>input_sequence_60554
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---------------------------------------------------------------ATGGCGGCTGACCTCCG
GCAGACGCCGGCGTGGTTCCTCTGGTTGGCCGTCCTCGGCGCCCTCCACGTTGTGGCGTTCTCGTCCCGCCTCCTCGTCC
ACCTTGCGCACTGCCTGCGCCGACCCAAGGACCTCCGCCGGTCCTATGGCGCGTGGGCAGTGGTCACCGGCCCGACGTCC
GGCATCGGGCGGTCCGTCGCCCTGGAACTCGCCCGCCGGGGCCTCAACCTCGTCCTCGTCGGCCTCGACGCCGCGGATCT
GCAGGAGGTCTCCGACACGATCAAGTCCCGTCACCCCGTGGAGACCAGGGCCGTGGTGTTCGACCTCTCCCTCGTCTCCA
CT-CCCCAAGGTACGTGTCTACGTGGTTCACTCAAGGTCAGC--ATATCGGAGCGCATGGCAACACGTGATTATCTTCGC
----------CGGTCGGCGGCGTGCAGGCGACGAGGCGCTGCGGCGGCTCCGGGACGTCGTGGAGGGGCTGGACGTGGGG
CTCCTCGTCAACAACGCCGGGGTGATGAGCCCTCGCGCGGCGTTCCTGCACGAGGCGGACGCGGAGGCACTGATACGCAT
GATCCGCGTGAACCTGTGGGCGACGACGGAGGTGACGGCGGCGGTGATCCCCGGCATGGCGACGAGGGGCAGGGGCGCCG
TGGTCAGCATGGGGTCGGCGACGTCGGAGGCCGTCGCCTCCTTCCCGCTCCACGCCGTCTACTCCGGCACCAAGCGGTAC
GTCGCGTGGCTCTCCAGGGGCCTCGCCGCCGAGTACGGGGGCGGAGGGGTCGACGTGCAGTGCCAGGCGCCGATGTTCGT
GGCGACGGCGATGATTGACGGCTTCTCGGCGGTCTGGCGCCCCGCGCCGCTGGTGCCCACCGCCGACGCCTACGCGCGCG
CGGCCGTGCGCTGGGTCGGGCGCGGCGGCCCGCTCTGCGTGCCCAGCCTCCGGCACCGGCTGCTGTGGCGCCTCCTCGCC
GCCGTGCCCGGCTGCGTGCAGGACTGGGCCTGCCTGCGCGAGGGCCTGCGGCAGAGGAAGACGTCCCGGAGCCGGGGATC
GTCGACGGCGTCGGCGTGCCATGCCAGCAACCGAGTAGGAAACTGTCTCACGAGTGAGTGA-------------------
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>chr7A_1_TraesCS7A01G527800
AAAAAAAGAATAGTTCTTTTCTGCCTCAACCGCTGTTTTGAACTGGATTTGTTCTTCCAAACCG-------GTTATAAGC
AGTTCTCTTTCATATTTCGTATCA--------------------------------------------------------
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-------------GTATCAGATTTTGGAAAGACATGAAAATTTAT--TTCTGTTTGCAGCATCCACTTGGCCTTTGGATA
GAGGGATATCTTGGTATATCAGTGTAGGCAGCGACAATCTTCTGAGGAACGTCGAAGACGACTACTTCGCCGCTCCACAA
ATTTCGCCAACCACACCCTGATCATACACTCGGAGTTAAGTCCAAATACTTTGACCGGAGAAGA--AAGTCCTCGGACAC
TTGTAAAGAGGAAACCG----TGTGAATTGCTGCGGAGTCTTAGCAGCGCCAGCATTCTGGCGGTTTTGGTTGAGAAGAT
GAAGATTTCGTCAGCCATTCTTTCGC----CGTACGTACATAGGAACCTGTCTAGATTTCTCAAACCATCTCATACTAGG
AACCTGTCTAGATTTC---------TCCAGTTTGTAAGTTGTTCGTCGATGAGCGGTGAGTGGGCTGAATTTGTCGGCCT
GCCTGTTGTTGTTGTGCATTACGCAGAATATTTCTCCTTGTGATTAGGCTTCAGAGTGGAACATCGATGCACAATTCGAT
TTCGATGCCATTGTTCTTCTTCCGAGAGAAAATTTCGGTTTCATTGTTGAGCTTAGTTAGTTTTGGTTGAGCAGATGATA
TGGTTACCATATGAGCTGCAGATGTATACATTTCAGTGGAGGC-----TGAAGCCTCCTGTTAAATCTTTAAATG-AAAT
TGCTGATGATATGGTTACCATATGAACTGAGGTCAAGATCGTGACATGTTGCTGCACACGTCTCGGCAAGTTACCTGCAT
