>input_sequence_60527
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-----------ATGGAAGGGGCGGGGAGCGGCGGGAAGATGGGAGGAGGAGAGGGGATGGCCGGCCGTGCCGGTGCCGGT
GCTGCGTGGGCGGCCAAGGAGAAGACCGGCTTCGCCGCCACCTGCAGCCTCCTGAGCCGCTACATGAAGGAGAAGAAGGG
CGGCGCACTGCAGGGCCTCGTCGGCCTCGACATGTCGCCGCCGGCTGCCGTCGTCGATGAAGGAGGTACGCCGTGACGTG
CCCTGTCGATTGGTTTCTCGGTGAACTTCTTTTCTTGTAGAAAGAACAGGGGATGGTTTTCTTCTGACTGGTCATGTGTC
TCATGCATT--------TAGTTAGCAACAAAGTTCTTACAAGATGT-------------TCATCTGAATTTGCAGGAGCT
TTCCAGCCGCCCACCACCATGAACCTGCTTTCGGGGCTAGAGGAGCCAAACGCCGCGCACGTGGAGCTCCCCCTCGAGAA
ATCTAGTGTTGGCCAGTTTCTCAAGGCCACAACTGACAACCAAGATGCCAGAGAGGATGCGCACCAGCTCACCATCTTCT
ACGGTGGAAAAGTGGTCGTGGTTGACAACTTCCCGTCCACCAAGGTCAAGGATTTGCTGCAGATGGCCGACGGCGCCGGA
GACAAGGCCGGGAGCAGCAGCCTCGTTCAGCAGAGCCCTCCCCAGCCTTCACAGAACACTCTCCCTGGTACTAATTCTCA
TGCTCTCTTTTGCAACTCTACCGTGAAAATATACAATACATGCAGACAAAGGGATTGTTTCAGTTCAGAGTCTCATGCAA
ATTTCCATATGAAATCCTTATCGCTAACAGAGTGCCAACATTTTTTGCTCGGTTGCAGATCTGCCAATAGCGAGGAGGAA
CTCACTCCATAGGTTTCTCGAGAAAAGAAAGGGCAGGTACCTGATCGAGCTGGGTTTTTTATGAAATTTTTCCTCAAGGA
AGACAGTGAAAATGTCTTCAGAAACTTGCTACATGTACGACCCTAACATTTTGTGCTCATTTACCCCAGGATAGTGGCGA
AGGCGCCTTACCAAATTAACAGCGCATCGGCGGCTCCGTCCAAGCAAGCTAATGGTGACAACTCCTGGCTCGGGCTAGGC
CAAGAAGTGACAAACTGA--------------------------------------------------------------
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>chr5B_1_TraesCS5B01G211000
ATAATAATCTTAAATCCACAAGTTACAAAACCGAC----GGTCGCCTTCCTTCTCCATTGCTTTCATTTTTTTTCGTCCC
TCACTCTGCTAGCTGCCGCTGCGAGGCGCCCTATACTATGGAGAGGTTTCGAGCTTCAACTTTGTGGGCTTTTGTTCCCA
CACCTCACCACACCTTGAGTTGCAGACGCTTCCTTCTCGGTGACGATCACCATCACCGTTGTTGATTCCTCATGGTTGTA
ATTCAGCGAGACAGTTGTCTCCAATACCCCCTCTACTGGTCAGAATAGCTATCATAATGGCTTGTCTATTTGAATACAAA
TTTGCTAAATTTGCGC-TTTTCTAGATCAACTGAGACTTAATGAACCCCCATCGGTTGAGACA-----------------
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-------------------------------------TAGTAAAACCGTCGTCATAGAGCAACAGCTAAGCCAAGCAAGC
CAAAAATCACCAAATGTAAATCAGCACATTACCACATATATAGGGGCCAAAC-GTACTGCTCCTCAGCACGACACATGCC
C-------GT-------------------------------------------------------CACACGTCTTGTCTC
CTTGCCCCGTACGTACCTCCCATCCCATCCACCTAAAAATAACCGAGAGAGACCGAC--CGCGCCTT--CGCTGCCCCGC
GGGTCAAATCCAGGCCCGAATACGAGCTCAAAAACCACGTGCCTCCGTGACCACCCACGGCC----CCCGATATTCATCG
CCAACACTCCACGACCTTTTCCTTCGATGGGACCGTCGCGGACGGAGACCTCACCGCTCCACCCGTCCGGTCGTGCCCAC
GACTCGGAAGAACCTAGTGAGCTGCGTGCCCCTCCCATTCCCCCACGTTTTCCATGCCCGGCCGTGCCCGGCCCGACGGG
TCCTTGTCGTCCCACCTCGCCGTTTATCACGAAGAGCTGATCCATTTTAAAAGGGCGGAGGCGCCCGGCATGAGGAAAAG
