>input_sequence_60552
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-------ATTCTAGTTTAGTTCTTCAGCTCTCAACGTTTACTCGAGATAATCAGCCGACCCTGCTCAGATCAGCCGCTTG
TTTCGGCACCAGATTTGAAAAGACTGACTCATAGATGGAGTGTGGTTTGAAATCCCTGAGCAGCAGCTCCTCCTCCGCAG
CGTCGCCTTCTCTGATGATGGCCTGCAGGCCGTTCCCGCAGCCGCCGCTCCTGCCCCTGCCGCAGCACCTCCAGGCCTCG
CCGGCACCGGCAGGCCGCCAGGTCGACCT---CCCGCGCGCCAACAAGAGCCCCAAGAAGCCGGCGAGCGGGGCGGCATC
GGCGCCCATCGTGGTAGCGGCGCCGCCTATGTCGGCGTGGGCG---------TCGATGGACTCGATGTACTCGGTGTCGC
CGCCGCCGAGCAGCGTCCCGATGCCGACGTCGCTGCTGCTGGCCGCCGGCGCCGGGCGGAAGAAGGTGCCGACCCCGTGC
GCTGTGCAGGTGGCTGGCGCTGGCGGGGGCGTGGACGTCGGCGCCACCGACGAGCTCCGCCGCCTGCTCCGGCTCTAGCA
AGGCGAGGGAGCT--------------GATGGCAAGGCGAGGGAGCTGCGGATGGATGTGGCCCGTTC--ATGGATCGTG
GGTGGTTTTTTTTACCGTGCCCGCCCGAGACAGAATCCTGACGAGG-TTGCTCCTCCGAGCTGTAACAACAATGTACTGA
TGCAGTATTATTACTGCTACTAATGTTGATTTCATTTCAGTTCCTTGTGTAGTTGTATGTTGTGTGCCTGGGTCACGATC
TCCATGCGTGACGCGTGAGAAGTTTATACGCGTTCAGTTCGCGTGCTTGTGTTGCAACGCAGAAATTACAACCAAAGTTC
ATAGTACGAACTTGAGAAGGGAG-------------------------------------CAGTTCGATTCACAGGATCC
GGGTAAAACTGACGCATTATTTCAGCGCCAGGCCACCAATCGTGTCCCCCAAGTACACTGCACTGGGAGATTCC------
-----------------------------TTTCCCTTGTTTACGGCACATGATATCTCCTCGAGATCAAACAATG-----
GCGCAAAAGCAGCTCCGAATCAGCT--CTGATAGCACGCGACAGCAGAATATGCCCTCAAAGATACGCCATGTGCA----
CCATCTAACACTTGTTTAGATAAA--------------------------------------------------------
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>chr5B_1_TraesCS5B01G331000
AATTAATATATTTATTAATATAATAA-TTAAAAAACAGTAACTCAGCGCGCGCAGCCTAGATGGGCCAACCGCCGGCCCA
ACGTCACGGGACTAGTATAAAAAGCTTCTCGCCTGTTC---------TCTGCCGTGTGCCCAGCTGTGGCGTGGTGGCGA
GCGCGAGTCGCTGCTAGACGGCCGGTCGCCGGTTCGAATCCGGCAGCCATCAAATTTTTAGTTGGTCTATTTATTTGTTT
AAGCCGACG--------------------------------------------------AAAATTTTCAAACAAGTCCCG
CTTCGGCAATGTAAA-TTACGAACG--GAAAAAAAGCCTCTCATACGAGCCCATTTTCTGTAAAATAATTGGGTATTTAT
GTAATTACTTACAAAGTAAGGGAGA-TTTTTGCAAAAAACATGCCACCTCAGCACCTGACTAGCGGG-CCCTGCCAGTCA
GATACACCGTCAATGCATGTTTATACGTTGTTTAGATCTTTTTGTAACGATTAGCCCCAGACTTGGTACTGACATGTAAA
AATTACCAAAAATGGTACCAATCCGCATGTAATGTCCCAATTGTGGAACTTTTGTGCAATTAACTCCGCACGGTACGTTA
ACGTACTACGTACGCGCTCCCACCCACCGGTCCACCC-----------CCACCACCGCAAGTGTCCGTTGGGAGGAGAGG
AGGGGAGCGGGTGGTACCGTACCGGCCGACCGACCGCTGCCGCCGCGGCTCTATATAATGGCAGGGGCGCCTGGCCACGA
CCATAACGGATACCTTACCTCTACTGACTGCTTGGCACGATACCATTATCTTCTTCCCTACCCTTCC-TTGGCTCAGCAG
C-----------------TCTTCTTCGGCTCACCTTTCTGCCTTTCTTTCTCTTTCCTGTTCAAGTTTAGCTAGCTTACC
AGGGC------------T---GCATCTCGATCTGTTTT-AGTTGATCTAGATCTGCAAC----CAAGCAAGCTTCTCCAG
---CTTATTTTGCTTTT---------CATACATACATTCTACATCTCTCCGCCTGTTTTTGTTGGTTGGAGCTT-GATTT
