>input_sequence_60485
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--------------------------ATGTCAAGTCTCCGGTCCCTTACTGTGATCAACTTCAACCTCAATGCA---ATT
TCTGGTGTGATTCCTGAATTCTTCGCGGACTTTCTCAATTTAAGTGTTCTTAAACTCAGCTATAACCATTTTAGTGGTTG
GTTTCCTCCAATGAAATTTCAACTCAAGAACATAAGAGTCCTTGATGTGTCAAGCAATGGTGAACTCTCAGGGCA-TTTA
CAAGAATTTCCAAATGATACTTATTTGGAGACTTTGAATCTACAATACACTGCCTTCTCCGGTATCCATTTAAGCTCTTT
TAGCAACCTTCTATCTCTGAGGGAGCTAGGTTTTGATGGAAGGTCAATTTCTATGGGGCCGACCGATTTATTGTACCACA
ACCTCGATTCCTTGCAAAACCTGCAACTCTCTCCTGTGGGATTTTTGGGAGACTTAGGAGCATTTTTCTCATGGATTATT
AGCCTTAAGAGCTTGACAAGCTTGCAACTCTCTTATTGCTATTCCTCCAAGATAATGCTCGCCTTGGATGGCAACCTCAC
CAATTTGACGAGTTTAGATATTTCTAGTTGTGACTTG------------CCACAATCATTTGGCAACCTCAACAAGTTGA
CCTCCTTAAGAATATCTGATTGTGTCCTCTCAGAGATGATAGCATCTTCAATTGGCAATCTCAAGGAACTAAGAAGCTTG
GAAATCTCTTATAGTGACTTCTCTGGAACAATACCATCTTCAATTGGCAATCTCAAGAAACTAAGAAGCTTGAAAATCTC
TCACAGTAACTTCTCAGGGACAGTACCATCTTCAATTGGCAATCTCAAGAAACTAAGAAGCTTGGAAATATCTCATAGTG
GCTTATCAGGTCAAATACCAGCACCTATTGGATATCTCAGAAGATTGAAGATCTTAGTACTAGCGGGCTGCATGTTATAT
GGCAGAATACCAAGTTTAATTGCCAACTTGACTCAACTGACTTATCTAGACCTTTCGCAGAATGTCCTTCAAGGTAAGGT
TCATAACCCAAGTATACCCGAAGCAACTGGAACAAGAACTGAAAATAAACCCATGCATATATCTGTCATGAATACAATTT
TCTGCATCAACCTGCATTTTATTAGCTAG---------------------------------------------------
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>chr3B_1_TraesCS3B01G569400
CGGGAGTGAAGACTTGGTCAGAATTCAAAGTCATCAACATCGTGAATACTAATATAACAGCAGGAGGGTTCTTCCACCAT
GGCACAACATCTGGCTCTTTTTAAGGA------AAACAAATGACAAACACATTTGTTTCAGCACAAAAAAACAAACACAT
CTGGCTCGTTGCTTGTGAAAGAACTAGACGATGACATTTGTCGCAAAGAAGAGACTATGT-TCAATGTTATATATCGTTC
TAAGGAGTAAGGAGTCTGGTTG-----CAGAGGTCCAAACAAACCAATGGCTTGTGCTACTCACCTGCTTCCACTCTTCC
TATTGATACAACTCTTATCGCTAGCTGCATCCAATTCCCATGGCAT------------TGGTAACGCTACAGCTGCTTCT
TTCTGCCATCCCGACCAGGCTTCGGCACTTCTCGGACTAAAGCAGTCCTTCATCTTCGACTAC---ACCACGACACTGCC
ATCATGGCAGCCTGGCACCGATTGCTGCCTCTGGGAAGGTGTCGGCTGTGATGATGGCGCATCTGG---CG---GGGGCC
GTGTCACTGTGCTTGACCTTGGTGGCCGTGGCCTCTATAGTTATGGCTGCCATGTCACGCTCTTCAACCTTACCTCCCTG
CGCTACCTCGACCTCAGCTTGAATGATTTTGGCAAATCTCACATCCCGGCAGCTGGTTTCCAGATGCTATCCAAGCTCAC
CCACCTCAACCTTTCTAATTCAGGCTTCTATGGTCAGATACCAATTGCCATCGGCCAGCTCACAAGCCTCATCTCGTTGG
ATCTTTCACACCAGGCTATGATTTCCAAGG---------------------------------GTGAATATAACAGTCTC
CTGTTACGAGAGCCCAGCTTTATGACCATGGTGGCAAACCTCACCAATCTGAGGGAACTCTACCTTGACGGAGTGGACAT
ATCAGGTAGCGGAGAAGGATGGTGCAGTGGTCTAGGTGAAGCTGTCCCCAGTCTTGAGGTTCTTAGCATGTCATAGTGTC
