>input_sequence_60483
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-------------------------------------------------ATGGCCGCCATCTTCTCCGCCTCCGGTCACC
GCCTGCTCTCCACCGCCGCTGCGGCTGCCGAGTTCCCCGTCCCGATGGCCCGCATCCGCAACCTCGCCCGCGCGGGCCGC
CTCGACGACATCGACGCCGCCGTCGCGCCGCTCGTGCCGACCAACCCCAAAGCTGTGATCTCCGCCCTCTCCGTGGTCGG
CCTCTCCGACCGGGCCTCCGCCATCCTCTCCACCATCCCGTCGCCCACCGCCGAGCATCTCAATGCCCTCCTCGCCCCGC
TCCTCCGCCGCCGCCGCCTCGCCGAGCGCGTGCCTGCTCTGTTGGACGCGCACCCCTCAGCGCCGCGCGACGCCTTTACG
TGGTCCATCCTCGCCAAGTCCCTCTGCATCACCAAAGGCGCCGACCACGCGGTGTACCTCCTCCACGGGGAGGAGCCGCC
TTCCCTCCACCTCTACACGGCCATCATCGACTCCTACTACAAGCAAAAGAAGCCCCACCGCGCCGAGGAGCTGTGGCGCG
AGATGGTCGAGGAACGCGGCATAGCGCCTGACGCTGCCGCTTACAACGTCAGGATCACCTACAAGTCGGCAACCGGCACG
GTGGAGGAGGTGCAGGAGCTTATCCGAGCCATGGGCGAGGACTCGGGGCTGCGGCCGGATGTCATCTCCTACAATGGGCT
GATCCGGGTGCTGGGGCGGCACAAGAGGGTGGACGAGGCCCTGGAGGTATACAGGAGCTTGCAAGAGAAGGGGGC---GG
AGGGGAACACTGAGGCGAAGTCGGCACCGGAGTGCGCAACATACGCATGCATGGTGGGGGCGCTGTGCAGCGAGGGGAGG
TTGTCAGAGGCGGAGGACGTGTTCTACGAGGGGGTAAAGCGCAAGAAGGTGGCAGATCTGGGCACGGTGCGTAAGCTGGT
AGTGGCTCTCAAGGAGGCTGGCAAGGGTCGGGCGGCGAGGCGGGTGGTGGTCGGGCTACGCAAGAAGTTCCCTGACCAGT
TCGACGGTCCATGGAAGGAGCTTGAGAAGGATGCCGGCCTCACACCGGGTGCCAGCAACGAAGAGGAGGAAGTGGAGGAG
GACGAGCAGCAGCCAGAGAAGACGGCGGCGGCGGCATGA-----------------------------------------
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>chr3A_1_TraesCS3A01G222000
AGGGTACGTGGACACACTCTCTCCTCTCGTTGCTATGCATCACCATGATCCTGTATAGCTTATGGTATGATTTCGTCATA
TACCATAATAAACAAAATTGACACGAATTTGAAACCGACCTAATAATAATTTACTGTTTTTTGTCTCAAAACACATTTTT
TATAAGTATATATATTCATGCATGGATCATGCCTTGATGGTTATGGACGAGCTTAGTATGTTTTTAAGAGAAAAATGATA
CATTACAAGAAAAATGGATGTGCTCAGCGGGAAAAATAGCTCCTTGAACAAGAAAAATTACATTTCTCTCCATAGCTGTA
AAGTGGG----TAGGGGAATCTGAGCGATTGGTTGGTGCTTACAAACTAGACACTGATCTAGCACCATATGCATGTTGAG
AGAACTGTTAGTAGTGGGGATCAACTTCTTAAAAACACAGGATGACTACTTGAATGGTTGTTTGCCTCAAGAAATATAAA
TATATTTTTACTTCAATTTATTCGGTTAACCTTTCAATTTTTTGGTATCTATCATTAAAACCTAAATTCAAAATGGTATG
GAAAGTTCATATCATAACAGTGAAACCTAGAAACCATAAAAATCATAAAATTGGTCAATTTGGTTTTAGAATGCACAAAG
TGATC-ATTACAATGTTGCAACCCAAGGATCCATAAGCTAGATATACATGGAAGAAATTTTGTTCCGTTGCAACGCACGG
GTATATTTGCTTTTTTT-------------------------------TGCTAGTAAGTCTTGTTA--------------
------------------ATATATAAAAATAAATTTGGCTAGTGGCCATGGCCCACTTTAGCCCTATCAAACTCCACGGC
TCCAACTCAACGGGGTGAAGGATAAGTATTGGGCCGGGGATTGGCCCGGGATTCCAACGCGGGCCTGCCACCCACTCAGC
ACTCCATTCCATTGTCCAACTTCCATCCATTTCCCAGATGACACAATCCGCCGAGTG---------------------AA