CCTTTGCATTCTAGTTTAGTTCTTCAGCTCTCAACGTTTACTCGAGATAATCAGCCGACCCTGCTCAGATCAGCCGCTTG
TTTCGGCACCAGATTTGAAAAGACTGACTCATAGATGGAGTGTGGTTTGAAATCCCTGAGCAGCAGCTCCTCCTCCGCAG
CGTCGCCTTCTCTGATGATGGCCTGCAGGCCGTTCCCGCAGCCGCCGCTCCTGCCCCTGCCGCAGCACCTCCAGGCCTCG
CCGGCACCGGCAGGCCGCCAGGTCGACCT---CCCGCGCGCCAACAAGAGCCCCAAGAAGCCGGCGAGCGGGGCGGCATC
GGCGCCCATCGTGGTAGCGGCGCCGCCTATGTCGGCGTGGGCG---------TCGATGGACTCGATGTACTCGGTGTCGC
CGCCGCCGAGCAGCGTCCCGATGCCGACGTCGCTGCTGCTGGCCGCCGGCGCCGGGCGGAAGAAGGTGCCGACCCCGTGC
GCTGTGCAGGTGGCTGGCGCTGGCGGGGGCGTGGACGTCGGCGCCACCGACGAGCTCCGCCGCCTGCTCCGGCTCTAGCA
AGGCGAGGGAGCT--------------GATGGCAAGGCGAGGGAGCTGCGGATGGATGTGGCCCGTTC--ATGGATCGTG
GGTGGTTTTTTTTACCGTGCCCGCCCGAGACAGAATCCTGACGAGG-TTGCTCCTCCGAGCTGTAACAACAATGTACTGA
TGCAGTATTATTACTGCTACTAATGTTGATTTCATTTCAGTTCCTTGTGTAGTTGTATGTTGTGTGCCTGGGTCACGATC
TCCATGCGTGACGCGTGAGAAGTTTATACGCGTTCAGTTCGCGTGCTTGTGTTGCAACGCAGAAATTACAACCAAAGTTC
ATAGTACGAACTTGAGAAGGGAG-------------------------------------CAGTTCGATTCACAGGATCC
GGGTAAAACTGACGCATTATTTCAGCGCCAGGCCACCAATCGTGTCCCCCAAGTACACTGCACTGGGAGATTCC------
-----------------------------TTTCCCTTGTTTACGGCACATGATATCTCCTCGAGATCAAACAATG-----
GCGCAAAAGCAGCTCCGAATCAGCT--CTGATAGCACGCGACAGCAGAATATGCCCTCAAAGATACGCCATGTGCA----
CCATCTAACACTTGTTTAGATAAACCAACCTGTCCCGTGTACAGTAGACGAGTCACAAAATAGCGACGGCTTTGTAGGTT
---TGTTGCTCAGGTAAAACGAAAACAAATTCTCTCGTCAGCAAAGGAGCAGCAGCGACGCAAGGGAGACAATGAAGTG-
--TGAATTC-----------------------------------------------------------------------
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---------------------------------------------TGTTTTTCAAAATGACTGACCACAATTCACAATTA
CTGAGGTATGATGCCCTACAAAGAATTGC---TACTA---CGACCTGGAACCAACCCCTTACGACATTCCATTATTCTCA
CCAAAACGAAATGAACAAATAAAGGTAGCACACAACGCAC--TCACTCTCTCTGTG----TGATATGATATTACAGCCTA
CTAGTATACAGAAGTGCTGGATCTCCAGCTTGACAAGGATCAATTATCGCAGAACGCGCGGAGGGTTTCGTCCAGGGCTT
TCCTGTCGTACTCGCCGGTGAAAACGCAGCCTCCCAGAGGTCCTTTCAGAAGGATGAGCCTCAGCAATCCGTCCGCGACC
TTCTTGTCGACCTGATGCGCCATGCAAGGAATCATCAATCATTAAGATTTTATT---TCAATGCTAAAAAGGAACAAT--
TGAGATGTCCAAGCATATCAGCCTGCTTCTGCCAATATT-AAGGTACTTACAGCCATGATGTTCTTGAACTTCTCCACCG
TCATGCCCTTTGGTGGTGTCACGGGAAGCTTGGCTTGATCTAGTATGTCAAATGTCCGTTTCTTGATGGACTCGTCTATC
CAGCCCAGGCGGTAAGACATGTCAGCTGCCATAACCTATCGTAGTGCCAACACGGAAACAGAAGACGACGATAAGGAAAC
CAGATAAAGT---GATTAAGAGGT-GTATCAAACATTCAACTGGTCTTACCGTTCCAGCAGCAACAGCTTCCCCATGGAG
CCATTCTCCATAGCCAAGCCCTGTTTCTATAGCCTGGCAATTAAATGAAACGATTAT-----AGTGAGTAACATGTATAC
TTCACAAACAATAAGGTTGCTATCACATTCCCATAAAATATCGAGTTGAGGTT
>chr5A_1
AATTAATATATTTATTAATATAATAA-TTAAAAAACAGTAACTCAGCGCGCGCAGCCTAGATGGGCCAACCGCCGGCCCA
