAAAAAAGAAACAAACAATAAAACCGCAGTTT
TGAGGGACAATTAAACTCCTGGTATGCTCTGTTTTTTTGTTTCTTTTTTTCCAAAAACTGAGCCGGATAAAAAAAA--GA
AACAAACAATAAAACAGCAGCTTTGAGGGACAATTAAAAAAAATCAATGGAAGAAACTTGACAAACAGAGGACCACAAAT
ATGGATGACATCATCTTAGATGTGAGATAATATCTCACATCTAGATGCGATATATACAAACCCTAGATGTGAAAATAGAA
ATATGTTTATACATCGCCAAATATGTAAATCTTGGCGCAAATCGACGGCAAAGAATCTGCGTGCCCCCGCCATTGATGTG
CCCTAAATCCTCTCCCATACAGGCACCGTAAAATAAAGGAGGGTAAAGAGTTGCTGGTTGAGTTTGTTTTTGAGGCATGC
CTACAAAATTGTTTGTTCTCCATGTTCGATTCGGTTCCATGTGGAACATGCCGCACACGGCCGGGACACGAGCCTGGCGC
TTGCTCTAGGCTGGATCCTATCCTTCTTCGGCTTTCGGTCCGACTCCGTCGGTAGGGCATTTTGGACTCCTCGAGGCCGA
TCTGCACCGCTTCCACGCGTGTGCACCGCAGCCACACGTACACGCAAGCGGTGGCCAAGCGTGTTGTATTAACCACGATG
TGTGGT-----GTTGTGTCCGTGTCCGGTTTGGACACGAAAATAATCACCGGTCCGCATAGGATACAACACGACATATGT
ATAGGCTATGGACTAACCCTCTCTAGACTATATATATCGGTGT---ATGCGACCCTTGTAATCACCCAGATCGAAAGAAA
GAAAACTCGCCGG-AGGAAGCCAGCATATTCCGTGAAAGAGAAGGGCCTACCCCGATCCGCCGCCGTCACAACTCCTCTT
GCTTAGTTC-CCGGCCGGGGCGGATACATAGAA--CTCTCAGCTGGCGACCACCATGAACAAGGCCGCACGAGCAGGAGC
GATGCTTTCCCTTCGCGGCCTCCCGGATGAGATTGTAATATGGGAGATCCTCGTCCGCCTATCTCCCAAAGC--CCTCCT
TCGCTGCTGTGCCGTCTGCCGTGCCTGGCGCAGGGCCACCTCCACTCACGACTTTCTTCTCGCCCATCACGCCCGCCAGC
CTATCCTTCCCCTACTCGAAAATGGCAATGAGTTAGACATCTTCGACCATCGGCCAACCCGGGCTACCGCGGACCAGTTT
CAGTCCTTTGACATATGTGGCCAAAACTTCTTGAATTTGGGTGACGACTTCGCTTTCTTCCATCTGGTTGCCTCCTGCGA
TGGCATGCTCATTCTCCGCATCGACGACACCGACTTATTCGTCTGCAATCCGATGACTCGTCAGTATGCTTGCCTGCCAT
TGCATCTCGGTCATAAATGGACGCTCCTAGGAATGTACCCTCACCCTCCTACCGGCGAGTACAGAGTACTTCTCTACTTG
TCCAACCCTGATGCAGACC---ATAAGCTGACACC------TGGCAGTT------ACGTCTTGGCGCTGGGCTCCGGCCA
GCCACCGAGGCAAATCGAATGGCCAGATGCGATTAATCTGGAATCC---------GAACCTTAT------TTCCGTGGTA
GCCTGCATTGGTACCCAAC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GAATGTTGAGAGCGAAAATAAAACGATATATGTGTTCAACACCACATCTGAGTCGGT
CCGAGAGATGTGTGCTCCGGTTGTTATTGATTGCGCTAACCTGTTTGAGAAGGACGGCATGCTCGGCACGGTCATAGTTG
ATTATATGAAAACCGTTGATATATGGTTGTTGCAAGACTTCGAGAGGGAGGTTTGGACCTTCAATTGCCGGATTGAATTG
CCGGTTCAACAGATCGGGATGCAGTGTGACAGGTGTGACAGTCGGTTGCCGTGGAAATTGGTGGTCGTGCCAGGGGATGA
TGCGTTGCTTGTGTTGATCAAATTTGGCGAGTGGCTATTTCATGTTGGCAAGGATGGCAAGTTGGTCGCCACTTTTCATC
GCAAAAATGTCGATCCTACTCACTTTCAGCTCAAACAAACTCTTGTTCCACATACCTTGTTTCAAACATCGTAGAGTTAT
GTTGTGAGTGTTCCACCTATCATCTGAAGGCTCGTGCTTGGTGGCATTGTTGTAATTTTTTATTTTATTTGTGCCAACTA
TTGTAACCTGA-GTCCTTTCTTGTGGGATTTATT---CCCACTCATGCGGGAATATAATGAGGAATTTAGTTTGCCAAAT
