>input_sequence_60442
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------------------------------------------------------------------------CAAACCCT
CACCACTCACCTACAGCCAGCTGAGAAGAACGACTTGCAAGTTGTAACCACCTCTAGTCGGTAGACAAGCACCTCATCGC
CGGCGACAGGAACTAATGGCGGCTGCCATGAGCTACGTGCATGCCGACGTGGAGAACCTCAAGGCGACGGAGCTGAGGCT
CGGCCTGCCGGGCGTCGAGGAGAGCGACAAGATGCCGTCGCCGCCGTCCACTCCCAGGGCCGGCACCAAGCGCGCGCTCG
CCGGGGAGCACCGCGAGGAGGAGCCCAAGGCCGCGCCCCCGGCCGCCAAGGCGCAGGTGGTTGGGTGGCCGCCCGTGAGG
TCCTACAGGAAGAGCTGCTTCCAGCAGGCGAGCAGCAAGGCCAAGGCGGCCGCACCGGCACCTGTGGTAGTGAAGCAGGA
GGAGACGGCCGTTGCCGCGGCGCCGCCCGCCGCCGCTGCCGCGGGAGGATCACTGTACGTGAAGGTGAGCATGGACGGAG
CCCCTTACCTGAGGAAGATCGACCTCAAGATGTACAAGGGCTACCGCGAGCTCAGGGAGGCCCTGGAGGCCATGTTCCTC
GGCTTCTCCGGCGACGCAGGCAGTGTGAACCCGTCGGACTTCGCCGTGACCTACGAGGACAAGGACGGCGACCTCATGCT
CGTTGGCGACGTGCCCTTCGGGTAAGTTCATGCATCCAAGATAC---ATATGATTTGGTCTGGTTAGAGTTTGAAAAATT
TCAGTATGGTGTCTTATGAGGATCTCTTTGTCGATTTGCAGGATGTTCATGAGCACTTGCAAGAGGATGAGGATCATGAA
GGGATCCGAAGCAAGAGGCCTAGGATCATCAAAGGAGTGAAA-TGGAATCCATCTACGAAGAACACGCAACATGCCATGG
GTGCATGTGTGCAACATGGAGGAATTCTTTTGTTCTTTTGGGCATGTTGTCGACTCATCTACCACAGTGCTACTCTTCAA
GGCAAAGACGCAAGCTGATTCGAGTGGAGTTTTATTTTTATTTTGTTTTTT-TAAATAGGTGTTAGCAACACAAAAGGAG
TGGAGATCAGTTCGAGTTGAATCGGATCTCCATGTGTGTTTGTACAAAGAAAACAGCTTTCTTTCC--------------
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>chr5B_1_TraesCS5B01G058800
TCCCACCAGGAAAATGAATATACAAGCATCGGTTAGTTAAAGGAGCAGCACCATCACTGCAGTTCACAATACTTTGCAGT
TTCCATATAGAAAAAGAAAAGGTGAAGTGGTTAACAGTGCACTTTGCAAGGGAA-CTTTTGGACTAATTAAACAAGCTCC
CCTACCACTAGGGCCTGCTTTGCATAGGCAAAAGAAGCAAGGGCAGGGAAAAGAAGAAACAAAAGGTAGTGGGGAGAGAT
GCAGGTATATGATGAGGAGCATGCAATAGACAAGTGCCCATATACTCCATGTTACATTGTTCCATACATATCTTATTATT
GGGGAGAAGGGAGGAGACAGTTTTGTATTAGCCAAAGATGCTCCCCCAAGATCTCTAATGATAACATCCTAATCATGGCA
TTGGCGCCCTATTT--ATTTTATTTATTTAATC---AGGCTAAATTTCATCAGTGCTGTTTGAACCTTTCTAGATGACGG
GTCCGGGCA-CCGGTGCCAGGCCCAGATCCATGCCCGGCTCAACCGGGTTATGGGATCTTCATTCCTTATGGTAA-----
GTACATTTTGAGGATAATTGATATGGGGTCCAATTAGTAATGTACACGTACAGTGATCACGTACCGGGCTATCGGGTCAA