TGCACTGGAGTTGTTTGTCGGAGGCAGCAGGCAAGCCAAGGAAGGAGCGAGGAAGCTAGCTCCGGTGGAGAGGCGACTT-
GTTTGTTGTGCATGGAAGGGGCGGGGAGCGGCGGGAAGATGGGAGGAGGAGAGGGGATGGCCGGCCGTGCCGGTGCCGGT
GCTGCGTGGGCGGCCAAGGAGAAGACCGGCTTCGCCGCCACCTGCAGCCTCCTGAGCCGCTACATGAAGGAGAAGAAGGG
CGGCGCACTGCAGGGCCTCGTCGGCCTCGACATGTCGCCGCCGGCTGCCGTCGTCGATGAAGGAGGTACGCCGTGACGTG
CCCTGTCGATTGGTTTCTCGGTGAACTTCTTTTCTTGTAGAAAGAACAGGGGATGGTTTTCTTCTGACTGGTCATGTGTC
TCATGCATT--------TAGTTAGCAACAAAGTTCTTACAAGATGT-------------TCATCTGAATTTGCAGGAGCT
TTCCAGCCGCCCACCACCATGAACCTGCTTTCGGGGCTAGAGGAGCCAAACGCCGCGCACGTGGAGCTCCCCCTCGAGAA
ATCTAGTGTTGGCCAGTTTCTCAAGGCCACAACTGACAACCAAGATGCCAGAGAGGATGCGCACCAGCTCACCATCTTCT
ACGGTGGAAAAGTGGTCGTGGTTGACAACTTCCCGTCCACCAAGGTCAAGGATTTGCTGCAGATGGCCGACGGCGCCGGA
GACAAGGCCGGGAGCAGCAGCCTCGTTCAGCAGAGCCCTCCCCAGCCTTCACAGAACACTCTCCCTGGTACTAATTCTCA
TGCTCTCTTTTGCAACTCTACCGTGAAAATATACAATACATGCAGACAAAGGGATTGTTTCAGTTCAGAGTCTCATGCAA
ATTTCCATATGAAATCCTTATCGCTAACAGAGTGCCAACATTTTTTGCTCGGTTGCAGATCTGCCAATAGCGAGGAGGAA
CTCACTCCATAGGTTTCTCGAGAAAAGAAAGGGCAGGTACCTGATCGAGCTGGGTTTTTTATGAAATTTTTCCTCAAGGA
AGACAGTGAAAATGTCTTCAGAAACTTGCTACATGTACGACCCTAACATTTTGTGCTCATTTACCCCAGGATAGTGGCGA
AGGCGCCTTACCAAATTAACAGCGCATCGGCGGCTCCGTCCAAGCAAGCTAATGGTGACAACTCCTGGCTCGGGCTAGGC
CAAGAAGTGACAAACTGACGGTACAAGAAAGAG--GCATGATGAACACTTGACTTGGGCTCCAAATCTATAGGGCAAATG
ATCTACGGGGAGCGTGGATGTTATTTTACTACTAGTACTGGTAGTTTACTCGTAGCTTTGAAGCGACAATAATCGGGCGT
TGGTTATTCATTTCTAGTAACAATTAGTAGTAATAGCCGGTGGTTGATTCTGATTGAACATCGGCATATATAGATACGTA
TGTAAGCACATGCCGTCTGTTTGCACCATTGTTTGCTGCTGGAGCTGTGTAT-----GCTCACGGCAGTTTGGCAGCCTA
GGTCTACTAGGACTATTGTCATGGTCATCTTATTGCAAGTT----TGCAACGTATTACAGATGGTTTGCCTTCCTCGACA
TGTCATGGAAAGTTGCACGCGCGTTCCTTGATTATTTTATTATATATTTTTAGATAGTCCCCTGATTCATGCAGTGCTCA
TTTTAA-TTCTTACACGGGCTGCTCAGTTTGAGATGATCCTATTAGTTTAATTGAACTTCTGCTACCCCTCAAAAGTAAA
TTGAACTTCTGCTTTTAAAAAGGCTGTGTTTATTTGCTACACAGCGGATCTAATGTTCAGCAAAACTACAACGCATTATA
GAACACAAGAAAAAATGTAGAGCTTAGGGCAACTCCAATGTGGGGCGCCGGATCCAACCGTAGGCATCAAATGTATGTTC
GCATAGTATTTTTTTTTCTGTGCTCGAAGTATTAAAAATAATCAAACATAAATAGCACAATTCTTTGAGAATTGAAAGAT
AAATATTCCGATAACCGAAAGATAAATATTTCAACGCAACAATAATTCAAATATAAATATTACAATCCAAATATAAAGTT
TTGAAATAAAATGGTTCAAATTTGAATTCTATTTATTGACACGTGTTCTAGTTGTTCATATGAAACACCCGCATATGCTC
AATCAGATACTTTTGAAGTTGCTCATGAGTTCCTCGATCATGAATCTGCTGATGCATTTCGAGAAAAACC
>chr5A_12
-----------AAAGCCACAAGTTACAAAACCGACATCAGGTCACCTTCCTCCTACCGCTGCTTCCA-TTTTTTCGGCCC
TCCCTCTGCTAGTTGCCGCTGCAAGGCGCCCTGTACTATGAAGAGGTCTCGAGTTTCAATGTTTTGGGCATTTGTTCCCA