GCGTCACGGGACTAGTATAAAAAGCGTCTCGCCTGTTC---------TCTGCCGCGTGCCCAGCTGTGGCGTGGTGGCTA
GCGTGAGTCGCTGCTAGACGGCCGGTCGCCGGTTCGAATCCGGCAGCCTTCAAATTTTTAGTTGGTCTATTTATTTGTTT
AAGCCGACGAAAATTTTCAAACAAGTCCCGCTTGGTCTATTTATTTGTTTAAGCCGACGAAAATTTTCAAACAAGTCCCG
CTTCGGCAATGTAAA-TTACGAACG--AAAAAAAAGCCTCTCATACGAGCCCATTTTCTGTAAAGTAATTGGGTATTTAT
GTAATTACTTACAAAGTAAGGGAGA-TTTTTGCAAAAAACATGCCACCTTAGCACCTGACTAGCGGG-CCCTGCCAGTCA
GATACACCGTCAATGCATGTTTATACGTTGTTTAGACCTTTTTGTAACGATTAGCCCCAGACTTGATACTGACATGTAAA
AATTACCAAAAGTGGTACCAATCCGCATGTAATGTCCCAATTATGGTACTTTTGTGCAATTAACTC--------------
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>chr1B_1
AATTAATATATTTATTAATATAATAA-TTAAAAAACAGTAACTCAGCGCGCGCAGCCTAGATGGGCCAACCGCCGGCCCA
GCGTCACGGGACTAGTATAAAAAGGGTCGCGCCTGTTC---------TCTGCCGCGTGCCCAGCTGTGGCGTGGTGGCTA
GCGCGAGTCGCTGCTAGACGGCCGGTCGCCGGTTCGAATCCGGCAGCCTTCAAATTTTTAGTTGGTCTATTTATTTGTTT
AAGCCGACGA--------------------------------------------------AAATTTTCAAACAAGTCCCG
CTTCGGCAATGTAAA-TTACGAACG--GAAAAAAAGCCTCTCATACGAGCCCACTTTCTGTAAAATAATTGGGTATTTAT
GTAATTACTTACAAAGTAAGGGAGA-TTTTTGCAAAAAACATGCCACCTCAGCACCTGACTAGCGGGCCCCTGCCAGTCA
GATACACCGTCAATGCATGTTTATACGTTGTTTAGACCTTTTTGTAACGATTAGCCCCAGACTTGGTACTGACATGTAAA
AATTACCAAAAGTGGTACCAATCTGCATGTAATGTCCCAATTGTGGTACTTTTGTGCAATTAACTCC-------------
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>chr1B_1
AATTATG-TATTTATTAATATAATAA-TTAAAAAACAGTAACTCAGCGCGCGCAGCCTAGATGGGCCAACCGCCGGCCCA
GCGTCACGGGACTAGTATAAAAAGCGTCTCGCCTGTTC---------TCTGCCTCGTGCCCAGCTGTGGCGTGGTGGCTA
GCGCGAGTCGCTGCTGGACGGCCGGTCGCCGGTTCGAATCCGGCAGCCTTCAAAGTTTTAGTTGGTCTATTTATTTGTTT
AAGCCGACGA--------------------------------------------------AAAATTTCAAACAAGTCCCG
CTTCGGCAATGTAAA-TTACGAACG--AAAAAAAAGCCTCTCATACGAGCCCATTTTCTGTAAAATAATTGGGTATTTAT
GTTATTACTTACAAAGTAAGGGAGTTTTTTTGTAAAAAACATGCCACCTCAGCACCTGACTAGCGGG-CCCTGTCAGTCA
GATACACTGTCAATGCAGGTTTATACGTTGTTTAGACCTTTTTGTAATGATTAGCCCCAGACTTGGTACTGACATGTAAA
AATTATCAAAAGTGGTACCAATCAGCATATAATGCCCCAATTATGATATTTTTGTGCAATTAACTCC-------------
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>chr2A_1
AATTAATATATTTATTAATATAATAA-TTAGAAAACAGTAACTCAGCGCGCGCAGCCTAGATGGGCCAACCGCCGGCCCA
GCGTCACGGGACTAGTATAAAAAGCGTCTTGCCTGTTC---------TCTGCCGCGTGCCTAGCTGTGGCGTGGTGGCTA
GCGCGAGTCGCTGCTAGACGGCCGGTCGCCGGTTCGAATCCGGCAGCCTTCAAATTTTTAGTTGGTCTATTTATTTGTTT
AAGCCGACGA--------------------------------------------------AAATTTTCGAACAAGTCCCG
CTTCGGCAATGTAAA-TTACGAACG--GAAAAAAAGCCTCTCATACGAGCCCATTTTCTGTAAAAAAATTGGGTATTTAT
GTAATTACTTACAAAGTAAGGGAGA-TTTTTGCAAAAAACATGCCACCTCAGCACCTGACTAGCGGG-CCCTGCCAGTCA
GATACACCGTCAATGCATGTTTATACGTTGTTTAGACCTTTTTGTAACGATTAGCCCCAGACTTGGTACTGACATGTAAA