ACCCTAACCCCGGAACCTCGGATCGATCAGACACAGCTCCGCCGCAGCAATGGCCGCCATCTTCTCCGCCTCCGGTCACC
GCCTGCTCTCCACCGCCGCTGCGGCTGCCGAGTTCCCCGTCCCGATGGCCCGCATCCGCAACCTCGCCCGCGCGGGCCGC
CTCGACGACATCGACGCCGCCGTCGCGCCGCTCGTGCCGACCAACCCCAAAGCTGTGATCTCCGCCCTCTCCGTGGTCGG
CCTCTCCGACCGGGCCTCCGCCATCCTCTCCACCATCCCGTCGCCCACCGCCGAGCATCTCAATGCCCTCCTCGCCCCGC
TCCTCCGCCGCCGCCGCCTCGCCGAGCGCGTGCCTGCTCTGTTGGACGCGCACCCCTCAGCGCCGCGCGACGCCTTTACG
TGGTCCATCCTCGCCAAGTCCCTCTGCATCACCAAAGGCGCCGACCACGCGGTGTACCTCCTCCACGGGGAGGAGCCGCC
TTCCCTCCACCTCTACACGGCCATCATCGACTCCTACTACAAGCAAAAGAAGCCCCACCGCGCCGAGGAGCTGTGGCGCG
AGATGGTCGAGGAACGCGGCATAGCGCCTGACGCTGCCGCTTACAACGTCAGGATCACCTACAAGTCGGCAACCGGCACG
GTGGAGGAGGTGCAGGAGCTTATCCGAGCCATGGGCGAGGACTCGGGGCTGCGGCCGGATGTCATCTCCTACAATGGGCT
GATCCGGGTGCTGGGGCGGCACAAGAGGGTGGACGAGGCCCTGGAGGTATACAGGAGCTTGCAAGAGAAGGGGGC---GG
AGGGGAACACTGAGGCGAAGTCGGCACCGGAGTGCGCAACATACGCATGCATGGTGGGGGCGCTGTGCAGCGAGGGGAGG
TTGTCAGAGGCGGAGGACGTGTTCTACGAGGGGGTAAAGCGCAAGAAGGTGGCAGATCTGGGCACGGTGCGTAAGCTGGT
AGTGGCTCTCAAGGAGGCTGGCAAGGGTCGGGCGGCGAGGCGGGTGGTGGTCGGGCTACGCAAGAAGTTCCCTGACCAGT
TCGACGGTCCATGGAAGGAGCTTGAGAAGGATGCCGGCCTCACACCGGGTGCCAGCAACGAAGAGGAGGAAGTGGAGGAG
GACGAGCAGCAGCCAGAGAAGACGGCGGCGGCGGCATGAGCATTCCGGGCAACATCTGGAGGTGACCATTTTGTACTTGT
TTGATGAATCGTGAGGCAGTATGCCGGTTTAATAAGTAAA-----TTTTTCTGAGGTTACAATAGACACTCATACATAGT
TTTTGGATGCGGTGCCTCGCGGCAGCAACGATCCATAGCCTATATTTGTGTACCTGTTGTCCAACTGCCGACTTGCTACT
GAATGCCAGGGCCTTTTAGACGAAGTGCATTCCTATATTGGTAGTTGAATTTACACGCCTCATGATGGATTTGCTTTCGC
TGATGAGTGA-CCTTATCCATACCAGTAGATGTCGAACTGTATCCATATCAGTATAGGTATTTTGCTGCTCCCTTTTCAG
TTCACTGCTGAAGAACAACACTCACCGCTGTGAATTCTCCGTCCTGCCTTGTTCTTGTTTTTTCTCCCGTGCTTTCATTT
GCATCACAAATTGCCAAGACCACATTCAGGAATCTGCAGGCTCGTACTAACTGGTACATAATGGTTGCTGGTTTGGTTTG
CCAGCTAATGTCGCCGGGCTTGTCTCGG-CCTAGCACTTTGGCGAACGATGAGAATTTC-AGAGAAATTGTACAGAAACA
CGTGTTCAACTCAACTTGAGGAGTGGAGCCATTCCCACCGGCCGCAAGGTTCTTGGATTGCGAGGAATGCCCAGCAACTG
AATCATGGAGGGTGTGCATTTGGTGAGGACCCAATAGAATAGAATACCATGATTTCATTACAGCGTAATGGAATTCTCCA
TTCATTCATGTGTGTGGTTGGAGTCAGTAGAGTGAAACGTAATGGTTTCATTTTTGTGTTTGGTAGGAGAGATAGATGGA
ATGGATTTGATTCAGCCTCATCCCTAGAGAATATGGGTGTGAATATATTCTCTCCGTTCCTAAATATAAATCTCTGTAGA
GATTCCACTATAGACGACATAAGTCAAGAATCATCAACCGGCAGACGCATCAAGCACAAGTCACTTGCAGATCAAGAGAA
AGCCCAT
>chr3B_272
AAAAATTG------------------------------------------------------------------------
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--------------------------------------GCTCCTTGTACAAAAAAAATTACATTGCTCTCCATAGGTGTA