CTCTGTTCCAACAAAATTAGTGGTTGGTTTCTGGAGTGTGTCCCCTGGACAATGGGCAGTTGTGTATGCACGGACAGTAC
TACTGTCTACTGCTGCTACAAAACTGGCACCAAACGCGTGAACGAGGGCCAGGAGAGTGGAGAATGGCGGCTGACCTCCG
GCAGACGCCGGCGTGGTTCCTCTGGTTGGCCGTCCTCGGCGCCCTCCACGTTGTGGCGTTCTCGTCCCGCCTCCTCGTCC
ACCTTGCGCACTGCCTGCGCCGACCCAAGGACCTCCGCCGGTCCTATGGCGCGTGGGCAGTGGTCACCGGCCCGACGTCC
GGCATCGGGCGGTCCGTCGCCCTGGAACTCGCCCGCCGGGGCCTCAACCTCGTCCTCGTCGGCCTCGACGCCGCGGATCT
GCAGGAGGTCTCCGACACGATCAAGTCCCGTCACCCCGTGGAGACCAGGGCCGTGGTGTTCGACCTCTCCCTCGTCTCCA
CT-CCCCAAGGTACGTGTCTACGTGGTTCACTCAAGGTCAGC--ATATCGGAGCGCATGGCAACACGTGATTATCTTCGC
----------CGGTCGGCGGCGTGCAGGCGACGAGGCGCTGCGGCGGCTCCGGGACGTCGTGGAGGGGCTGGACGTGGGG
CTCCTCGTCAACAACGCCGGGGTGATGAGCCCTCGCGCGGCGTTCCTGCACGAGGCGGACGCGGAGGCACTGATACGCAT
GATCCGCGTGAACCTGTGGGCGACGACGGAGGTGACGGCGGCGGTGATCCCCGGCATGGCGACGAGGGGCAGGGGCGCCG
TGGTCAGCATGGGGTCGGCGACGTCGGAGGCCGTCGCCTCCTTCCCGCTCCACGCCGTCTACTCCGGCACCAAGCGGTAC
GTCGCGTGGCTCTCCAGGGGCCTCGCCGCCGAGTACGGGGGCGGAGGGGTCGACGTGCAGTGCCAGGCGCCGATGTTCGT
GGCGACGGCGATGATTGACGGCTTCTCGGCGGTCTGGCGCCCCGCGCCGCTGGTGCCCACCGCCGACGCCTACGCGCGCG
CGGCCGTGCGCTGGGTCGGGCGCGGCGGCCCGCTCTGCGTGCCCAGCCTCCGGCACCGGCTGCTGTGGCGCCTCCTCGCC
GCCGTGCCCGGCTGCGTGCAGGACTGGGCCTGCCTGCGCGAGGGCCTGCGGCAGAGGAAGACGTCCCGGAGCCGGGGATC
GTCGACGGCGTCGGCGTGCCATGCCAGCAACCGAGTAGGAAACTGTCTCACGAGTGAGTGAAGTGACGTGACTCCTGGCC
CCCCACTCTCACTTGTCACTCACGAGGACTCGATGGAGTGATAGGAATAGCGCAACCGTTTTCATTTTGATTAAGCCATA
AAAATATTCGGCTGAAGCAACCTTGTATGCGGCTCTTAATAAAAAGTTGCTAAAATGACATGTGTACCGTCGACTAATGA
AACTAAACGAGGCCTTCATTGGATTTCATTTCCTTACTTCCCAAGAAAACACACGTCGCACCAATATTATTACCAAAACC
TCAACTAATTAAAGAAAAATTCTTGTCTTCCTCTACCCATGCCCGAATCAAATTAAATCTTACCAAAAATCTGAAATATG
GTGGGTGCAAGATTTATGTCACACACGATTGGTGTTGAACCAGTAAAATATGTATGCCCCCCGCTGCAATGCACGTGCAA
TTAGCTAGTGATTGTAATGCATGAGTTATTGAGGAACACACGAAGGACTGGTAACAAGTTCCAACATAATTATTTGAATG
GACTTGATGAAACAACGGCATCCATGATATAT-CAATGCAAAATTCAAAGGTAAGCAAAATAACAACGAATTGAGATAGT
GCACTGACCTTCGACGCAACAAATTTGTACTTGGTTGTTTCACCTAATTGCAAAACAAAGCAGAGAGGAACAACTCCCAC
AACTTAAGGCTTTGACTTTAGAGGAGGTGACACCAACAAAGCACATGTTGCACCACGTTCATGCTTTGCACCTACACAAA
ATACATGCAAGCAATAGCGT-GACATTGGCAACCATGGGTACCAAAATCATTAGAATGAAGGACATTATGAGAGACCAAT
TGCAAAATAGCAAACCGAGGACCGGATGAGTAAAGAAGGCACGGGATAAGGATAGTAAAAAAATAACCATCGTATGTTCT
ATCAAGGTCATGGAATGGAGCAACGTTCGGCTTGGATCACGCGTATCACCCCGACAAGGAACAACTGCTCCACCACAAGC
GTCGTGGCCGTGGCAACGAGTAG
>chr7D_11