GTGCAGTAGTAAAGCAACGACCCGACCCGCCGGCACCCGAGAATCTCTAGTGGTACGCCTAGTGGAGCCGCGTGGGTCCC
GCCGGGTCGGGCCGCCCTGTCGCGGGTCGCCGCCGGCAAGGCCCCCATGGCTGCACCCCACCCCGCAACCACCCC--AGC
TACCTGTGGTAAGTGTGTGGACGCCGCACATGCGCGT------GGCCTCGGCTGTGGCACGTACGTGTGCGTGCATGTGG
ATGCATGTGGAGTTGGAGCC-----TCCCTCACACGGGCGCGCCACACGCCCGCCTATCTCTCCTCTCCTCTCCTCGTCG
CAGCAGGCCTACCACCCGGGGGCTCCGCTCTATAAAACATTTCCATGG-------AGAACCTCCACAGCTCACAAACCCT
CACCACTCACCTACAGCCAGCTGAGAAGAACGACTTGCAAGTTGTAACCACCTCTAGTCGGTAGACAAGCACCTCATCGC
CGGCGACAGGAACTAATGGCGGCTGCCATGAGCTACGTGCATGCCGACGTGGAGAACCTCAAGGCGACGGAGCTGAGGCT
CGGCCTGCCGGGCGTCGAGGAGAGCGACAAGATGCCGTCGCCGCCGTCCACTCCCAGGGCCGGCACCAAGCGCGCGCTCG
CCGGGGAGCACCGCGAGGAGGAGCCCAAGGCCGCGCCCCCGGCCGCCAAGGCGCAGGTGGTTGGGTGGCCGCCCGTGAGG
TCCTACAGGAAGAGCTGCTTCCAGCAGGCGAGCAGCAAGGCCAAGGCGGCCGCACCGGCACCTGTGGTAGTGAAGCAGGA
GGAGACGGCCGTTGCCGCGGCGCCGCCCGCCGCCGCTGCCGCGGGAGGATCACTGTACGTGAAGGTGAGCATGGACGGAG
CCCCTTACCTGAGGAAGATCGACCTCAAGATGTACAAGGGCTACCGCGAGCTCAGGGAGGCCCTGGAGGCCATGTTCCTC
GGCTTCTCCGGCGACGCAGGCAGTGTGAACCCGTCGGACTTCGCCGTGACCTACGAGGACAAGGACGGCGACCTCATGCT
CGTTGGCGACGTGCCCTTCGGGTAAGTTCATGCATCCAAGATAC---ATATGATTTGGTCTGGTTAGAGTTTGAAAAATT
TCAGTATGGTGTCTTATGAGGATCTCTTTGTCGATTTGCAGGATGTTCATGAGCACTTGCAAGAGGATGAGGATCATGAA
GGGATCCGAAGCAAGAGGCCTAGGATCATCAAAGGAGTGAAA-TGGAATCCATCTACGAAGAACACGCAACATGCCATGG
GTGCATGTGTGCAACATGGAGGAATTCTTTTGTTCTTTTGGGCATGTTGTCGACTCATCTACCACAGTGCTACTCTTCAA
GGCAAAGACGCAAGCTGATTCGAGTGGAGTTTTATTTTTATTTTGTTTTTT-TAAATAGGTGTTAGCAACACAAAAGGAG
TGGAGATCAGTTCGAGTTGAATCGGATCTCCATGTGTGTTTGTACAAAGAAAACAGCTTTCTTTCCGTGTTAAGCCATGT
CAATGGTTGGTTGATGTCTCCCTTGAGTTTGGTTATATCAAAGGTTGCAAGAAAATTTCACTCGGTGGCATCAGCTATTT
GCAATCATCTCAATGCATACTAAGCATGAACTTGACTCACTTAACCACTAAAATGCTGCAAAAAAGGGACCAAAATGTTA
CACAGACACGCGTGTC--------------CTCTCAGCATCAATCACTTGCAAAAAAGATGCATGGTTAAGCAAGCAAGG
CTCCAAAAA-TTTAAATGAGACAAATCTTGCAAGCAAGATCCAAACGAATGATGTGAACACAGGTATGGGGAATGCGTCC
AATTTCTTTTCCTTTCTCTTTTACCGAGTCCTTTGTCCGGGCAAATTTATTTACACGTGCACTGGAGATGAACAGGAACA
AGATTGGGCCACATGCATGAGCCACTTGTCAAAGTAGTGACAAAAGAGCAGAGTTAATTAGAGCATGGTTAATAGTATAG