AATTATCAAAAGTGGTACCAATCCGCATGTAATGTCCCAATTGTGGTACTTTTGTGCAATTAACTCC-------------
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>chr3B_1
AATTAATATATTTATTAATATAATAA-TTAAAAAACAGTAACTCAGCGCGCGCAGCCTAGATGGGCCAACCGCCGGCCCA
GCGTCACGGGACTAGTATAAAAAGG---------GTTC---------TCTGCCGCGTGCCCAGCTGTGGCGTGGTGGCTA
GCGCGAGTCGCTGCTAGACGGCCGGTCGCCGGTTCGAATCCGGCAGCCTTCAAATTTTTAGTTGGTCTATTTATTTGTTT
AAGCCGACGA--------------------------------------------------AAATTTTCAAACAAGTCCCG
CTTCGGCAATGTAAA-TTACGAACG--GAAAAAAAGCCTCTCATACGAGCCCATTTTCTGTAAAATAATTGGGTATTTAT
GTAATTACTTGCAAAGTAAGGGAGA-TTTTTGCAAAAAACATGCCACCTCAGCACCTAACTAGCGGG-CCCTGGCAGTCA
GATACACCGTCAATGCATGTTTATACGTTGTTTAGACTTTTTTGTAACGATTAGCCCCAGACTTGGTACTGACATGTAAA
AATTACCAAAAGTGGTACCAATCCGCATGTAATGTTCCAATTGTGATACTTTTATGCAATTAACTCC-------------
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>chr3B_6
-----ATATATTTACTAATATCATAATTTAAAAAACAGTAACTCAGCGCGCGCAGACTAGATGGGCCAATCGCCGGCCCA
GCGTGACGGATCTACTATAAAAACC---------GTTTCGCCTGGTATCTGACGCGTGACCTAAGTTGGCGTTGTGGCTA
GCGCGGGTCGCTGCTGCACGGTGCGTCGCTGGTTCGAATCCTGCCGTCTTCAAATTTTTAGTTGTTCTATATATTTGTTT
AAGCCAACGA--------------------------------------------------AAAATTTCAAACAAGT-CCG
CTTCGGTAATGTAAAATTACGAACCAAAAAAAAAGGCCTCTCATACGAGCCCATTTTCTGTAAAATAATTGGGTATTTAT
GTGATTACTTACAAAGTAAGGGAGTA-TTTTGTAAAAAATATGCCACGTCAACACCTGACAGCCGGG-CCCTGCCGGTCA
GATACACCGTCAATACATTTTTATACATGGTTTAGACCTTTTTGTAACGACTGGCCTCAC-------ACTTACATGTAAA
AATTAACAAAAGTGGTATCAATCCGCATGTAATGCCTCAATTATGATACTTCTGTGCAATTAACTCC-------------
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>chr5D_562
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------------------------------------------------------------------CGCACGGTACGTTA
ACGTACTACGTACGCGCTCCCACCCA--------CCC-----------CCACCACCGCAAGTGTCCGTTGGGAGGAGAGG
AGAGGAGCGGGTGGTACCGTACCGGCCGACCGCTGCCTGCCGCCGCGGCCCTATATAATGGCAGGGGCGCCGGGCCACGG
CCACAACGGATACCTTACCATTA----TCTT--------------------------CTTCCCTTCCCTTGGCTCACCAG
CTCTGCTCGTCTTTTCTTTCTTCTCCGGCTCACCTTTTGGCCTTTCTCT---TTTCTTTTTCAAGTTTAGCCATCTTACC
AGGGCCGCTAGCTGCTGT---GCATCTCGATCTGTTTT-AGTCGATCCAGATCTGCATCCGAGCAAGCAAGCTTCTCCAT
---TTTTCTTTGGCTTTTGATACACACATACATACATTCTACATCTCTCCGCCTGTTTTTGTTGGGTGGAGCTT-GATTT
CCTTTGCATTCTAGTTTAGTTCTTCAGCTCTCGACGTTTACTCGAAATAACCAGCCGACTCCGCTCAGATCAGCCGCTTG
TTTCGGCGCCAGATTTGCAAAGACTGACTCACAGATGGAGTGTGGTTTGAAATCCCTGAGCAGCAGCTCCTCCCCCGCAG
CATCGCCTTCTCTGATGATGGCCTGCAGGCCGTTCCCGCAGCCGCCGCTCCTGCCCCTGCCCGCGCACCTCCAGGCCTCG
CCGGCACCGGCAGGCCGCCAGCGCCAGGTCGACCCGCGCGCCAACAAGAGCCCCAAGAAGCCGGCGGGCGGGGCGGCATC