ATCTCCATGGTCCAATCCACTCCTCCATGTCAAGTCTCCGGTCCCTTACTGTGATCAACTTCAACCTCAATGCA---ATT
TCTGGTGTGATTCCTGAATTCTTCGCGGACTTTCTCAATTTAAGTGTTCTTAAACTCAGCTATAACCATTTTAGTGGTTG
GTTTCCTCCAATGAAATTTCAACTCAAGAACATAAGAGTCCTTGATGTGTCAAGCAATGGTGAACTCTCAGGGCA-TTTA
CAAGAATTTCCAAATGATACTTATTTGGAGACTTTGAATCTACAATACACTGCCTTCTCCGGTATCCATTTAAGCTCTTT
TAGCAACCTTCTATCTCTGAGGGAGCTAGGTTTTGATGGAAGGTCAATTTCTATGGGGCCGACCGATTTATTGTACCACA
ACCTCGATTCCTTGCAAAACCTGCAACTCTCTCCTGTGGGATTTTTGGGAGACTTAGGAGCATTTTTCTCATGGATTATT
AGCCTTAAGAGCTTGACAAGCTTGCAACTCTCTTATTGCTATTCCTCCAAGATAATGCTCGCCTTGGATGGCAACCTCAC
CAATTTGACGAGTTTAGATATTTCTAGTTGTGACTTG------------CCACAATCATTTGGCAACCTCAACAAGTTGA
CCTCCTTAAGAATATCTGATTGTGTCCTCTCAGAGATGATAGCATCTTCAATTGGCAATCTCAAGGAACTAAGAAGCTTG
GAAATCTCTTATAGTGACTTCTCTGGAACAATACCATCTTCAATTGGCAATCTCAAGAAACTAAGAAGCTTGAAAATCTC
TCACAGTAACTTCTCAGGGACAGTACCATCTTCAATTGGCAATCTCAAGAAACTAAGAAGCTTGGAAATATCTCATAGTG
GCTTATCAGGTCAAATACCAGCACCTATTGGATATCTCAGAAGATTGAAGATCTTAGTACTAGCGGGCTGCATGTTATAT
GGCAGAATACCAAGTTTAATTGCCAACTTGACTCAACTGACTTATCTAGACCTTTCGCAGAATGTCCTTCAAGGTAAGGT
TCATAACCCAAGTATACCCGAAGCAACTGGAACAAGAACTGAAAATAAACCCATGCATATATCTGTCATGAATACAATTT
TCTGCATCAACCTGCATTTTATTAGCTAGCTAATCAACTTACGACATCCCTAGCCATTCCCTTCAATATTACTCCCTCCA
TTCCATAACTCTTATCATCATTTTAGTACAAATTTGAAGTAAAACCATGACAACAATTATGGAGTGGAGGGGGTAACTCA
TTATACGCCTCCTTATACTTAACTCATTACAATATGAGGAGTTAAATGGTCGCGAGACCTAGGCGAACCCATATATTTAA
ATTCTTCTAACTTTTGTCATGTATATTTCAAAAAATTGCATGGTATTTCATCAATCACTCGAATGATTCAAATTTAACAT
ACACAACAAATCAACCATGGAT--ATGCATATAGTTCATCTAATCGAGCAATTCAAATTAAAACATGCATAAATTTCATC
CGAAAGGCATCACATTGATCAAGTTTGATCCAAAATCACCACAACATAACATGTCTTATGTCGTGGATCGAGCCCTACCA
AAGCCGCACTATACTAA-----------------------------CTCAA------------------------AGGAA
ATCATCACCACCCCCACGACCAGCACCACCATCAACTCCAAGGAAATCATCACCAACCTCAAGGCTACCACCATCACCTC
CATGGACATCATCACCTCCATGGTTACCACCATCAGCACAAAGAGAGACCTTCGATTGGTCTATGATCTCTAAACGAGTG
AGCTCCCAATACTTCCTTGACGCGGCATCCATCATGTAGGGGTTCATACGAACATGATAGTCAGCTCATTGGCCTTCTTC
TCTTTTGCAAGCCTTTCCTCCTCAAGAGCAATCCTAATTTCCTTTGCCACCACCTTCCTA--------------------
--TCCACTTCTTGCCCACCAAGTACTAGAGCTCGCTCCACCTTGTCGCCTTCTCTTCCTTGTGTTCGGCTGCCAATGCTT
TCTTGGTCTCAATCATAGCACAATGCTCCTCCTTGTAGGCGTCGACGCCTCCACGGTTCTTGCTCTCTTTTGCAAGGCTT
TGCCCATCCGACCTCTTGTCTGTGATCTCTTCGGTGTAGTCTCAAAGTTCCTCCTGATCCACTTCC
>chr3B_24
-----------------------TTCAAAGTCCTCAGCATCATGATTAATAATTGTACAGTAGAAAGTTTCTTCCACCAT
GGCGCCACATCTGCCTCTCTGTAAAAAAAAAACAAATT-------AACACGTTTGTTTCAGAATAAGAAAACAGGCGCAT