AGGTTACACCATAGGGGAATTCGAGCGATTGGTTGGTGCTCACAAACTAAACACTGACGTGGCACCATATGCATGTTGAA
ATAATTGTTAGTAGTGGGGATCAACTTCTGAAG------GGATGACTACTTGAATG-TTGTTCGACTCAAGACATATACA
TATATATTTACTTCAATTTATTCGGTTAACCATTCAATTTTTTGGTATATACCATTAAAACCGAAATTCAAAACGGTATG
GGGAGTTCATATCATAATAGCGAAAATCAGAAACCATAAAAATCGTAAAATTTGTCGGTTTGGTTTTAGAATGCACAAAG
TTATCTATTACGATGTTGCAACCCAAGGATCCATAAGCTAG--ATACATGGAAGAAATTTTGTTCCGTTGCAATGCACAG
GTATATTTGCTTTTTTTAACATAGTACAGACGCAAGCGCTCATGTATATGCTAGTAAGTCTTAAATGCGAGTAGTTAATT
TTTTTTAGCTGAGAGAGTATATAAATAAATAAATTTGGCTAGGGGCCATGGCCCACTTTAGCCCTAACAAACTCCACGGC
TCCAACT---CGGGGTGAAGGATAAGTATTGGGCCGGGGACTGGCCCGGGATTCCAACGCGGGCCTGCCACTCACTCAGC
ATTCCATT-----GTCCAACTTGCATCCATTTCCCAAATGACACAATCCGCCGAGTGAAACTTTCCCCCACTCGTCCTAA
ACCCTAACCCCGGAACCTCGGATCGATCAGACACAGCTCCGCCGCAGCAATGGCCGCCATCTTCTCCGCCTCCGGCCGCC
GCCTGCTCTCCACCGCCGCTGCGGCTGCCGAGTTCCCCGTCCCGATGGCCCGCATCCGCAACCTCGCCCGCGTGGGCCGC
CTCGACGACATCGACGCCGCCGTCGCGCCGCTCGTGCCGACCAACCCCAAAGCCGTGATCTCCGCCCTCTCCGTGGTCGG
CCTCTCCGACCGGGCCTCCGCCATCCTCTCCACCATCCCGTCGCCCACCGCCGAGCATCTCAACGCCCTCCTGGCCCCGC
TCCTCCGCCGCCGCCGCCTCGCCGAGCGCGTGCCTGCTCTGCTGGACGCGCACCCCTCAGCGCCGCGCGACGCCTTTACG
TGGTCCATCCTCGCCAAGTCCCTCTGCATCACCAAAGGCGCCGACCACGCGGTGTACCTCCTCCACGGGGAGGAGCCGCC
TTCCCTCCACCTCTACACGGCCATCATCGACTCCTACTACAAGCAAAAGAAGCCCCACCGCGCCGAGGAGCTGTGGCGCG
AGATGGTCGAGGAACGCGGCATCGCGCCCGACGCTGCCGCTTACAATGTCAGGATCACCTACAAGTCGTCAACCGGCACG
GTGGAGGAGGTGCAGGAGCTTATCCGAGCCATGGGCGAGGAGTCGGGGTTGCGGCCGGATGTCATCTCCTACAATGGGCT
GATCCGGGTGCTGGGGCGGCACAAGAGGGTGGACGAGGCCCTGGAGGTATACAGGAGCTTGCAGGAGAAGGGGGT---GG
AGGGGAACACTGAGGCGAAGTCGGCACCGGAGTGCGCAACATACGCATGCATGGTGGGGGCGCTGTGCAGCGAGGGGAGG
TTGTCAGAGGCGGAGGACGTGTTCTACGAGGGGGTAAAGCGCAAGAAGGTGGCAGATCTGGGCACGGTGCGTAAGCTGGT
AGTGGCTCTCAAGGAGGCTGGCAAGGGTCGGGCGGCGAGGCGGGTGGTGGTCGGGCTACGCAAGAAGTTCCCTGACCAGT
TCGACGGTCCATGGAAGGAGCTTGAGAAGGATGCCGGCCTCACACCGGGAGCCAGCAACGAAGAGGAGGAAGTGGAGGAG
GACGAGCAGCAGCCAGAGAAGACGGCGGCGGCGGTATGAGCATTCGGGGCAACATCTGGAGGTGACCATTTTGTACTTGT
TTGATGAATCGTGAGGCAGTATGCCGGTTTAATAAGTACTCCAATTTTTGCTGAGGTTACAATAGACACTCATACATAGT
TCTTGGATATGGTGCCTCGCGGCAGCAACGATCCATAGCCTATATTTGTGTTCCTGTTGTCCAACTGCCGACTTGCTACT
GAATGCCAGGGCCTTTTAGACGAAGTGCATTCCTATATTGGTACTTGAATTTACACGGCTCATGATGGATTTGCTTTCGC
TGATGAGTGAACCTTATCCATACCAGTAGATGTCGAACTGTATCCATATCAGTATAGGTATTTTGCTGCTCCCTTTTCAG
TTCACTGCTGAAGAACAACGCTCACCGCTGTGAATTCTCCGTCCTGTCTTGTTCTTGTTTTTTCACCCGTGCTTTCATTT