AATAATAATAATTCA------GAAG---GCTGTTCAGTGGGCTGGTGCTTCTTAGCATCCTGGATGTTTTGTATCCTCAC
AAGAACATGAAAGTGCGCCTTGCCTCATCCGGTCATCTCCGGA--ATAGTGTAATT-TTGAAGGAAAATTTGTTAAGGAA
ATAACGATAGAATAATAAAATAAAATAACTAACAAGCATCTTAGAATTTGGACGGTTTGAATGATGACATACGCCTTTCA
TGTAATGGTGGGGCATATTTGTTTACCAAAGAGTACTAGGCGTCGGCCAACCAGCCAAAACTTTTTGCTGGTCACAGCGC
GGCCATACCATTTAATCCGCACACACCGTTGGATCGCATCTCTCCTCCACCCGTGCAAC-GTTCCCCGATCCAATTTCTT
TCCCCAAATCCTCATGGCAGTTGCAGGCCCAGATGCGCAGCGTGGCTGACCCCGTCTCTGCGGTCCGCGACTGTCCTCTC
CAGCCACCGTCCAGGTCTCCCCTGCAGCACATCGCCGAGGCTCACCGCGGCTCACCGTCGCTGTTGCCGCAATGTTGCTT
-GTTGAAGCATCTCTATTGTGGATCTCTTCAAAACTTCTTCACAGGTCGCAGCTCAGAGTCTCGCTGCTGGTAGGTCGTC
GTCTTCATTCATTGCAGCTCGTTGCTGTCGTGTCTCGCCGCCAAAAAAGAAGTCAATGTAATTCTGCATCGAATAAAATA
AATGCCAATTCCAGCA-AATTGGGGCATGGTTCCACCACGACGCAACCTCTCGTGTGCATCAAATACAAATGCCGGTCCC
CGCAAAATTGGGACATGGTTCTAG-AAAAAAAGAAAATGATGCAGCCCAAAAAA
>chrUn_1
ATGTTCGCTTCAGTTTTTTGTTTATTTTTTTCCAAAAGCTGAGCCGGATAAAAAAGAAACAAACAATAAAACCGCAGTTT
TGAGGGACAATTAAACTCCTGGTATGCTCTGTTTTTTTGTTTCTTTTTTTCCAAAAACTGAGCCGGATAAAAAAAAAAGA
AACAAACAATAAAACAGCAGCTTTGAGGGACAATTAAAAAAAATCAATGGAAGAAACTTGACAAACAGAGGACCACAAAT
ATGGATGACATCATCTTAGATGTGAGATAATATCTCACATCTAGATGCGATATATACAAACCCTAGATGTGAAAATAGAA
ATATGTTTATACATCGCCAAATATGTAAATCTTGGCGCAAATCGACGGCAAAGAATCTGCGTGCCCCCGCCATTGATGTG
CCCTAAATCCTCTCCCATACAGGCACCGTAAAATAAAGGAGGGCAAAGAGTTGCTGGTTGAGTTTGTTTTTGAGGCATGC
CTACAAAATTGTTTGTTCTCCATGTTCGATTCGGTTCCATGTGGAACACGCCGCACACGGCCGGGACACGAGCCTGGCGC
TTGCTCTAGGCTGGATCCTATCCTTCTTCGGCTTTCGGTCCGACTCCGTCGGTAGGGCATTTTGG---------------
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>chr3A_700
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-------------------------------------------------------------TGTTGTATTAACCACGATG
CGTGGTCTGGAGTGGTGTCCGTGTCCGGTTTGGACACGAAAATAATCACCGGTCCGCATAGGATACATTACATATA----
----GCTATGGACTAGCTCTCTCTAGGTTATATATATCAGTGTATAATAAGGCCCTTGTAATTACCCCGATCAAAAGAAA
ACAAACTTGTCGGAGGAAGGCCAGCATATTCTGACAAAGAGAAGGCCCTGCCCCGATCGGCCGCCATCACAGCTAATCTC
GCTTTGTTC-CCGGGA----CGGATATATAGAA--CTCTCAGCTGGCGACCACCATGAACAAGGCTGCAGGAGTAGGAGT
GACCCTTCACCTTCGTGGCCTCCCGGATGAGATCGTAATCTGGGAGGTCCTCGTCCGCCTATCTCCCAAACCCTCCTCCA
CTGCTGCCGTGCCGTCTGCCGTGCGTGGCGCGACGCCACCTCAACTCACGACTTTCTCCTTGCCCATCACGCCCGCCAGC
CTATCCTACCCTTGCTCCAAAATGACGACTTCCTAGACATCTTCGACCATCGGCCAAGCCGGGATGCCACCGACCAGTTC
CAGTCCATTGACATACGCGGCCAAGACATCTTGAATTTGGGTGGCCACTTTGCCCTCTTACATCTAGTTGCCTCTTGCGA