CTCGCTTCTTGCTAGTGAAAGAACTAGTCGATGACATTTGTCGCAAAGAAGAGACGATGT-GCGATGTTATATACACGGT
TCCCAC-------------TTACAATTAGGACATCCAAACGAACCAATGGCTTGTGCTACTCACCTTCTTCCCATGTTCA
TACTGATACAACTTTGTTCTCTAGTTGTATCTACTTCCCATGCCCATGAT------CATGGTAACACTACAACTGCTTCT
TACTGTCAGCCAGACCAGGCTGCCGCACTTCTCCAATTAAAGCAGTCATTCATCTTCGACTATTCCACCACCACACTGCC
ATCATGGCAACCAGGTACTGACTGCTGCCTTTGGGAGGGCGTCGGCTGTGGTGGTGGCG------------------GCA
GTGTCCGAGTTCTTGATCTCGGCGGCCGTGGCCTCTACAGCTATGGCTGCCATGCTGAGCTCTTCAACCTTACCTCCTTG
CACTACCTCGATCTCAGCATGAATGATTTTGGCGGTTCTCGCATCCCAGCAGCAGGCTTTGAGAAGCTATCCAAGCTCAC
TCACCTCAACCTTTCTTATTCAGGCTTCTATGGTCAGATACCAATCGCCATCGGGAAGCTCACGAGCCTCTTATCATTGG
ATCTTTCTTCGCTGCAGAATATAATTTTCGGGACTCCATATGTTCG------------CTTGAGTGGCTATAACAATCTG
CTGCTACAAGAGCCCAGCCTTGACACCTTATTGGAAAACCTCACCAATCTGAGGGAACTCTACCTTACCGGAGTGGACAT
GTCTGGTAGCGGAGAACACTGGTGCAGTGGTCTAGGTAAAGCTGTCCCCAGTCTTCAGGTTCTTAGCATGCCATACTGTA
ATCTCTATGGACCAATCCACTCATCCATGGCAAGTCTTCGGTCGCTTACGGTGATTAACCTCGAGCGTAACCAT---ATT
TCTGGTGTGGTTCCTGAATTCTTCTCACACTTTCTCAATTTAAGTGTTCTTCTACTCAGCGACAACAGTTTCAATGGCTT
GTTTCCTCTGACAATCTTTCAACTTAGCAATATAAGGGAGCTTGATGTCTCCATCAACAGTGAACTCTCAGGTTTTTTTA
CCAGAATTTCCAAATGGGACTTCGTTGGAGATTTTGAATCTACAGTTAACAAATTTCTCTAGTATCAAGCTGAGTTATTT
TAGCAACCACCTGTATCTTAAAGAGCTAGGTCTTGATGCGAGGTCAATTTCTGTCGAGGCTAATGGTTTATTGTTCAGCA
AGCTCAACTCTTTGCAAAATTTGCAGATCTCTTTTGCACAATTTTCTAGGGAGTTAGGGCCACTTTTCGCATGGATTGGT
AACCTTAAGAAGTTGACAATCTTGCAACTCTCTTATTGCTATTCGTCCAAGATAATGCCCCCTTTGATTGGCAACCTCAC
CAACTTGACAAGTTTGGAAATTACTAAATGTGGATTTATTGGGAAAATACCACTATCAATTGGCAACCTCAACAAGTTGA
CTTCCTTGA-----------------------------------------------------------------------
-AAATTTCTGATTGTGCCTTCTCTGGAACAATACCATCTTCAGTTGGCAATCT---------------------------
---------------------------------------------TAAGAAACTAAGAAGCTTGGTAATC----------
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>chr3B_24
-----------------------TTCAAAGTCATCAGCATCATGGCTAATAATTTTACGGCAAGAGGGTCCTTCCACCAT
GGCGCCACACCTGGCTCTCT-TAAGGA------AAACA-------AACACATTTGGTTCAGAACAAGAAAACAAACACAT
CTGGCTCCTTTCTAGTGAAAAAACTAGGCGATGACATTTGTCGCAAAGAGAAGATGATCT-ACGATGTTATATATCATTC
TCGGGGGTCTGGTTAGTGGTTACAATTCAGAGGCCCAAACGAACCAATGGCTCGTCCTACTCAGCTTCTTCCCCTCTTCA
TACTGATACAACTCTACTCAGTAGCTGCATCGAATTATCATGCCCATGGCGATGGCCATGGTAATGCCACAGCTTCTTCT
TACTGTCATCCAGACCAGGCTGCAGCACTTCTCGAACTAAAGCAGTCCTTCATCTTCGACTACTCCACCACCACCCTGTC
GTCTTGGCAACCTAGCACCGACTGCTGCCTTTGGGAGGGTGTAGGCTGTGATGATGACATATCAAGCAGTG---GCGGCA
GTGTCACTGTTCTTGACCTTGGTGGTCGTGGCCTCTACAGCTACGGTTGCCATGCCGCACTCTTCAACCTCACCTCCCTG