GCATCACAAATTCCCAAGACCACATTCAGGAATCTGCAGGCTCGTACTAACTGATACATAATGGTTGCTGGTT-GGTTTG
CCAGCTAATGTTTGCCAGCTAACTCGT--------ACTTTGGCGAACGGTGAGAATTTTTAGAGAAATTGTACAGAAACA
--------------------GAGTGGAGCCATTCCCACCGGCCGCAAGGTTCTTCGATTGCGAGGAATGCCCAGCTACTG
AATCATGGAGGGTGTGCATTTGGTGAGGAACCAATAGAATAGAATACCATGATTTCATTACAGCGTAATGGAATTCTCCA
TTCATTCATGTGTGTGGTTGGAGTCAGTAGAGTGAAACGTAATGGTTTCCTTTTTGTGTTTGGTTGGAGAGATAGATGGA
ATGGATTTGATTCAGCCTCATCCCTAGAATATGGGTGGTGCAAATGTGTATATGCATGACTCAATTCACATTGTTTCCTG
ATGAACAATACACATATACCAGTCA---AATCATCAACCGGCACACGCATCAAGCAAAAGGCACTTGCAGATCAAGCTAA
AACCCAT
>chr3D_760
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---------------------------AATAAATTTGGCTAGGGGCCATGGGCCACTTTAGCCCTAACAAACTCCACGGC
TCCAACT---CAGCG---AGGATAAGTATTGGGCCGGGGACTGGCCGGGGATTCCAACGCGGGCCCGCCAGCCACTCAGC
AC------------TCCAACTTGCATCCATTTCCCAAATGACACAATCCGCCGAGTGAAACTTTCCCCCACTCGTCCTAA
ACCCTAACCCCGGAACCTCGGATCGATCAGACACAGCTCCGCCGCAGCAATGGCCGCCATCTTCTCCGCCTCCGGCCGCC
GCCTGCTCTCCACTGCCGCTGCGGCTGCGGAGTTCCCCGTCCCGATGGCCCGCATCCGCAACCTCGCCCGCGCGGGCCAG
CTCGCCGACATCGACGCCGCCGTCGTGCCGCTCGTGCCGACCAACCCCAAAGCCGTGATCTCCGCCCTCTCCGTGGTCGG
CCTCTCCGACCGGGCCTCCGCCATCCTCTCCACCATCCCGTCGCCCACCGCCGAGCATCTCAACGCCCTCCTGGCCCCGC
TCCTCCGCCGCCGCCGCCTCGCCGAGCGCGTGCCTGCTCTGCTGGACGCGCACCCCTCGGCGCCGCGCGACGCCTTTACG
TGGTCCATCCTCGCCAAGTCCCTCTGCATCACCAAAGGCGCCGACCACGCGGTGTACCTCCTCCACGGGGAGGAGCCGCC
TTCCCTCCACCTCTACACGGCCATCATCGACTCCTACTACAAGCAAAAGAAGCCCCACCGCGCCGAGGAGCTGTGGCGCG
AGATGGTCGAGGAACGCGGCATCGCGCCCGACGCTGCCGCTTACAATGTCAGGATCACCTACAAGTCGGCAACCGGCACG
GTGGAGGAGGTGCAGGAGCTTATCCGAGCCATGGGCGAGGAGTCGGGGCTGCGGCCGGATGTCATCTCCTACAATGGGCT
GATCCGGGTGCTGGGGCGGCACAAGAGGGTGGACGAGGCCCTGGAGGTATACAGGAGCTTGCAGGAGAAGGGGGCGGCGG
AGGGGAACACTGAGGCGAAGTTGGCACCGGAGTGCGCAACATACGCATGCATGGTGGGGGCGCTGTGCAGCGAGGGGAGG
TTGTCAGAGGCGGAGGACGTGTTCTACGAGGGGGTAAAGCGCAAGAAGGTTGCAGACCTGGGCACGGTGCGGAAGCTGGT
AGTGGCTCTCAAGGAGGCTGGCAAGGGTCGGGCGGCGAGGCGGGTGGTGGTCGGGCTACGCAAGAAGTTCCCTGACCAGT
TCGACGGTCCATGGAAGGAGCTTGAGAAGGATGCCGGCCTCACACCGGGTGCCAGCAACGAAGAGGAGGAAGTGGAGGAG
GACGAGCAGCAGCCAGAGAAGACGGCGGCGGCGGTATGAGCATTCCGGGCAACATCTGGAGGTGACCATTTTGTACTTGT
TTGATGAATTGTGAGGCAGTATGCCGGTTTAATAAGTA---CAATTTTTTCTGAGGTTACAATAGATACTCATACATAGT
TTTTGGATGTGGTGCCTCGCGGCAGCAACGATCCATAG----TATTTGTGTTCCTGTTGTCCAACTGCCGACTTGCTACA
GAATGCCAGGGCCTTTTAGACGAAGTGCATTCCTATATTGGTAGTTGAATTTACACGGCTCATGATGGATTTGCTTTCGC