CACC-CACCACATCATGAGTTGCAGACACTCCCGTCTCGATGACGTCCACAATCGCCGTTGTTGATTCCTCATGGTTGTA
ATTCAGCGAGACAATCGTCTCCAGTACCCCCTCAAATGGTTAGAATAGCTATCATAAGGGCCCGCC--TTTGAATACGGA
TGTGCTAATTTTTGCATTTTTCTAGATCAACTAGGACTTTATGAACGCCAGTCGGTTGGCTAACCAATTTATGATCGAAT
GATTAGAAAGACATTGATATTCTTTGCCCATCAAAGTTCAAGTCTCAGACTTGACATTGGTCTCGTTGACCACTTCAATC
TCAAGAGCCGGCTCAGTCTGTACCCATCGGCTGAGACTAGTAAAACCGTCGTCATAGAGCAACAGCTTAGCGGAGCAAGC
CAAAAATCACCAAGTGTAAATCAGCACATTATCACGCATATAGGGGCCAAACTGTACCGCTCCTCCGCACGACACATGCC
CTTTGTAGGT-------------------------------------------------------CACACGTCGCGTCTC
CTTGCCCCGTACGTACCTCCCATCCCATCCACCCAAAAATAACCGAGAGAGCGACCTACCGCGCGCGCGCGCTGCCCCGC
GGGTCAAATCCAGGCCCGAATACGAGCTCAAAAACCACGTGCCGCCGTGACCACCCCCGGCCCCCGCCCGATATTCATCG
CCAACACTCCACGACCTTTTCCCTCGATGGGACCGTCGCGGACGGAGACCTCACCGCTCCACCCGTCCGGTCGTGCCCAC
GACTC--------CTAGTGAGCTGC----CCCTCCCATTCCCCCACGTTTTCCATGCCCGGCCGTGCCCGGCCCGGCGGG
TCCTTGTCGTCCCACCTCGCCGTTTATCACGAAGACCCGATCCATTTTAAAAGGGCGGACGCGCCCGGCAGGAGGAAAAG
TGCACTGGAGTTGTTTGTCGGAGGCAGCAGGAGAGCGAAGGAAGGAGCGAGGAAGCTTGCTGCGGTGGAGAGGCGACTTG
GTTTGCTGTGCATGGAAGGGGCGGGGAGCGGCGGGAAGATGGCAGGAGGAGAGGGCATGGCCGGCCGTGCCGGTGCCGGT
GCCGCGGCGGCGGCCAAGGAGAAGTCCGGCTTCGCCGCCACCTGCAGCCTCCTGAGCCGCTACATGAAGGAGAAGAAGAG
CGGCGCGCTGCAGGGCCTCGTCGGCCTCGACATGTCGCCGCCGGCCGCCGTCGTCGGTGAAGAAGGTACGCCGTGACGTG
CCCTGTCGATTGGTTTCTCGGTGAACTTCTTTTCTTGTAGAAAGTACAGGGGATGTTTGTCTGCTGACGGATCATGTGTT
TCATGCATT--------TAGTTAGAAACAAAGTTCTTACAAGATGTAGCACACGGTTGTTCATCTGAATTTGCAGGAGCT
TTCCAGCCGCCCACCACCATGAACCTGCTGTCGGGGCTGGAGGAGCCAAACGCCGCGGACGTGGAGTTCCCCCTCGAGAA
ATCTAGTGTTGGCCAGTTTCTCAAGGCCACAACTGACAACCAAGATGCCGGACAGGATGCGCACCAGCTCACCATCTTCT
ACGGTGGAAAAGTGGTCGTGGTTGACAACTTCCCGTCCACCAAGGTCAAGGATTTGTTCAAGATGGCCAACGGCGCCGGC
GACAAGGCCGGGAGCAGCAGCCTCGTTCAGCAGAGCCCTCCCCAGCCTGCACACAACACTCTCCCAGGTACTAATTCTCA
TGGCCCCTTTTACAGTTCTACCATGAAAATGTGGATG-----------AAGAGACTGT-----TTCAGAGTTTCATGTAA
AATCCCATATGAAATCCTTGTCGCTAACAGAGCTCCAACATTTTTTGCTGGGTTGCAGATCTGCCCATAGCGAGGAGGAA
CTCACTCCACAGGTTTCTCGAGAAAAGAAAGGGCAGGTACCTGATCTAGCCGTTTCTC---TGAAAAACTTCCTGAAGGA
AGACAGTAAAAATGCCTTCAGAAACTTGCTACATGTACGACCCTAACATTTTGTGCTCATTTACCCCAGGATAGTGGCGA
AGGCGCCCTACCAAATTAACGGCTCATCGGCGGCTCCGTCCAAGCAAGCTAATGGTGACAACTCCTGGCTCGGGCTGGGC
CAAGAAGTGACAAACTGACGGTACAAGAAAGATATGCATGATGAACACTTGACCA-GGCTCCACATCTATAGGGCAATTG
ATCTACGGGGAGCGTGGATGTTATTTTACTACTAGTGCAGGTAGTTTACTCGTAGCTTTGAAGCGACAATAATCGGGTGT
TGGTTATTCATTTATAGTAAGAATTATTAGTAGAT--------------------------------------ATATGTA