GGCGCCCATCGTGGTAGCGGCGCCGCCTATGCCGGCGTGGACGTCGATGGACTCGATGTACT---------CGGTGTCGC
CGCCGCCGAGCAGCGTCCCGATGCCGACGTCACTGCTGCTGGCCGCCGGCGCCGGGCGGAAGAAGATGCCGACCCCGTGC
GCCGTGCAGGTG------GCTGGCGGGGGCGTGGACGTCGGCGCCACCGACGAGCTCCGCCGCCTGCTCCGGCTCTAGCC
ACCGCTGCTGTTGCTGTGTGATGGGCCGATGGCAAGGCGAGGGAGCTGCGGATGGATGTAGCCCGTTTATATGGATCGTG
GGTAG-TTTTTTTACCGTGCCCGCCCGAGACAGAATCCTGACGAGGTTTGCTCCTCCGAGCTGTAACAACAATGTACTAA
TGCAGTCTTATTACTGCTACTAATGTTGATTTCTTTTCAGTTCCTTGTGTAGTTG--TGTTGTGTGCCTGGGTTACGATC
TCCATGCGTGATGCGTCAGAAGTTTATACGCCTTCAGTTCGTGTGCTTGTGTTGCAACGCAGAAATTACGTCCAGATTTC
GGGGTATGAACTTGAGAAGGAACAGTTCTTTTCTTTTTGAACTTGATTGATGAGAATGAACAGTTCGATTCATAGGATCC
GGGTAAAACTGACGCATTATTTGGACGCCAGGCCACCAATCGTGTCCCCCGAGTACACTGCACCGGGAGATTCC------
-----------------------------TTTCCCTTGTTTACGGCACATGATATCTCCTCGAGATCAAACAATG-----
GCGCTGCAGCAACTCCGAATCTCAACC-------------ACAGCAGAATATGCCCTCAAAGATACGCCATGTGCA----
CCATCTACCACTTGTTTAGAAAAACTAAGCTGTCCCGAGTACAGTACACAAGTCACAAAACAGCGATGGCTTTGCAGGTT
---TATTGCTGAGGTAAAACGGAAACAAAAACTCTCGTCAGCAGAGGAGCAGCAGCGACGCAAGGGAGACAATGAAGTGG
AATGAATTC-----------------------------------------------------------------------
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---------------------------------------------TGTTATTCAAAATGAGTGATCACAATTCACAATTA
CTGAGGCATGATGCCCTACAATGAATTTC---TAATACCGCGACCTGGAACCAACCCCTTACCGCATTCCATTATTCTCG
CCAAAACGAAATGAAAAAATAAAGGTAGCACACAATGCACTCTCACTCTCTCTGTC----TGGTATGATATTACAGCCTA
CTAGTATACAGAAGTGCTGGGTCTCCAGCTTGACAACGATCAGTTGTCGCAGAACGCACGGAGGGTTTCGTCCAGTGCTT
TCCTGTCGTACTCACCGGTGAAAACGCAGCCTCCCAGAGGTCCTTTCAGAAGGATGAGCCTCAGCAATCCGTCCGCGACC
TTCTTGTCGACCTGATGCGCCATGCAAGGAATCA---ATCATTAAGGCTGTTTTTCATCAATGCTAAAAAGGAAC-----
TGAGATGTCCAAGCATATCAGCCTGCTTCTGCCAATATT-AAGGTACTTACAGCCATGATGTTTTTGAACTTCTCCACCG
TCATGCCCTTTGGTGGTGTCACGGGAAGCTTGGCTTGATCTAGTATGTCAAATGTCCGTTTCTTGATGGACTCGTCTATC
CAGCCCAGGCGGTAAGACATGTCAGCTGCCATAACCTATCGTAGTGCCAACACGGAAACAGAAGACGACGATAAGGAAAC
CAGATAAAGTCATGATTAAGAGGT-GTATCAAATATTCAACTGGTCTTACCGTTCCAGCAGCAACGGCTTCCCCATGGAG
CCATTCTCCATAGCCAAGCCCTGTTTCTATAGCCTGGCAATTAAATGAAACGATTAATGATCAGTGAGTAGCATGGATGC
CTCACAAAACAGAAGGTTGCTATCGAATTCCCAAAAAA---------------
>chr5A_563
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-------------------------------------------------------------------GCACGGTACGTTA
ACGTACCACGTACGCGCTCCCACCCA--------CCGGTCCACCCCCACCACCACCACAAGTGTCCGTTGGGAGGAGAGG
AGGGGAGCGGGTGGTACCGTACCGGCCGACCGCTCGCTGCCGCCGCGGCTCTATATAATGGCAGGGGCACCGGGCCACGG
CCACAACGGATACCTCACCTCTACTCGTCTT--------------------------CTTCCCTTCC-TTGGCTCATCAG
CTCTGCTCGTCTTTTCTTTCTTCTCCGGCTCACCTTTCAGCCTTTCTTTCTCTTTTCTGTTCAAGTTTAGCTAGCTTGCC