----------TAGTTCTTTTCTGCTCCAACTGCTATTTTGAACTGGATTTGTTCTTCCAAACCTGTTAATTGTTATAAGC
AGTTCTCTTTCATATTTCGTATCAATAGCAGATTTAGGGAAGACCTGAAAATTTATTCTTCTGTTATTACTCCACTAATT
CTCACTGATATTCACAAATACTCCGTCCGTAGCTTGAAAAACGATCTTATATTGTGGGACGGAGGGAGTAGAAAAGAAAA
ATGTTGTAGTTCTTTTCTGCCCCAGCCGCTGTTTTGAACAGAATTTGTTCTTTCAAAGCTGTTATAAGCAGTTCACTTTC
ATATTTCGTATCAGTATTTGATTTTGGAAAGACCTGAAAAATTATTCTTCTGTTTGCAGCATCCACTTGGCCTCTGGATA
GAGGAATATCTTGGTATATCAGCGTAGGCAGCGACAATCTACTGAGGAACGTCGAAGATGACTACTTTGCCGCTCCGCAA
AGTTCGCCCGCCACACCCTGATCGTACATTCAGAGTCAAGTCCAAATACTTTGACCGCAGAAGAGAAAGTCCTCGGTCAC
TTGTACAAAAAGGAAGAGAGATGTGAGTTGCAGCGGAATCTTGGCAGCGCCAGCATTCTGGCGGTTTTGGTTGAGAGGAT
GAAGATTTCGTCAGCCATTCTTTCGTCGTTCGCACGTACATAGGAACCTGTCTAGATTTATCCAAACAATTCATACTAGG
AACAGGATACGCCCTGCCGTCCAATTCCAGTTTGTAAGTTGTTCGTCGATGAGCGGTGAGCGGGCTGAATTTGTCGGCCT
GCCTGTTGTTGT---GCATTACGTAGAATATTTCTCCTTGTGATTAGGCTTGAGGGCGGAGCATCGATGCACGGTTCGAT
TTCGACGCCATTGTTCTTCTTCTGAGAGAAGTTTTCGGTTTCATTGTTGAGC----TTAGTTTTGGTTGACCAGATGTAT
ACA----------------------------TTCAGTGGAGGCTCCATTGCAGCCTCCTGTTAATGTTAAATCTTTAACT
TGCTGATGATATGGTTGCCATATGAGCTGAGGTCAAGATTGTGACATGTTGCTGCACACATCTCGGCAGGTTGCCTGCAT
CTCTGTTCCAACAAAATTAGTGGTTGGTACTTGGAGTGTGTCCCCTGGACCATGGGCAGTTGTCTATGC-----------
-------TACTGCTACTACAAAACTGGCACCGAACGCGTGAACGAGGGTCAGGAGAGTGGAGAATGGCGGCTGACCTCCA
GCAGACGCCGGCGTGGTTCCTCTGGCTGGCCGTCCTCGGCGCCCTCCACGTCGCGGTGCTCTCGTCTCGCCTCCTCGTCC
ACCTCGCCCACTGCGTGCGCCGACCCAAGGACCTCCGCCGGTACTACGGAACGTGGGCCGTGGTCACCGGCCCGACGTCC
GGCATCGGCCGGTCCGTCGCCCTGGAGCTCGCCCGCCGGGGCCTCGACCTCGTCCTCGTCGGTATCGACGCCGCGGACCT
CCGGGAGGTCTCCGACGCGGTCATGTCCCGTCACGCCGTGCAGACCAGGACCGTGGTGTTCGACCTCTCGCTCGTCTCCA
CCCCCCCAAGGTACC-----ACGTAGTTTACACAGGTTTGGGGTATATCGGAGCGCATGGCGACGGCCTGCAGGCACTTG
ATGATCCTCTCGGCCGGCGGCGTGCAGGCGACGAGGCGCTGCGGCGGCTCCGGGACGTCGTGGAGGGGCTGGACGTGGGC
GTCCTCGTGAACAACGCCGGGGTGATGAACCCGGGCGCGGCGTTCCTGCACGAGGCGGACGCGGAGGCACTGATACGCAT
GATCCGCGTGAACCTGTGGGCGACGACGGTGGTGACGGCGGCGGTGATCCCGGGCATGGCGGCGCGGGGCAGGGGCGCCG
TGGTCAGCATGGGGTCGGCGACGTCGGAGGCCGTCTCCTCCTTCCCGCTCCACGCCGTCTACTCCGGCACCAAGCGGTAC
GTCGCGGTGCTCTCCGGGGGCCTCGCCGCCGAGTACGGGGGCAGAGGGGTCGACGTGCAGTGCCAGGCGCCGATGTTCGT
GGCGACGGCGATGGTCGCGGCCTTCTCGGCGCTCTGGCGCCCCGCGCCGCTGGTGCCCACCGCCGACGCCTACGCGCGCG
CGGCGGTGCGCTGGGTCGGGCGCGGCGGCCCGCTCTGCGTGCCCAGCCTCCGGCACCGGCTGCTGTGGTGCCTTCTTGAC
GTCGTGCCCGGCTGCGTGCAGGACTGGGCCTGCCTGCGCGAGGGCCTGCGGCAGAGGAAGACGTCCCGGAGCCGGCGATC
GTCGACGGCGTCGGCGTGCCATGCCAGCAACTGAGTAGGAAACTGTCTCACGAGTGAGTGAAGTGGCGTGATTCCTGGAC