CGCTACCTCGACCTCAGCATGAACGATTTTGGCGGATCTCGCATTCCAGCAGTTGGCTTTGAGAGGTTATCCAAGCTCAC
ACACCTCAACCTTTCTCATTCAGGTTTTTACGGTCAGATACCGATCGCTATCGGCAAAATCTCGAGTCTTATATCATTGG
ACCTTTCTGTAGTTCGAGATATTAATCCATCAGATGAAATTACATATACCCTTGCTCTCGTAGAGGACC---ACTATCTT
CTGCTACATGAGCCTAGCTTTGAGAACTTAGTGAGAAATCTTACCAATCTGAGGGAACTCTATGTTGATGGAGTGGACAT
TTCAAGTAGCGGCGAACAGTGGTGCAGTGGTCTAGGTAAAGCTGTCCCCAGTCTTCGTATTCTTAGCATGGCATACTGCA
GACTTCGTGGTCCAATCCACTCCTCCTTGTCAAATGTTCGACTCCTTACCGTGATCAACCTAAATTTTAATGAT---ATT
TATGGTGCCGTTCCTGAATTCTTTGCGGACTTTCTCAATTTAAGCCTTCTTCAACTCCGTTTCAACAATTTCAGTGGTTT
GTTTCCTCAGAAAATATTTCAACTCAAGAATATAAGAGTGCTTGATGTATCAGGCAACGGTGAACTCTCAGGGCA-TTTA
CCAGGATTTCCAAATGGGACTTCTTTGGAGACTTTGAATTTGTATTATACCAATTTCTCTGCTATTAGGCTGAGCTCTTT
AAGCAACCTCCAGTCTCTGAGGGAGCTAGGTATTAATGGAAGGTCAATTTCTATAGAGCCAACTGATTTATTGTTCAACA
AGTTCAACTCCTTGCAAAATTTACAGCTCTCTTTTTCTCAATTTCCGGGAGAGTTAGGACCATTTTTCTCATGGATTAGT
AGCCTTGAGAACTTGGCAAGCTTGCAACTCTCTAACTGCTATTCCTCCATGATAATGCCCCCTATGATTGGTAACCTCAC
CAACTTGACAAGTTTGGAAATAACTTATTGTGGCTTTATTGGGCAAATACCACCATCAATTGGCAACCTCAAGAAGTTGA
CTTCCTTGA-----------------------------------------------------------------------
-GAATCTATGCTTGTGACTTCTCTGGGACAATACCATCTTCAATTGGCAATCT---------------------------
---------------------------------------------CAAGAACCTAAGAATCTTAGAAATATCTCATAGTG
GCTTGTCTGGTCCAATAACAACGGATATTGGACATCTCAGCAACGTGATGGTATTAATTTTGGTGGGCTGCAGGTTTTCT
GGCATAATACCTAGTACAATTGCCAACTTGACTCAACTCATTTTGGTGGATCTTTCATACAATTTCCTTGAAGGTAAGGT
TCA-----------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3B_149
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACACCT
GTGGCTCCTTGCTCGTGAAAGAA----ACGGTGATATTTCACACAAAGAAGAAAAGAGGGGATGTTGTACTATATTGTTC
TTGGGAGTGGTGTTGCGG-------TTCACAGGTCTCAACGAAGTGATGGCTCGTGCTACTCGCCTACTTGCCTTCTTCA
TCCAGATACAACTCTACTCACTAGCCACATCTACCTCCCAC------------GGCCATGGTAACACATCAGCTGCTTTT
TACTGCCGTCCAGACCAGGCTGCAGCACTTCTCCAACTAAAGCAGTCCTTCATCTTCGACTACTCCACTACCACCCTGCC
GTCGTGGCAACCTGGTACCGACTGCTGCCTCTGGGAGGGCATCGGCTGCCATGGTGTATCTGGCAGCCGCAACAGCAGCA
GTGTCACAGTTCTTGACCTCGGCGGCGGTGGCCTCTACAGCTATGGCTGCCATGCCGCGCTCTTCAACCTCACCTCCCTA
CGCTACCTCGACCTCAGCATGAACGATTTTGGTGGATCTCGCATTCCGGCAGATGGCTTCGAGAGGCTATCCAAGCTCAC
TCACCTCAACCTTTCTTATTCAGGCTTCTACGGTCAGATTCCTATCGCCATCGGCAAACTCACAAGCCTCGTATCATTGG
ACCTTTCTTCAGTGCATAATATTGA---ATCAGCTGAAATCACAAATCTTTATGCTATCATGGATGGCTACAACCTTTTG
GTGTTACGAGAGCCCAGCTTTGAGACCTTACTGGCAAACCTCAACAATCTGAGGGAGTTGTACCTTGATGGAGTGGACAT