TTTAAGCATATGCCGTCTGTTCGGACCATTGTTTGCTGCTGGAGCTGTGTAT-----GCTCACGGCAGTTTGGCAGCCTA
GGTCTACTAGGACTATTGTCATGGTCATTTTATTGCAAGTT----TGCAACGTATTACAGATGGTTTGCCTTCCTCAACA
TGTCATGGAAAGTTGCCAGCGCGTTCCTTGATTATTTTATTTTGTTTTTTGAGCTAGTCCCCTGATTCATGCAGTACTCG
TTTTCTTTTCTTACATGGGCTGCTCAGTTTGAGATGATCCTATTAGTTCAATTGAACTTCTGCTACCCCTCAAAAGAAAA
TTGAACTTCTGCTTTTAAAAAGGCTGTGTTTATTTGCTACACAGCGGATCTAATGTTCAGCAAAACTACGACGCATTATG
GAACACAT-AAAAAATGTAGAGCTTAGGGCAACTCCAATGTGGGGTGCCGGATCCAACCGTAGGCATCAAATGTACGTTC
GCTTAG---TTTTTTTTCTGTGCTTGAAGTACTAGAAACATCAAAG-ATAAATAGCACAATTCTTTGATAATTGAAAGAT
AAATATTCCGATAACTGAAAGATAAATATTTCAACGCAACAATAATTCAAATATAAATATTACAATCCAAACACAAAGTT
TTGAAATAATTTTTG---AATTTGAATTCAACTTATTGTCACGTGTTCTAGTTGTCCATATGATACGCCCGCATATGCTC
AATCAAATAA-TTTGAAGCTGCTCATGAGTTCCTCGATCACGAATCTGCTGATGCATTTCGAGAAAATCC
>chr5D_355
AAAGAACC------------------------------------------------------------------------
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---------------------ACCCATCGGTTGAGACTAGTAAAACCGTCACCATAGAGCAATAGC-TAGCCGAGCAAGC
CAAAAATCACCAAATGTAAATCACCACAGGGTGTGTGTATGCGTTCATAGAAATGAGTGCATATGTGTATGTATGAGCAT
CTGCGTCGTACCGTGTTAAAAAAAACACCCATCTCTTGAGACTAGTAAAACCGTCGTAAAATCACCACACGTCGCGTGTC
CTTGCCCCGTACCTACCTCCCATCCCATCCACCCAAAAATAACCGAGAGAGAGACCGAGCGCGCCTT--CGCTGCCCCGC
GGGTCAAATCCAGGCCCGAATACGAGCTCAAAAACCACGTGCCTCCGTGACCACCCACGGCCCCT----GATATTCATCG
CCTACACTCCACGACCTTTTCCCTCGATGGGACCGTCGCGGACGGAGACCTCACCGCTCCACCCGCCCGGTCGTGCCCAC
GACTCGGAAGAACCCAGTGAGCTGC----CCCT-CCATTCCCCCACGTTTTCCATGCCCGGCC----------CGACGGG
TCCTTGTCGTCCCACCTCGCCGTTTATCACGAAGAGCCGATCCATTTTAAAAGGGCGGAGGCGCCCGGCAGGAGGAAAAG
TGCACTGGAGTTGTTTGTCGGAGGCAGCAGGCGAGCCAAGGAAGGAGCGAGGAAGCTAGCCGCGGTGGAGAGGCGACTT-
GTTTCTTGTGCATGGAAGGGGCGGGGAGCGGCGGGAAGATGAGCGGAGGAGAGGGGATGGCCGGCCGTGCCGGTGCCGGT
GCCGCGTCGGCGGCGAAGGAGAAGTCCGGCTTCGCCGCCACCTGCAGCCTCCTGAGCCGCTACATGAAGGAGAAGAAGGG
CGGCGCACTGCAGGGCCTCGTCGGCCTCGACATGTCGCCGCCGGCCGCCGTCGTCGTAGGAGAAGGTACGCCGTGACGTG
CCCTGT---------------------------CTTATAGAAAGAACAGGGGATGTTTGTCTGCTGACTGATCATGTGTT
CCATGCATTTACTACTGTAGTTGGCAACAAAGTTCTTACAGGATGTAGTGCACGGTTGTTCATCTGAATTTGCAGGAGCT
TTCCAGCCTCCCACCACCATGAACCTGTTGTCGGGGCTGGAGGAGCCAAACGCCGCGGACGTGGAGCTCCCCCTCGAGAA
ATCTAGTGTTGGCCAGTTTCTCAAGGCCACAACTGACAACCAAGATGCCGGAGAGGATGCGCACCAGCTGACCATCTTCT
ATGGTGGAAAGGTGGTCGTGGTTGACAACTTCCCGTCCACCAAAGTCAAGGATTTGCTGCAGATGGCCGACGGCGCCGGA
GACAAGACCGGGAGCAGCAGCCTCGCTCAGCAGAGCCCTCCCCAGCCTGCACAGAACGCTCTCCCTGGTACTAATTCTCA
TGGTCTCTTTTGCAGTTCTACCGTGAAAATATACAATACATGCAAACAAAGAGACTGTTTCAGTTCAGAGTCTCGTGTAA