CCACTCTC------------------------------------------------------------------------
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>chr7B_11
----------TAGTTCTTTTCTGCCCCAACCGCTGTTTTGAACTGGATTTGTTCTTCCAAACCTGTTA-------TAGGC
AGTTCTCTTTAACATTCCATATCAGTATCAGATTTAGG------------------------------------------
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---------------------------AAAGACCTGAAAAATTATTCCTCTGTTTGCAGCATCCACTTGGCCTCTGGATA
GAGGGATATCTTGGTATATCAGCGTAGGCAGCGACAATCTACTGAGGAACGTCGAAGACGACTACTTCGCCGCTCCACAA
AGTTCGCCAACCACACCCTGATCATACACTTGGAGACAAGTCCAAATACTTTGACCGGAGAAGA--AAGTCCTTGGACAC
TTGTAAAGAGGAAACCG----TGTGAGTTGCGGCGGAGCCTCAGCAGCGCCAGCATTCTGGCGGTTTTGGTTGAGAAGAT
GAAGATTTCGTCAGCCATTCTTTCGTCGTTCGCACGTACATAGGAACCTGTCT---------------------------
---AGGATAGGCCCTGCTGTCCAATTCCAGCTTGTAAGTTGTTTGTCGATGAGCGGTGAGCGGGCTGAAGTTGTCGGCCT
GCGTGTTGTTGT---GCATTGTGTAGAATTTTTCTCCTTGTGATTAGGCTTCAGGGTGGAACATCAATGCGCGATTCGAT
TTCGATGCCGCCGTTCTTCTTCTGAGAGAGAATTTCGGTTTCATCGTTGAGCTTAATTAGTTTTGATTGAGCAGATGTAT
ACA----------------------------TTCAGTGGAGGC-----TGCAGCCTCCTGTTAATGTCAAATCTTTAAAT
TGCTGATGATATTGTTGCCATATGAG-----------ATTGTGACATGTTGCTGCACATATCTCGGCAGGTTACCTGCAT
GTCTGTTCCAACAAAATTAGCGGTTGGTATTTGGAGTGTGTCTATGCACGGACAG-----------TGC-----------
-------TACTGCTACTACAAAACTGGCACCAAACGCGTGAACGAGGGCCAGGAGAGTGGAGAATGGCGGCTGACCTCCG
GCAGGCGCCGGCGTGGTTCGTCTGGCTGGCCGTCCTCGGCGCCCTCCACGTCGCGGCGCTCTCGTCCCGCCTCCTCGTCC
ACCTCGCGCACTGCCTGCGCCGTCCCAGGGACCTCCGCCGGCGCTACGGCGCGTGGGCCGTGGTCACCGGCCCGACGTCC
GGCATCGGGCGGTCCGTCGCCCTGGAGCTCGCCGGCCGGGGCCTCAACCTCGTCCTCGTCGGTCTAGACGCCGCGGACCT
CCGGGAAGTCTCTGACACGATCACCTCCCGCCACCCCGTGGAGACCAGGACCGTGGTGTTCGACCTCTCCCTCGTCTCCA
CT-CCCCAAGGTACC-----ACGTAGTTCACTCAGGTTTGGGGTATGTCGGAGGGCATGGCGACGGCCTGCAGGCACTTG
ACGGTCCTCTCGGCCGGCGGCGTGCAGGCGACGAGGCGATGCGGCGGCTCCGGGACGTCGTGGAGGGGCTGGACGTGGGC
GTCCTCGTGAACAACGCCGGGGTGATGAGCCCTCGCGCGGCGTTCTTCCACGAGGGCGACTTGGAGGCGTACGTGCGCAT
GATCCGCGTGAACCTGTGGGCGCCGACGGAGGTGACGGCGGCGGTGATCCCGGGCATGGCGGCGCGGGGCAGGGGCGCCG
TGGTCAGCATGGGGTCGGCGACGTCGGAGGCCGTCGCCTCCTTCCCGCTCCACGCCGTCTACTCCGGCACCAAGCGGTAC
GTCGCGGTGCTCTCCGGGGGCCTCGCCGCCGAGTACGGGGGCCGAGGGGTCGACGTGCAGTGCCAGGCGCCCATGTTCGT
GGCGACGGCGATGATCGCCGACTTCTCGGCGGTCTGGCGCCCCGCGCCGCTGGTGCCCACCGCCGACGCCTACGCGCGCG
CCGCGGTGCGCTGGGTCGGCCGCGGCGGCCCGCTCTGCGTGCCCAGCCTCCGGCACCGGCTGCTGTGGTGCCTCCTCGCC