ATCTAGTAGCGGAGAGGAGTGGAGCAGTGCTCTAGGTAAAGCTGTCCCCCGTCTTCAGGTTCTTAGCATGGCGTACTGCA
AACTCAATGGTCCAATCCACTCTTCTCTGTCAAGTCTTAGATCCCTTACTGTGGTCAACCTCAAGCTTAATGATGGAATT
TCTGGTGCGGTACCTGAATTCTTCACGGACTTTCTCAATTTAAGTGTTCTTCAACTCAGCTATAACAACTTCAGTGGTTG
GTTTCCTCAGACAATATTTCAACTCAAGAATATAAGAGTCCTTGATGTGTCACACAACGAACAACTGTCAGGGCA-TTTA
CCAGAATTTCCAAGTGGGGCTTCTTTGGAGACTTTGAATCTACAGTACACTAATTTCTCTGGTGTCAGGCTGAGCTCTTT
TAGCAATCTTCTGTCTCTGAGTGAGCTAGGTCTTGAAGGAGGGTCAATTTCTATGGAGCCGAATGATTTATTTCTCAACA
AGCTCAACTCCTTGCAAAATTTGCAGCTCTCTTTTGCTCAATTTTCGGGAGAGTTAGCACCATTTTTCTCATGGATTAGT
AGCCTTAAGAACTTGACAAGCTTGCAACTCTCTGATTGCTATTCCTCCAAGATAATGCCCCCTTTGATTGGCAACCTCAC
CAACTTGACAAGTTTGGAGATGACTTTCTGTGGTTTCTTTGGGCAAATATCACCATCAATTGGGAACCTCAACAAGTTGA
CTTCCTTGA-----------------------------------------------------------------------
-GAATCTCTGATTGTGCCTTCTCTGGGACAATACCATCTTCAATTGGCAATCT---------------------------
---------------------------------------------CAAGAAACTAAGAAGATTGGAAATTTCTTATAGTG
AATTATCAGGTCCATTAACAACAGATTTTGGACATCTCAGCAATTTGACGGTATTAGTACTAACAGGCTGCAGGTTTTCT
GGCAGAATACCAAGTACAATTGTGAACTTGACTCAGCTGATTTATCTGGATCTTTCGCAGAATGATCTCAGAGGTAAGAT
TCA-----------------------------------------------------------------------------
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>chr3B_252
GTTCA---------------------------------------------------------------------------
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-----------------------------GAGGTCGAAGCGAACCAATGGCTTGTGCTATTCACCTAGTTGCCCTCTTCA
CATTGATACAACTCTATTCATTAGGTCCATCTACTTCCCATGCCCATGGCGCC---------------ACTGCTTCTTCC
GTCTGCCGTACGGACCAAGCTGCAGCACTTCTCCAACTAAAGCAGTCCTTCATCTTCGACTACTCCACCACCACACTGCC
GTCGTGGGAGCCTGGTACTGACTGCTGTCAGTGGGAGGGCGTCGGCTGTGATGATGGCGTATCTGATGACG---GCGGCG
GTGTCACTGTTCTTGACCTCCGTGGCTGTAGCTTCTACAGCTATGGCTTGCATGCCGTGGTCTTCAACCTCACCTCCCTG
CGATACCTCGACCTCAGCATGAACGATTTTGGTGGAACTCGCATTCCACCAGCTGGCTTCGAGAAGCTAACAAAGCTTAC
TCACCTCAAACTTTCATGTTCAGGCTTGTACGGTCAGATTCCTATCGCCATTGGCAAACTCACAAACCTCGTAACACTGG
ATTTTTCTGATGAGCATAATATTGATGTTTCGTATACAAGCCCTAGTTACTCTGCTTTCTTGAGTGGCTATAACAAGCTG
CTGCTACGAGGGCCCAGCCTTGAGACCTTACTGGCAAACCTCACCAACCTGAGGGAGTTGTACCTTGACGGAGTGGACAT
ATCAAGTAGTGGAGAAGAGTGGTGCAATGGTCTAGGTAAGGTTGTCCCCTATCTTCAGGTTCTTAGCATGGCAGATTGTC
ACCTCCAAGGTCCAATACACTCCTCTCTGTCAAATCTCCGATCCCTTACCACGGTCAACGTTCATGACAATGAG---ATT
TCTGGTGTGGTGCCTGAATTCTTCACAGACTTTCTCAATTTAAGTGTTCTTCAACTTGCGGACAACAGTTTCAGTGGTTG
GTTTCCTCAGACAATATTTCAACTCAAGAATATAAGAGTGCTTGATGTGTCAGGCAACAGTCAACTCTCGGGACA-TTTA