CCAGCTGCTGGCTATAAGCCAGTGCCATGTCATCTATAGCCTATCTTATAGTCAACATGTACAATAGTAGATCAAAAGAG
TGTATTACTTTTTTATTATGTGGCCCACCTTTCATTCTCACAAAGTGCCTAGGAGCACGTGCTAGAACTGGCTCTTCACA
AGAGCCCGCTTATCTTCTCTCTCCTCTTCTCTTTCCTCCAACTAAGCAGAAATATACTAGTTTATTCTTTATAGCCCGCT
GACTCAGCTCTATTGTACTCGCTCTTAGCCAGCCCAGATGAAACAGTTACTACTAACCAGAGCCGGTCAAGAAACAGGCT
CTCCCCCTTGATGAGTAGTGCTAAATCTGGGTGTCTGCACTGCTGCTCCCATTCATTCATTCAGGGGTAACATGCACCGG
CCGGCCGGCCGACAGGGTACATGTGGTGCACATGAGTCTCGAGGTTGTGGTCAAGACTAGTTAGAGAGAGAAGATGAGAG
AGATGGAGAGCATCCAAAGCAACTCAAGAGTTGTATGTAGC
>chr5A_1
TCCCACCAGGAAAATGAATATACAAGCATCGGTTAGTTAAAGGAGCAGCACCATCACTGCAGTTCACAATACTTTGCAGT
TTCC--ATAGAAAAAGAAAAGGTGAAGTGGTTAACAGTGCACTTTGCAAGGGGAGCTTTTGGACTAATTAAACAAGCTCC
CCTACCACTAGGGCCTGCTTTGCATAGGCAAAAGAAGCAAGGGCAGGGAAAAGAAGAAACAAAAGGTAGTGGGAAGAGAT
GCAGGTATATGATGAGGAGCATGCAATAGACAAGTGCCCATATACTCCATGTTACATTGTTCCACACATATCTTATTATT
GGGGAGGAGGGAGGAGACAGTTTTGTATTAGCCAAAGATGCTCCCCCAAGATCTCTAATGATAACATCCTAATCATGGCA
TTGGCGCCCTATTTTTATTTTTTTTATTTTATCATCAAGCTAAATTTCATCAGTGCTGTTTGAACCTTTCTAGATGTCGG
GTCCGGGCACCCGGCGCCAGACCCGGATCCGTTCCCGGCTCAACCGAGCTATAAGGTCTTCATTCCATGCGAACTACACT
GTACATTTTGAGGATAATTGATGT--GGTCCAATTAGTAATGTACACGTAGAGTGATCACGTACCGGGCTATCGGGTCAA
GTGCAGCAATCCAGCAACTGCCCGACCCGCTGGCACCCGAGAATCTCTAGTGGTACGCCTAGTGGAGCCGCGTGGGTCCC
GCCGGGTCGGCCCGCCCTGTCGCGGGTCGCCGCCGGCAAGGCCCCCATGGCTGCACCCCACCCCGCAACCACCCCCCAGC
TACCTGTGGTAAGTGTGTGGACGCCGCACATGCGCGTGGCCTGGGGCTGGGCTGTGGCACGTACGTGTGCGTGCATGTGG
ACGCATGTGGAGTTGGAGCCTCCCTTCCCTCACACGGGCGCGCCACACGGCCGCCTATCTCG----------CCTCGTCG
CAGCAGGCCTACCACCCGGGCCGTC--CTCTATAAAACATTTCCATGGACCATGGCGAACCTCCACAGCTCACAAACCCT
CACCACTCACCTACAGCCAGCTGAGAAGAACGACTTGCTAGTTGCAACCACCTCTA----------------------GC
CGGCGACAGGAACTGATGGCGGCGGCCATGAGCTACGTGCATGCCGACGTGGAGAACCTCAAGGCGACGGAGCTGAGGCT
CGGCCTGCCGGGCGTCGAGGAGAGCGACAAGATGCCGTCGCCGCCGTCCACTCCCAGGGCCGGCACCAAGCGCGCGCTCG
CCGGGGAGCACCGCGAGGAGGAGCCCAAGGCCGCGCCCCCGGCCGCCAAGGCGCAGGTGGTTGGGTGGCCGCCGGTGAGG
TCCTACAGGAAGAGCTGCTTCCAGCAGGCGAGCAGCAAGACCAAGGAGGCCGCGCCGGCACCTGTGGTGGTGAAGCAGGA
GGAGGCTGCCGTTGCCGCGGCGCCGCCCGCCGCCGCAGCCGCGGGTGGATCACTGTACGTGAAGGTGAGCATGGACGGAG