GCCGTGCCCGGCCGCGTCCAGGACTGGGCCTGCCTGCGCGAGGGCCTTCGGCAGAGGAACACGTCCCGGA------GATC
GTCGACGGCGTCCGC-----------------------------------------------------------------
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>chr7B_2526
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-TAGCGAGTGATTGTAATGCGTGAGTTATTGAGGAAGATACAAAGGAC---TAACAAGTTCCAACATATTTATT-GAATG
TACTTCATGAAACAACGGCATCCATGATAATAACAATGCAAAATTCGAAGGTAAGCAAAATAACAACGAATTGAGATAGT
ACACTGGCCTTCTATGCAACAAATTTGTACTTGGTTGTTTCACCTAACTGCAAAATAAAAGAGAGAGGAACAACTCACAC
AACTTAAGACTTTGACTA------------------------------------ACGTTCATGCTTTGCACTCA---AAA
ATACATGCAAGCAATAGTGCAGACATTGGCAAACATGGGTACCAAAATCATTAGAATGAAGGACATCACGAGAGGCCAAT
TGCGAAATAGCAAACCGAGGACCGGATGAGTAGAGAAGGCACGGGATAAGGATAGTACAAAAAAAACCATCATATGTTCT
ATCAAGGTCACGGAATGGAGCGGCGGTCGGCTTGGATGGCGCGTATTGCCCCGACAAGGAACAACTGCTCCACCACAAGC
GTCGTGGTCGTGGCAACGAGTAG
>SNPs
SSSSSSSSSS---------------S-------------------------------------S----------------
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-----------------SS--------------S------S--------------------------------S------
----------------------S-----------------S---------------------------------------
-S----------------------------------S-------------------------------------------
--------------------------S----S------------------------------------------------
-------------------------S------S--------------------------S--S--S--SS----------
---SS-SSSS-SSS-S--------------------------------------------S-------------------
------------SSS--------S------------------------------S-----------------S-------
----------------------S--------------------------------S---------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-------------SSS-SS-SS-S-----
----------------S--------S-------------S-------------------S--------S-----------
----------------------------S-S-------------------S------------S-----SSSSSSSSSSS
SSSSSSS-------S-----------------------------------------------------------------
-------------------------S-------------------------S-S----S---------------------
----S-------------------------------------S---S-----------S---------------------
--------------------------S-----------------------------------S--------------S--
S-S--------------------S-------------------------S------------------------------
--------------SSSSSS----S---------S-S-SS-S-------------------S--SSSSSSSSSS-SSSSS