TGGCATGCTCATCGTCTGCATCGACGACACCGACTTCTCCATTTGCAATCCGACTACTGGTCAGTATGCTTGCCTACCAT
TGCATCTGGGTCATAAATGGACGCTCCTAGGAATGTACTCTCACCCTCCTACTGCCGAGTACAGAATACTTCTCTACGTG
TACAGCTCTGACGAAAACC---ATGAACAGCCACC------TGGCAGTT------ACGTCTTGGCCTTGGGCTCCGGCCA
GACGCTGAGGCACATCGGATGGTTAGATGCGTTTCATCTGGAATCT---------GAACTTTATATGCTATTCCGTGGTA
ACCTCCATTGGTACCCATC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGATGCTGAGAACCCAAACAAAATGAAAACCGTGTTCGACACCATATCTGAGTCATT
TCGAAAGATGAGTGCTCCCGCTGTTACTGACTGCGCTAACCTATTTGGGAAGGATGACATGCTCGGCATGGCCATCTTTG
ATTATGTGAAAACCATTGATATTTGGTTGTTGCAAGACTTTGAGAGGGAGGTTTGGACCTTCAATTGCCGGATTGAATTG
CCGGTTCAACAGACAATGAAGCAGTGCGACAGGTGCGACAGTCGGTTGTCGTGGAAATGGGTGGTCGTGCCT-GGGATGA
TGAGTTGCTCGTGTTGATTAAACTTGATGAGTGGCTATTTCAGGTTGGCAAGGATGGCGAGTTTGTCGTCACTTTCCATC
GGAAAGAAGTCGATCCTACTCGCTTTCAGCTCAAACAAACTCTTATTCCGCATACCTTCTTTCCAACACCGTAGAGTTAT
GTTGTGGATGACCCACCTATCATCTGAAGGCTCGTGCTTGGTGGCATGGTTGTAACTGTTTATTTTATTTGTGCCAACTA
TTGTAACCTGCTGTCGTTTCTTGTGGGGTTTTTATTCCCCACTAATATGG---TATAATGAGGGATTTAGTTTGCCAAAT
AATAATAATAATAATAATTTGGAAC---GTTGTTCAGTGGGCCGGTGCTTCTTAGCATCCTGGATGTTTTGTATCCTCAC
ATAAACATGAATGCACGCACTGCCGTATCCGTCCATCTCCTGAATATAGTGTAATT-TTGAAGAAAAATATGCTAAGGAA
ATAACAATATTAAA-------AAAAGAACTAACCTGCACGTTAGAATTTGGATGTTTTGAATGATG----ATGCCCTTCA
CGTGATGGTGGGACATATTTGTTT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr3B_833
--------------------------------------------------------------------------------
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---------------------------------------GTGT---ATAAGACCCTTGTAATTACCCTGATCAAAGAAAA
ACAAATTCGCTGG-AGGAAGCCAACATATTCCGTGAAAGTGAAGGCCCTACCCTGATCCGTCGCCGTCACAACTAATCTC
GCTTTCTTTACCGGGA----CGGATATATAGAA--CTCTCAGCCGGCAACCACCATGAACAAGGCTGCAAGAGCAGGAGC
TACGCTTCACCTTCCCGGCCTCCCGGATGAGATCGTAATCTGGGTGGTCCTCGTCCGCCTATCTCCCAAAGC--CCTCCT
CCGCTGCCGCGCCGTCTGCTGTGCGTGGCGCGACG---CCTAAACTCACGACTTTCTCCTCACCCATCACGGCCGCTAGC
CTATCCTACCCTTGCTCCAAAATGACAAGTTCCTAGACATCTTCGACCATCAGCCAACCCGGGATGCCACCGACCAGTTC
CAGTCCATTGACATACGTGGCCAAGACATCTTGAATTTGGGTGGCCACTTTGCCTTCTTACATCTAGTTGCCTCTTGCGA
TGGCATGCTCATCCTCTGCATTGACGACACCGACTTCTTCGTCTGCAATCCGACGACTCGTCGGTATGCTCGCCTGCCAT
TGCATCTGGGTCATAAATGGACGCTCCTAGGAATGTACCCTCACCCTCTTACTGGCGAGTACAGAATACTCCTCTACGTG
TC-AACCCTGATGCAAACC---ATGAGCTGGCACC------TGGCAGTT------ACGTCTTGGCGTTGGGCTCCGGCTA
GACGAAAAGGCACATCGGATGGTTAGATG---------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr3B_846