AGGGCTGCTACCTGCTCCCGCGCATCTCGATCTGTTTTTAGTCGATCTAGATCTGCATCCGAGCAAGCAAGCAAGCTTCT
CCATTTTCTTTTGCTTTTGATACACACATACATTCTAG-TACATCTCTCCGCCTGTTTTTGTTGGTTGGAGCTTTGATTT
CCTTTGCATTCCTAG-------TTCAGTTCTCAACGTTTACTCGGAATAATCAGCCGACTCTGCTCAGATCAGCCGCTTG
TTTCGGCACCAGATTTGGAAAGACCGACTCACAGATGGAGTGTGGTTTGAAATCCCTGAGCAGCAGCTCCTCCCCCGCAG
CGTCGCCTTCTCTGATGATGGCCTGCAGGCCGTTCCCGCAGCCGCCGCTCCTGCCCCTGCCGCCGCACCTCCAGGCCTCG
CCGCAGCAGCGGGCAGGCCAGCC---GGCCGACCTGCGCGCCAGCAAGAGCCCCAGGAAGCCGGCGAGCGGGGCGGCGTC
GGCGCCCATCGTGGTCGCGGCGGCGCCTATGTCGGCGTGGACGTCCATGGACTCGATGTACTCGATGTACTCGGTGTCGC
CGCCGCCGAGCAGCGTCCCGATGCCGACGTCGCTGCTGCTGGCCGCCGGCGCCGGCCGGAAGAAGGCGCCGACCCCGTGC
GCCGTGCAGGTGGCTGGCGCTGGCGGGGGCGTGGACGTCGGCGCCACCGACGAGCTCCGCCGCCTGCTCCGGCTCTAGCC
ACCGCTGCTCTACTGTGG---------GATGGCAAGGCGAGGGAGCTGCGGATGGATGTAGCCCGTTC--ATGGATCGTG
GGTAGTTTTTTTTTACCG---CGCCCGAGACGGAATCCTGACGAGG-CTGCTCCCCCGAGCTGTAACAACAATGTACTGA
TGCAGTG---TTACCACTTCTAATGATGATTTCCTTTTAGTTCCTTGTGTGCTTG--TGTTGTGTACCTCTGTTACGATC
TTCATTCGTGATGCGTCAGAAGTTTATACGCGTTCAGTTCGTGTGCGTGTGTTGCAACGCAGGAATTACGTCCAGATTTC
G---TATGAACTCGAGAAGGAACAGC--------------------------------------TCGACTCACGGGATCC
GGGTAAAACTGACGCATTATTTGGACGCCAGGCCACCAATCGTGTCCCCCGAGTACACTGCACCGGGAGATTCCTTTCCT
TTTTTTTTTTTGCGGGTGGGGGAGATTCCTTTCCCTTGTTTACGGCACATGATATCTCCTCCAGATCGAACAATGGCGCT
GCACTGCAGCAACTCCGAATCTGAACCCTGATAGCACGCGACAGCGGAATATGCCCTCAAAGATACGCCATGTGCAGCCA
CCATCTAACACTTGTTTAGAGAAACTAAGCTGTCCCGTACACAGTACACGAGTCACAAAACAGCCATGGCTTTGCAGGTT
TATTATTGCTCAGGTAAAACGAAAACAAAAACTCTCGTCGGCAGAGGAGCAGCAGCGGCGCAAGGGAGACAATGAAGTG-
--TGAATTCTGGGAACGAGAGGCGAAGGAAGCGAGGGAAAAAGGCGCGAGAGGCCACAGAAACGGCGCCAAAATTGATGG
GAAGGAGGTCCCCGGCGCTCAGCAGGGACGACTGCTCCGCTCCTAGTCCTTTGTGATGGAAGAAGTAGCCTGCGTGAATA
AAACACTGGAATTGATTAAACTTTTACCATCAGATTGCTTTAGAACTTGATCAAATTTCCCTTTTTTTCTCATCGAAGAA
GTAGCCTGCTGAACTCGGATCAGGCATCCCTTTTTCTGATGAAAAAAGCAACCTGCTGAACTCTGATCAAGCATTCCTTC
TTCTAATGGAAGATGCAACAAAAAGAGAAGAGGCTGATACAGTGCACCATGATTCCAATTCTAACAAGTATTTTTCTTAT
CTCAAGTACACTGATTTTACTTGATTTTATTCTTATCCCAATTACCGCTACTCTTTGCTTATTCTCTTATAGAAATCTTT
TTCGAGTACTATTCGTCCGAATATGACTTTGTATTTCAATAACAACTTACTTACATATAATTTCCAGGGACCAATCACAG
ATGATCTATTTACTGAGTCGTGGTGAAGCACTACTGTTTTTGGGCAATCATGTGCTCTGTACTTGAATTAGAGCACAAGC
AAGCATGGTTTTGGCAGATTTGGGCATTCAGTTCAGTTCTAGGTTACAGTTGCTCAATCCCTTTTGGCCATTCAGTTCAG
TTCTAGGTTCTGAGATATAATACTCCAATTTATGTATCTCAATCCCTTTTGCCATGCATTTCAAAGATAATACTCCAATT
TATGTATGCATGCTCATTGTACATTCGGCAACCAAAGCAAGCATTATGACTTTGTAATCCTGGAAGGACATGCTCTCAAA
TTGTCAACACGTGCTATCCTCTTTAATTAACAGCACCAGTATTATGCTCTCAAATTGACAGTCTTAGATCCCAACAGTAC
AATAGTTACGGTACAAAGAACGTCAGTGATTCACATTCAATATTTTGTAACAATAATCACACTCAAATTCACTCAACTCC