ATTTCCATATGAAATCCTTATCGCTAACAGAGTTCCAACATTTTTTGCTCGGTTGCAGATCTGCCTATAGCGAGGAGGAA
CTCACTGCATAGGTTTCTCGAGAAAAGAAAGGGCAGGTACCTGATCTAGCCGTTTCTC---TGAAAAACTTCCTGAAGGA
AGACCGTGAAAATGTCTTGAGAAG-TTGCTACATGTACGACCCTAACATTTTGTGCTCATTTACCCCAGGATAGTGGCGA
AGGCGCCTTACCAAATTAACAGCTCATCGGCGGCTCCGTCCAAGCAAGCTAATGGTGACAACTCCTGGCTCGGGCTAGGC
CAAGAAGTGACAAACTGACAGTACAAGAAAGATATGCATGATGAACACGTGACTG-GGCTCCAAATCTATAGGGCAATTG
ATCTACGGGGAGCGTGGATGTTA-----CTACTAGTACTGCTAGTTTACTCGTAGCTTTGAAGCGACAATAATCGGGTGT
TGGTTATTCATTGCTAGTAAGAATTATTAGTAGAA--------------------------------------ATATGTA
TTTAAGCATATGCCGTCTGTTCGGACCATTGTTTGCTGCTGGAGCTGTGTATGCTATGCTCACGGCAGTTTGGCAGGCTA
GGTCTACTACGACTATTGTCATGGTCATTTTATTGCAAGTTAATTTGCAACATGTTACAGATGGTTTGCCTTCCTCAACA
TGT-----------------------------------------------------------------------------
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>SNPs
-S-SS-SSSSS---S----------------------------S-------S--S-SSSSSS---SSS--------S---
--S---------S---------S---------S-------S------S-----S-----SS--S-----S----------
----S-------S-S------------S--S--S-----S-----SS---S---S-------------------------
-------------S-S-------S---------S-S----S----------------S---SS-S-SS---------SS-
-S------S---SSSS----------------SS-----S------S--SS-------SSSS------------------
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-------------------------------------------------------------------S----S-------
-------------------------------S---SS----------------------------S--------------
-------------------------------------------------------------------------SS-----
---------------------------------S------------------SSSSS-----------------------
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----------------------S---------------------------------------------------------
-------------------------SSSS---------------------------------------------------
-------------------------------------S--------------------------------S---------
--------------------------------S----------------------------S------------------
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--S----S----------------S-------------------------------------------------------
---------------------------------------------S----------S-----S-----------------
-------------------------------------------------------S--S---S-------S--------S
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-----------------------------S--------S------------------S----------------------