--------------------------------------------------------------------------------
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-------------------------------------------------------TTGTAATCACCCAGATC-AAAGAAA
GAGATCTCGCCGG-GGGAAGCCAGCATAATCTA-GAAAGAGAAGGGCCTGCCCCGATCCGCCGCCGTCGCAACTAATCTC
GCTTTGTTC-CCGGGA----CGGATATATAGAAAACTCTCAGCCGGTGACGACCATGGACAAGGCCGCAGCAGCAGGAGC
GACACTTTCCCTTCGCGGCCTCCCGGATGAGATCGTAATATGGGAGATCCTCGTCCGCCTATCTCCCAAAGC--CCTCCT
TCGCTGCCGCGCCGTCTGCCGTGCCTGGCGCAGCGCCACCTCCACTCACGACTTTCTCCTCGCCCATCATGCCCGCCAGC
CTATCCTTCCCCTACTCGAAAATGGCGATGAGTTAGACATCTTCGACCATCGGCCAACCCGGGCTACTGCGGACCAGTTT
CAGTCCTTTGACATATGTGGCCAAAACTTCTTGAATTTGGGTGACAACTTCGCTTTCTTCCAATTGCCGTTGATTATG--
--------------------------------------------------------------------------------
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------------------------------------------------------TGAAAACTTCGGCATGGCCATCGTTG
ATTATGTGAAAACCGTTGATATATGGTTGTTGCAAGACTTCGAGAGGGAGGTTTGGACCTTCAATTGCCGGATTGAATTG
CCGGTTCAACAGATCAGGATGCAGTGCGACAGGTGTGACAGTCGGTTGCCGTGGAAATTGGTGGTCGTGCCAGGGGATGA
TGAGTTGCTTGTGTTGATCAAATTTGGCGAGTGGCTATTTCATGTTGGCAAGGATGGCAAGTTGGTCGCCACTTTTCATC
GCAAAAATGTCGATCCTACTCACTTTCAGCTCAAACAAACTCTTGTTCCACGTACCTTCTTTCAAACATCGTAGAGTTAT
CTTGTGAGTGTTCCACCTATCATCTGAAGGCTCGTGCTTGGTGGCATGATTGTAATTTTTTATTTTATCTGTGCCAACTA
TTGTAACCTGA-GTCCTTTCTTGTGGGATTTATT---CCCACTGATGCGGGAATATAATGAGGATTTTAGTTTGCCAAAT
AATAATAATAATTCA------GAAG---GCTGTTCAGTGGGCTGGTGCTTCTTAGCATCCTGGATGTTCTGTATCCTCAC
AAGAACATGAAAGCGCGCCTTGCCTCATCCGTTCATCTCCGGA--ATAGTGTAATTTTTGAAGGAAAATTTGTTAAGGAA
ATAACGATAGAATAATAAAATAAAAGAACTAACAAGCATCTTAGAATTTGGACGGTTTGAATGATG----ACGCCTTCCA
TGTAATGGTGGGGCATATTTGTTTACGAAAGAGTACTAGGCATCGGTCAACT-GCCAAAACTTTTTGCTGATCACCGCGC
GGCCATACGATTTAATCCGCACACATAGTTGGATCGCATCTCTCCTCCACCCCTGCAAC-GTTCCCTGATCCATTTTCTT
CCCCCAAATCCTCATGGCAGTTGCAGGCCCAGATGCGCAGCACGGTTGACCTTGTCTCTGCAGTCCGCGACTGTCCTCTC
CGGCCACCGTCCACGTCTCCCCTGCCGCACATCGCCAAGGCTCACCGCGGCTCGCCGTTGCTGTAGCCGCAATGTTGCTT
-GTTGAAGCATCTCTATTGTGGATCGCTTCAACACTTCTTCACCGGTCGCAGTCCAGAGTCTCGGGGCTGGTAGGTCGTC
GTCTTCGTTGATTGCAGCTCGTCGCTGTCGCGTCTCGCCGCCAAAAAAGAAGTCAATGTAATTCTGCATCGAATAAAACA
AATGCCAGTTCCAGCA-AATTGGGACATGGTTCCACCACGACACAACCTCTTGTGTGCATCAAATACAAATGCCGGTCCC
CGCAAAATTGGGACATGGTTCCAGCAAAAAAGAACAATGATGCAGCCCAAAAA-
>chr3A_846
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-------------------------------------------------------TTGTAATCGCCCAGATCAAAAGGAA