ACTCTCATATTACATGATTACAATCTGGATACAACATTCAGTCACACTATTCACTGAAGTGTACAACCAGTTCACATCAG
TTACAAAGCTCAATCTGGCATTTCTCCTACTGTTGCTGCTTCTCCATTGTTGCTGTTTCTCTGTTGTTGCTGCTTCTCTG
CTGTCTGCACAACTAAAATTACAGTTTCTGCACAACTGAAACTGAAGACACAGCAAGGCAAAGCAAGCAGCAAACCAATG
CAACGCGAGGCAAGCAGCAGAGAAACCCTCCGAGAAGAATCGGCGGCATCGACGATGCTTGGTCCGCGGCTCAACGGTCT
CGACGGCACCGGGGGCGTTGCACCCTGTACGCGGCCGCGGCTGACTCCACCGCCTCGACGGATAGGCATCGTCATGCCAT
GGACGGGGCAACGGCTGGCTCTGCCGCTCCACGGCTACGCTGCTCGCGCCCTGATGGAGCAGCGGCTGCTCTTCACCGCC
GAGCGAGAAAGCTGGCGCAGGCTGTAGTTCCTGTGAGTATCGTTGGATGCCTGATGAACGGTGTAGCGTGAACGACATCC
CTCGGCAGTAGAACTTCCTACGTCAGAGGATCTCGTTCCGAATTGTGTTTCTCAAAATGACTGATCAAGATTCACGATTA
CTGAGGCATGATGCCCTACAATGAATTGGTAGTACTA---CGACCTGGAACCAACCCCTTACCGCATTCCATTATTCTCA
CCAAAACGAAATGAAAAAATAAAGGTAGCACACAATGCAC--TCTCTCTCTCTCTCTCTCTGATATGATATTACAGCCTA
CTAGTATACAGAAATGCTGGAGCTCCAGCTTGACAACGATCAGTTGTCGCAGAAAGCGCGGAGGGTTTCGTCCAGGGCTT
TCCTGTCGTACTCGCCGGTGAAAACGCAGCCTCCCAGAGGTCCTTTCAGAAGGATGAGCCTCAACAATCCGTCCGCGACC
TTCTTGTCGACCTGATGCGCCATGCGAGGGATCA---ATCAGTAAGATTGGACT---TCAATATTAAAAAGAGAAATGCA
TGAGATGTCCAAGCATATCAGCCTGCTTCTGCCGATATTTAAGGTACTTACCGCCATGATGTTTCTGAACTTCTCTACCG
TCATGCCCTTTGGTGATGTCACGGGAAGCTTGGCTTGATCTAGTATGTCAAATGTCCGTTTCTTGATGGACTCGTCTATC
CAGCCCAGGCGGTAAGACATGTCAGCTGCCATAACCTATGGTAGTGCCATCCCGGAAACAGAAGACGCCAGTAAGGAAAC
AAGAGAAAATCATGATTAAGAGGTGGTATCAAATGTTCAGGTGGTCTTACCGTTCCAGCAGCAACAGCCTCCCCGTGGAG
CCATTCTCCATAGCCAAGCCCTGTTTCTATAGCCTGGCAATTAAATGAAACA--TAATGATCAGTGAGTAACATGGATGC
TTCACACAACAGAAGGATGCCATTAAATTCCAAAAAA----------------
>SNPs
--------------------------------------------------------------------------------
S------------------------S----------------------------S-----------------------S-
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
-----------S----------------------------------S---------------------------------
--------------------------SSSSSSSS----------------------------------------------
--------------------------------SS-------------------------------------S-------S
---S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------S---
------------------------S-------------S-----------------------------------------
------------------------------------------S--------------S---------------------S
---S--SS----SS------------------------------------------------------------------
---------------------------------------------S-------------S--------------------
-----------------S-------------S-----------------------------------------S------
---------------------------------------------------------------S----------------