CCAGAATTTCCAAATGGGTCTTCTTTCGAGACTTTGAATCTACAGTCTACTAATTTCTCTGGTATCAAGATGAGTTCATT
TAGCAACATCCTGTCTCTGAGGGAGCTAGGTTTTGATGGAAGGTCAATTTTTGTGGACCATACGGATTTACTGTTCAACA
AGCTCAACTCTTTGCAAAACTTGCAGCTCTCTTTTGCACAATTTTCTGGGGAGTTAAGGCCATTTTTCTTGTGGATTAGT
AGCCTTAAGAATTTGACAAGCTT---------------------------------------------------------
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>chr7A_2317
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------------------------------------------------------------------------------AA
ATTCTTCCAGCCTTTATCACATACATTTCAAAGAATTGCACAATAATTCATCAAGCATTCGAAAGATTCAAATTCAACGT
ACACAACAAATCGACCATATAAACATGCATATAGTTCATATCATCGAGAAATTCAAATTAAAACATGCACAAAGTTCATC
CAAAAGGCACCACGTCGATCAAGTTTGATCCAAAATCACCACAACATTGCATGTCTTATGTCGTGGATTCAGCCCTACCA
AAGGCATGTTTCGGCTGAACGTTCAAAGCACTTTCGTGCTCATCATCTCCA------------------------AAGAA
AACATCAGCACCCCCACGGCCACCATCATCATCACCTCCATAGACAC---------------------------------
------CACCATCACCCCCATGGCCACCACCATCACCCCCACGAGAGGCCTCCGATTGGGCTATGATCTTTAAACGAGTG
AGTTCCCAATACTTCCTTGCCGTGGCATCCATCGCGTTAGGGTCCAT--GAACATGATAACCCTCTCTTCGGCCTTCTTA
TCTTTTGCAAGCCTTTCCTCCTTGAGTGCAATCCTACACTCCTCCTCCTTCACCTTCCTCTCTTCGGCCACCAACTTGGG
CCTCCACTTCTCGTCCTCCAAGCACTTGAGCTCGTTCCACTTTGTCGTCCT---TTCTTTGCGTTTGGCTGCCAATGCTT
TCTTGCTCTCAATCATAGCATCAAGCTCCTCTTTGTAGGCGTCGACGCCTCCATGCTTCTTCCTCTCTTTTGCAA-----
------------------------------------------------------------------
>chr7D_2317
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------------------------------------------------------------------------------AA
ATTCTTCCAGCCTTTATCACATACATTTCAAAGAATTGCACAATAATTCATCAAGCATTCGAACGATTCAAATTCA-CGT
ACACGACAAATCGACCATATAAACATGCATATAGTTCATATCATCAAGAAATTCAAATTAAAACATGCACAAAGTTCATC
CAAAAGGCACCACATCGGTCAAGTTTGATCCAAAATCACCACAACATTGCATGTCTTATGTCGTGGATTCAGCCCTACCA
AAGGCATGTTTCGGCTGAACGTTCAAAGCACTCTCGTGCTCATCATCTCCA------------------------AAGAA
AACATCACCACCCCCACGGCCACCACCATCATCACCTCCATAGACAC---------------------------------
------CACCATCACCCCCATGGCCACCATCATCACCCCCACGAGAGGCCTCCGATTGGGCTATGATCTCTAAACGAGTG
AGTTCCCAATACTTCCTTGCCGTGGCATCCATCGCGTTAGGGTCCAT--GAACATGATAACCCTCTCTTCGGCCTTCTTA
TCTTTTGCAAGCCTTTCCTCCTTGAGTGCAATCCTACACTCCTCCT---TCACCTTCCTCTCTTCGGCCACCAACTTGGA
CCTCCACTTCTCGTCCTCCAAGCACTTGAGTTCGTTCCGCTTCGTCGTCCTGTCTTCTTTGCGTTTGGCTGCCAGTGCTT
TCTTGCTCTCAATCATAGCATCAAGATCCTCTTTGTAGGCGTCGACGCCTCCATGCTTCTTCCTCTCTTTTGCAA-----
------------------------------------------------------------------
>chr7D_2317