TGATGAGTGA-CCTTATCCATACCAGTAGATCTCGAACTGTATCCATATCAGTATAGGTATTTTGCTGCTCCCTTTTCAG
TTCACTGCTGAAGAACAACGCTCACCTCTGTGAATTCTCCGTCCTGCCTTGTTCTTGTTTTTTCTCCCGTGCTTTCATTT
GCATCACAAATTCCCAAGACCACATTCAGGAATCTGCAGGCTCGTACTAACTGATACATAATGGTTGCTGGTTTGGTTTG
CCAGCTAATATCTCCGGGCTTGTCTCGGCCCTAGCACTTGGGCAAACTGTGAGAATTTTTAGAGAAATTGTACAGAAACA
TATGTTCAACTCAAGTTGAGGAGTGGAG-CATTCCCACCGGCCGCAAGGTTCTTCGATTGCGAGGAATGCCCAGCTACTG
AATCATGGAGGGTGTGCATTTGGTGAGGACCCAATAGAATAGAATACCATGATTTCAGTACAGCGTAATGGAATTCTCCA
TTCATTCATGTATGTGGTTGGAGTCAGTAGAGTGAAACGTAATGGTTTCCTTTTTGTGTTTGGTTGGAGAGATAGATGGA
ATGGATTTTATTCAGCCTCATCCCTAGAATATGGGTGGTGAGAATAT---------------------------------
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>SNPs
-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----S------------S----------S----
-S--SSS-------------SS------------------S--------S-------SS-S------------------S
-S--S------------------------S--SSSSSSS-----------------S-----S-S-------S-----S-
-----S-------------------------S----------------S--S----------S----------S------
-SS--------------S--S----SSS----------------S-------S---SS----------------------
-S---------S-----------------------------SS------------------------------S----S-
--------------------------------------------------------------SSSS--------------
-----------------------S-S----------------S-----------------------S-------------
-------SSS------------------------------S---------------------------------------
--------SSSSS---------S-------------S-------------------------------------------
---------------------------------------------------------------------------S-S--
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-----------------------------------------------------S--------------------------
---------------------------------------------------------------S--------S-------
-----------------------------------------S--------------------------------------
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----------------------S-----S-----------------S---------------------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------------S----------------
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----------------------------------S---------------------------------------------
--------------------------------------SS----------------------------------------
---------S-----------------------------------------S----------------------------