GAAAACTCGCCGG-GGGAAGCCAGCATAATCCGTGAAAGAGAAGGGCCTACCCTGATCCGCTGCCGTCACAACTCCTCTT
GCTTTGCT---------------------------CTCTCAGCTGGCGACGACCATGG---AGGCCGCAACAGCAGGAGC
GATGCTTTCCCTTCGCGGCCTCCCGGATGAGATGGTAATATGGGAGATCCTCGTCCGCCTATCTCCCAAATC--GCTCCT
TCGCTGCCGCGCCGTCTGCCGTGCCTGGCGCAGGGCCACCTCCACTCAGGACTTTCTCCTCGCCCATCACGCCCGCCAGC
CTATCCTTCCCCTACTCGAAAATGGCGATGAGTTAGACATCTTGGACCATCGGCCAACCCGGGCTACCGCGGACCAGTTT
CAGTCCATTGACATATGTGGCCAAAACTTCTTGAATTTGGGTGACGACTTCGCTTTCTTCAATCTGGTTGCCTCTTGCGA
TGGCATGCTCATCCTCCGCATCGACGGCACCAAGTTCTTCGTCTGCAATCCGACGACTCGTCAGTATGCTCGCCTGCCAT
TGTATCTCGGTCATAAATGGACGCTCCTAGGAATGTACCCTCACTCCCCTACCGGCGAGTACAGAGTACTTCTCTACTTG
TCCAGCCCTGACGCAGACC---ATAAGCCGACACC------TGGCAGTT------ACGTCTTGGCGCTGGGCTCCGGCCA
GCCCCCAAGGCACATCGGGTGGCCAGATGCGATTAATCTCGAATTG---------GAACCTCATGTGCTATTCCGTGGTA
GCCTGTATTGGTACCCAACCTGTGTTTTGATTTTCGGTTTGAGATTTTTTTCGCCCTAGACCGAGATGGCCGAATTTCGG
CCATTTTCAAAAATTTCGGCTGAGATTTGACCAAATTTTGACTGCAATTTGACTTAAATTTGGCCAAAATTTGCCAAATT
TGAGCAATTTCGGCCTAAGTATACTTTTCGCCCCAGGCCGAGATGGCCGAATTTCGGCCGAAATCCACTTTTTTCGGCCG
AAAATCAAAACACAGTACCCAACGGATGTTGAGAGCGAAAATAAAACGATATATGTGTTCAACACCACATCTGAGTCGGT
CCGGGAGATGTGTTCTCCGGTTGTTACTGATTGCGCTAACCTGTTTGAGAAGGACGGCATGCTCGGCATGGCCATCGTTG
ATTATATGAAAACCGTTGATATATGGTTGTTGCAAGACTTCGAGAGGGAGGTTTGGACCTTCAATTGCCGGATTGAATTG
CCGGTTCAACAGATAAGGATGCAGTGCGACAGGTGTGACAGCCGGTTGCCGTGGAAATTGGTGGTCGTGCCAGGGGATGA
TGAGTTGCTTGTGTTGATCAAATTTGGCGAGTGGCTATTTCATGTTGGCAATGGTGGCAAGTTGGTCGCAACTTTTCATC
GCAAAAATGTCGATCCTACTCACTTTCAGCTCAAACAAACTCTTGTTTCACATACCTTCTTTCAAACAACGTGGAGTTAT
GTTGTGAGTGTTCCACCTATCATCTGAAGGCTCGTGCTTGGTGGCATGATTGTA---TTTTTTTTTATTTGTGCCAACTA
TTGTAACCTGA-GTCCTTTCTTGTGGGATTTATT---CCCACTAATGCGGGAATATAATGAGGAATTTAGTTTGCCAAAT
AATAATAATAATTCA------GAAGAAGGCGGTTGAGTGGGCTGGTGCTTCTTAGCATCCTGGATGTTTTGTATCCTCAC
AAGAACATGAAAGCGCGCCTCGCCTCATCCGTTCATCTCCGG--------------------------------------
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>chr3D_1291
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--------------------------CTTATTGAACTTGGCCGATGGCTTCGCCTTCTCTTATCTGGTTGCCTCCTGTGA
TGGCCTCCTCATCTTTTGCAACGACGATGTCGACTTCTTTATATGCAATCCGACAACTCGTCAGTATGCTCCCCTCTTGC
TGCCTAAGGATTATAGCTGGACTCTCCTGGGAATGTACCCTCACATCCCTACCGGCGAGCATAGACTACTGCTCCACTCG
TACAAGCGTTACCTAGCCA---ATGAGCTAGCACC------TCAATTTGCATGCCACGTCTTATCGTTGGGCTCTGGCCA