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------------------------------------------------------------------------------AA
ATTCTTCCAGCCTTTATCACATACATTTCAAAGAATTGCACAATAATTCATCAAGCATTCGAACGATTCAAATTCA-CGT
ACACGACAAATCGACCATATAAACATGCATATAGTTCATATCATCAAGAAATTCAAATTAAAACATGCACAAAGTTCATC
CAAAAGGCACCACATCGGTCAAGTTTGATCCAAAATCACCACAACATTGCATGTCTTATGTCGTGGATTCAGCCCTACCA
AAGGCATGTTTCGGCTGAACGTTCAAAGCACTCTCGTGCTCATCATCTCCA------------------------AAGAA
AACATCACCACCCCCACGGCCACCACCATCATCACCTCCATAGACAC---------------------------------
------CACCATCACCCCCATGGCCACCATCATCACCCCCACGAGAGGCCTGCGATTGTGCTATGATCTCTAAACGAGTG
AGTTCCCAATACTTCCTTGCCGTGGCATCCATCGCGTTAGGGTCCAT--GAACATGATAACCCTCTCTTCGGCCTTCTTA
TCTTTTGCAAGCCTTTCCTCCTTGAGTGCAATCCTACACTCCTCCT---TCACCTTCCTCTCTTCGGCCACCAACTTGGA
CCTCCACTTCTCGTCCTCCAAGCACTTGAGCTCATTCCGCTTCGTCGTCCTGTCTTCTTTGCGTTTGGCTGCCAGTGCTT
TCTTGCTCTCAATCATAGCATCAAGATCCTCTTTGTAGGCGTCGACGCCTCCATGCTTCTTCCTCTCTTTTGCAA-----
------------------------------------------------------------------
>chr5B_2319
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ATTCTTCTAGCCTTTGTCATATACATTTCAAATAATTGCATACTATTTCATCATCCATTCGAATGATTCAAATTGAACAT
ACACACCAGATCAATA--ATAAACATGTATATAGTTCATCTAATCGAGCAATTCAAATTAAAAGATGCATAGACTTCATC
AAAAAGGCACCATAGTGACCAAGTTTGACCCAAAATCACCACAACATAGTATGTCTTATGTCATGTATCAAGCCCTACCA
AAGGCATACTATACGTA-----------------------------CTCAAGCACTTTCATGCTTATCACCTCCAAGAAA
ACCATCACCACGCCCACGGCCACCACCATCA---CCTCCAAGAAAAC---------------------------------
------TATCACCATCGCCACGGCCACCACCATCGCCCCCAAGAGAGACCTCGGATTAGGCCATGATCTCCACACGAGTG
AGCTCCCAATACTTCCTTATCGTGGCATTGATCATGCATGGGTTCAT--GAACATGATAGCCTGCTCTTTGGCCTTCTTC
TGTTTTGCAAGCCTCTCCTCCTAGAGAGGAATCC----------------------------------------------
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------------------------------------------------------------------
>SNPs
SSSS-SSSSSSSSSSSSSSSSSS-------------S----S---S--S----S-S------------------------
---S-S------------S-S-----------------SSSSSSS----------------S----S-------------
-------S-----S-----------------------------------------S-----S-S----------------
-SS-----SS--SSS------S------------------S-------------------------S-----S------S
---------------SS--S-----------S----------S-SS----------------------------------
-----------S---------S-S----------S------------------------------------S--------
---------------------S--------------S--------------------------------------S---S