-------------------------------------------------S------------------------------
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------------------------------------------------S-------------------------------
--S-----------SS----------------------------S------S--S----------------------S--
---------------------------------S-------------------------------S--------------
----------------------------------------------S---S-SS-S-SSSS-----SSS-----S-----
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-----------------------S--------------------------------------------------------
--------------------------------S---------------------SS---------------------S--
-----------------------------------------------------------------------------S--
--------------------S-----S-----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---
-S------S------------S-S--------------------------------------------------------
----------------------------S-----------------------------------------------S---
----------------SS-----------------------S-S-S----S--S---------------------S---S
----SS---------S--------------------------------S---------------------------S---
---------------------------------------------------------------------S---------S
-------SS------------------------------------S-----------------------------S----
--S---SSS---------------S------S--S---S-SSS--SS---------------------S-----------
---------------S-------------------------------------------------------S-S------
---------SS-SSSSSS-----------S-S------S----------------S-------S--S-------------
-----S---SS-------S---------------------S--------------------------S--
>forward_194
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--------------TTGAGTTGCAGACGCTTCCT----------------------------------------------
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>reverse_1417
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--------------------------------------------------------ATGAAGGAGGTACGCCGTGA----
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>forward_988
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--------AGAACCTAGTGAGCTGCGTG----------------------------------------------------
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>reverse_2816
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---------------CGGGCTGCTCAGTTTGAGAT---------------------------------------------
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