GCCAGCGAGGCGCATTGGGTGGCCAGATGAGATTATGCCGGAATTT---------GACCCACATGTACTATTCCGTGGTA
ACCTGCATTGGTTCCCGTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GCATGATGACCGTGAAAGCAAGATGATAACGGTGTTTGACACCACATCTGAGTCGTT
CCAGGAGATGCGTGCTCCTGTTGTTACTGACTACACTCACCTGTTTGAGATAGACGACAAGATCGGCATGGCCACCATGG
ATTTTAAGACAACCATTGATATTTGGATGTTGCAAGACTATGAAAGGGAGGTCTGGGCCTTCAATTGCCGGATTGAATTA
CCTATTGCGGAGATCAGGGGGCATTGCGACAAGTATGACAGTCGGTTGCATTTTAGTTTGGTGGTTGTGCCAGGGGATGG
TGAGTTGCTCGTGCTGGTCAAATTTGCCGAGTCGATACTCCAGGTTGGCATAGATGGCAAGTTGGTCGCGACATTCCATC
GCAAAGAATTCAATCTTACTCATTTTCAGCTCAAACAAACTCTTGTTCCACATACCTTCTTTCCGACACTAAAGGGTTAT
GTTGTGAATGCTCCGCCTTTCACTTGAAGG--------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1330
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-----------------------------------------------------------------GGTTGCCTCCTGCGA
TGGCCTCGTCATCTTCTGTGTCGAGGACACCGACTTCTTCGTATGCAATCCGGGAAGTCGCCAATATGCTCGCCTCCCGC
TGCCTACGGATCATAAATGGACGCTCCTAGGAATGTACCCTCACCCCCCTACCGGTGAGTACAGACTACTTCTTTACTCG
TACAGAGGTAACCCAAACGATGATGAGCCGGCGCCCAATAGTCAATTTGCATGCCTTGTCTTGGCATTGGGCTCTGGGAA
GCCGCCGAGGCACATCGGGTGGCCAGATGCTATTACGATTACGGTGCT-GGATTAAACCCTCATGTGCTATTCCATGGTA
GCCTGCATTGGTATCCATT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGATAATGATGGCAAAAGCGCAATGATAGTAGTGTTCAACACAACATCCGAGTCATT
CCGAGAGATGCGCGCTCCTGTTGTTACTTACTGCGCCGACATATTTGAGATAGACGACAAGCTCGGCATGTGTACCTCTG
ATTGTGTGAATACCATTGATATATGGGTATTGCAAGACTATAAAAGGGAGGTGTGGACCTTAAATCGCCGGATTGAATTA
CCGGTTGCGGAGATCAGTACGT---------GGTGTGACGAGCAGTCATGGTCGGATGTGTTGGTCGTACCTGGGGATGG
TGAGTTGCTCATGTTGGTCAAATCCGACGAGTGGCTACTTAAGGTTGGAATGGATGGCAAGTTGGTCGCCACGTTCCATC
ACAAAGAATTCGAGCTTACTCACTTCCGGCTTAAACAAACTCTTGTTCCACATACCTTCTTTCCAACACTAGAAGGTTAT
GTTGTAAATTCCCCGCCTTTCATCTGAAGGCT------------------------------------------------
--------------------------------------------------------------------------------
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>chr3A_1330
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-----------------------------------------------------------------GGTTGCCTCCTGCGA
TGGCCTTCTCATCTTCTGTGTCGAGGACACCGACTTCTTCGTATGCAATCCAGCAAGTCGCCAATATGCTCGCCTCCCGC
TGCCTACGGATCATAAATGGACGCTCCTAGGAATGTACCCTCACCCCCCTACCGGTGAGTACAGGCTACTTCTTTACTCG
TACAGAGGTAACCCGGACCATGATGAGCCGGCGCCCAATAGTCAATATGCATGCCATGTCTTGGCATTGGGCTCCGAGAA
GCCGCCGAGGCACATCGGGTGGCCAGATGCTACTACGATTACGGCGCTGGGAATAGACCCTCATGTGCTATTCCATGGCA