---------------------------------------------------------S----------------------
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-------------------S------------------------------------------------------------
------------S----------------------------------------S--------------------------
------------S-----------------------------------S---------S---------------------
SS------------S---------------------------------------S--------------------S----
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-------------------------------------------------S--------------S---------------
----------------------------SS--SS-S-SSSS--SSSSS-S-S-S-S-SS--S---SS-S--SSS-SSSSS
SSSSS--S--S-S-SSSSSS-SSSSSSS---------------S------------S---S---------------SS--
-S-----
>forward_20
AGGGTACGTGGACACACTCT------------------------------------------------------------
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>reverse_1254
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-----------------------------------------------------TGTGATCTCCGCCCTCTCC--------
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>forward_25
-----ACGTGGACACACTCTCTCCT-------------------------------------------------------
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>reverse_1647
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----------------------------------------------CGTCAGGATCACCTACAAGTCG------------
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>forward_888
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--------------------------------------------------------------------AAACTCCACGGC
TCCAACTC------------------------------------------------------------------------
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>reverse_2195
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----------------------------------CATGAGCATTCCGGGCAACA--------------------------
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>forward_971
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-----------------------------------------------------------------------CCACTCAGC
ACTCCATTCCA---------------------------------------------------------------------
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>reverse_2815
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--------------CTTGAGGAGTGGAGCCATTCC---------------------------------------------
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