---------------------SS-S-SS----------------------------------------------------
----------------------------------------S-----------------S---------------------
--------------------------------------------------------------------------------
--S----------------------------------------------------------------------------S
-SSSSS-SSSSSS----------------------------------------------S--------------------
---S----------------------------------------------------------------------------
------S--------------------------S---------------------SS----------------S------
-----------S----S------------------------S---------------------------SS---S-S---
SSS---S-------------S-S---------------------------------------------------------
----------------------SSS-------------------------S------------S----------------
--------------------------------------------------------------------------------
----SSS----S---------S-SS-------------------------------------------------------
--------------------S----S--S-----------------S-------------S-----S-------S-----
----S------------------------SS------------S------------------------------------
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----------------------------------------------------------------S---------------
------S--------------S----------------------------------------SS----------------
---------------S-------------------S-------------------S------------------------
------------------------------------S-----S--S----------------------------------
--------------------------------------------------------------------------------
----------------------------------SSS------------S--------------------------SS--
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------S------------------S--S-
--------SS-S-------------S-------S----SSSSSSSSSSSSSSS
>forward_839
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-------------------TCTACTGACTGCTTGGCACG-----------------------------------------
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>reverse_2246
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-----AAAGCAGCTCCGAATCAGCT-------------------------------------------------------
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>forward_840
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--------------------CTACTGACTGCTTGGCACGA----------------------------------------
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>reverse_2431
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------------------------------TCTCTCGTCAGCAAAGGAGC------------------------------
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