GCCTGCATTGGTATCCATT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGACAATGATGGCAAAAGCGCAATGATAGTAGTGTTCAACACAACATCCGAGTCATT
CCGACAAATGCGCGCTCCTGTTGTTACTTACTGCGCCGACATATTTGAGATAGATGACAAGCTTGGCATGGCCACCTCTG
ATTGTGTGAAAATCATTGATATATGGGTATTGCAAGACTATGAAAGGGAGGTGTGGACCTTAAATCGACGGATTGAATTG
CCGGTTGCGGAGATCAGTGTGCT---------GTTTGACGAGCGGTCATGGTTGGATGTGTTGGTCGTACCTGGGGATGG
TGAATTGCTCGTGTTGGTCAAATCTGACGAGTGGCTACTTAAGGTTGGGATGGATGGCAAGTTGGTCGCCACTTTATATC
ACAAAGAAGTCGAGCTTACTCACTTTCGGCTCAAACAAACTCTTGTTCCACATACCTTCTTTCCAATACTAGAGGGTTAT
GTTGTAAATTCCCCACCTTTCATCTGAAGGCT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr3A_1330
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GGTTGCCTCCTGCGA
TGGCCTCGTCATCTTCTGTGTCGAGGACACCGACTTCTTCGTATGCAATCCGGCAAGTCGCCAATATGCTCGCCTCCCGC
TGCCTACGGATCATAAATGGTCGCTCCTAGGAATGTACCCTCACCCTCCTACCGGTGAGCACAGACTACTTCTTTACTCG
TACAGAGGTAACCCAAACGGTGATGAGCGGGCACCCAATAGTCAATTTGCATGCCATGTCTTGGCATTGGGCTCTGGGAA
GCCGCCAAGGCACATCGCGTGGCCATATGCTATTACGATTACGTCGCTGGGATTAAACCCTCATGTGCTATTCCATGGTA
ACCTGCATTGGTATCCATT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGACAATGATGGCAAAAGCGCAATGATAGTAGTGTTCAACACAACATCCGAGTCATT
CCGAGAGGTGCGCGCTCCTGTTGTTACTTACTGCGCCGACATATTTGAGATAGACGACAAGCTCGGCATGTCTACCTCTG
ATTGTGTGAAAACCATTGACGTATGGGTATTGCAAGACTATGAAAGAGTGGTGTGGACCTTACATCGCCGGATTGAATTG
CCGGTTGCGGAGATCAGTGCGT---------GGTGTGATGAGCAGTCATGGTTGGATGTTTTGGTCGTACCTGGGGATGG
TGAGTTGCTCGTGTTGGTCAAATCTGACGAGTGGCTACTTAAGGTTGGAATGGATGGCAAGTTGGTCACCACGTTCCATC
ACAAAGAAGTCGAGCTTACTCACTTTCGGCTTAAACAAACTCTTGTTTCACATACCTTCTTTCCAACACTAAAGGGTTAT
GTTGTAAATTCCCCGCCTTTCATCTGAAGGCT------------------------------------------------
--------------------------------------------------------------------------------
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>chr4D_2528
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---------------------------------TACTAGGCGTCGGTCGACCGGCCCGAACTTTCGACCGGTCGCCGCGC
GGCCATACGATTTAACCCGCACACACCGTTGGATCGCATCTCTCCTCCACCCCTGCAACCGTCCACCGATCC-ATTTCTT
CCCCCAAATTCTCATGGCAGTTGCAGTCACAGATGCGCAGCGCGGTTGACCC-GTCTCTACGGTCTGCGATAGTCCTCTC
CGGCCACCATCCACGCCT-CCCTGCCGTACATCGCCGAGGTTCACCGTGGCTCGCCGTCGCCATTGCCGCAATGTTGCTT
TGTTGAAGCATCTCTATTGTGGGCCGCTGCAAAACTTCTTCACTGATCGCA-CTCACAGTCTCGCCCCT-GTAGTTCGCC
GTCTTCATCGATTGCAGCTCGTCGCCGTCGCATCACGCCGTCCGAAAATAAGTTGATGCAACTCTGCATCCAGTATAACA
AATGTCATTTCCAGCATAATTGGGACGTGGTTCCAGTACGATGCAACCTCTCATATGCATCAAAT---------------
------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
S------------S-----------------------------------------------------SS--SSSSSSSSS
SSSS-----------S-S--------SS----------S---------SS----------------------S-------
--------------------------------------------------------------------------------
----S---------SSSSSS------S------------------------------------------S----------
---------------------------------S----------------------------------------------
-------S-------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-----------------------S----------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S----S---------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------S-----------------------------------------S--S---S----
--------------------------------------------------------------------------------
---------------S----------S-----------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-----------------------------------------------S--------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
-------------S-----------------S------------------------------------------------
-------------------------S----------------------------------------SSSS----------
--------------------------S-------------------S-----S----------------------S----
--------S-------------------------------------------S---------------------------
S-----------------------------------------S--S------S---------------------------
-S-----------S-----------S---------------------------S--------------------------
-------------------------S-----------------S---------------------S--------------
---------S------------S-------S-----------------------------------------------S-
-------S----------------S-------------------------------------------------------
---------------------S---------SS-S------------------S
>forward_633
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AGGGCATTTTGGACTCCTCG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_1613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AATCGAATGGCCAGATGCGA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>forward_634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GGGCATTTTGGACTCCTCGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_2876
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGCGC
GGCCATACCATTTAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