-------------S-----------------------------------------------------------------S
S-------S-----------------------------------------------------------------------
---------------------------------------------------S---------S--S---------------
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------SS-------S--------------------------S-------------------------------------
---------------S-S--S-----------------------------------------------------------
----S---------------------------------------------------------------S-----------
---------------------------------------------------------------------------S----
-------------------------------S---------------------------------S-----S------S-
--S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----S--------------S---------------S-S--S------SSS-----------------S-----S-----
S----S-----------------------SSS--------------S---------------------------------
S-----S-----S-S--------------------------------S-------S---SS---------------S---
--------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SS-SSS---
-----------------S-S------------S---------------------------------S-S-----S-----
---S----------------------------S------------------------S-----S-------S--------
----------S----------SS--S-----------SS-------SS--------------------------------
-------S---------------
>forward_482
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--------------------------------------------------------------TACTTCGCCGCTCCACAA
AT------------------------------------------------------------------------------
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>reverse_1668
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-------------------------------------------------------------------TGATTATCTTCGC
CGGTCGG-------------------------------------------------------------------------
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>forward_1619
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-------------------------------------------------------------------------------C
ACTCCCCAAGGTACGTGTC-------------------------------------------------------------
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>reverse_3089
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------------------------------------------------TGCACCACGTTCATGCTTTG------------
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