----------S--------------------------S--S-------------S-S-----------------------
------------------S--------------SS-----S---------------S---S---S---------------
S---------------S----------------------------S---------S----------------S--S----
-------SS-S---SS--SS---SSSSSS--------------------------------------S-------S---S
---------------------SS----S-S--------------------------------------------------
-----------------SS------------------S-----------------S--------------S----S----
-----------------------------------------------------------S----S-------SS------
---------S-----------------------------------------S--------------S----S--------
--------SS-SS-S---------------S--------------------------S----------------------
-S--------------SS----S---------------------S------SSS-----S------S-SS-S--------
------------S-------------------------------------------S------S----------S-S---
-S---S-S------------S----S------SS--SSSS-----S------S------S------------------S-
----------S-----------------------------------------------S-S-S---SS------------
---S-----S-----S--S---S---S-----S---S----------------S----S---------------------
-S-----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--------S--S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
------------S----S--S--SS-------S-------S-SS----S-S-S-------------------S---S-S-
---------------SS-----------------------S------S--S------------------S----------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---------S-S--------S--S--------S--------SS-----------S--S----------------S-----
------------------SS-S---------------------------------------------------S------
-S-------S--------------------------------------S--------------------S----------
---S-SS-------SS----------------------------------------------------------------
-S----------------S---S-----S-----S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------S------SS----------S-S-S-----------S-------S--------------------
-------------------S--S---------------S--------SS-----------S-S----S------------
----------------------SS------------SSS----SSS--SS---------S--------------------
-----------S-S--S-----S---S-------S-----S------S-S-S-----S---S---S--------------
-----S--------------SS-S-------S---------------------S-S-----S-------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TGGCTTGTGCTACTCACCTG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CGACATCCCTAGCCATTCCC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