CACCCTACCTGAGGAAGATCGACCTCAAGATGTACAAGGGCTACCGCGAGCTCAGGGAGGCCCTGGAGGCCATGTTCCTT
GGCTTCTCCGGCGACGCAGGCAGCGTGAACCCGTCCGACTTCGCCGTGACCTACGAGGACAAGGACGGCGACCTCATGCT
CGTCGGCGACGTGCCCTTCGGGTAAGTTCATGCATCCAAGATAC---ATATGATTTGGTTTGATTGGAGTTTGAAAAAT-
TCATTACGGTGTCTTATGAGGATCTCTTTGTTGATTTGCAGGATGTTCATGAGCACTTGCAAGAGGATGAGGATCATGAA
GGGATCCGAAGCGAGAGGCCTAGGATCATCAAAGGAGTGAAA-CGGAATCCATCTACGAAGAACACGCAACATGCCATGG
GTGCATGTGTGCAACATGGAGGAATTCTTTTGTTCTTTTGGGCATGTTGTCGACTCATCTACCACAGTGCTACTCTTCAA
GGCAAAGACGCAAGCTGATTCGAGTGGAGTTTTATTTTGTTTTTGTTTTAAAAAAATAGGTGTTAGCAACACAAAAGGAG
TGGAGATCCGTTCGAGTTGAATCGGATCTCCATGTGTGTTTGTACAAAGAAAACAGCTTTCTTTCCGTGTTAAGCTATGT
CAATGGTTGGTTGATGTCTCCCTTGAGTTTGGTTATATCAAAGGTTGCAAGAAAATTTCATTCGGTGGCATCAGCTATTT
GCAATCATCTCATCCCATACTAAGCATGAACTTGAGTCCCTTAATCACTAA--TGCTACAAAAAAGAGACCAAAATGCTA
TACAGAT-------TC--------------CTCTCAGCATCAATAACTTGCAATCAAAAAAGAAGGTTAACCAAGCAAGG
CTCCAAATTTTTTAAATGAGACAAATCTTGCTAGCAAGATCCAAATGAATGATGTGAACACAGGCATGGGGAATGCGTCC
AATTTCTTTTCCTTTCTCTTTTACCGAGTCCTTTGTCCGGGCAAATTTATTTACACGTGCACTGGAGATGAACAGGAACA
AGATTGGGCCAAATGCATGAGCCACTTGTCAAAGTAGTGACAAAAGAGCAGAGTTAA-----------------------
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------------------------TTAGCCAGCCCGGATGAAACAGTTA------ACCAGGGCTGGTCAAGAGACAGACT
CTCTTCCTTGATGAGTAGTGCTAAATCTGGGTGTCTGCACTGCTGCTCCCATTCATTCATTCAGGGGTAACATGCACCGG
CCGGCCGGCCGACAGGGTACATGTGGTGCACATGAGTCTCGAGGTTGTGGTCAAGACTAGTTGGAGAGAGAAGATGAGAG
AGATGGAGAGCATCCAAAGCAACTCAAGA------------
>chr5D_4
---CACCAGGAAAATGAATATACAAGCATCGGTTAGTTAAAGGAGCAGCACCATCACTGCAGTTCACAATACTTTGCAGT
TTCC--ATAGAAAAAGAAAAGGTGAAGTGGTTAACAGTGCACTTTGCAAGGGAA-CTTTTGGACTAATTAAACAAGCTCC
CCTACCACTAGGGCCTGCTTTGCATAGGCAAAAGAAGCAAGGGCAGGGAAAAGAAGAAACAAAAGGTAGTGGAGAGAGAT
GCAGGTATATGATGAGGAGCATGCAATAGACAAGTGCCCATATACTCCATGTTACATTGTTCCATACATATCTTATTATT
GGGGAGGAGGGAGGAGACAGTTTTGTATTAGCCAAAGATGCTCCCCCAAGATCTCTAATGATAACATCCTAATCATGGCA
TTGGCGCCCTATTT--ATTTTATTTATTTAATC---AAGCTAAATTTCATCAGTGCTGTTTGAACCTTTCTAGATGACGG
GT------A-CCGGTGCCGGGCCCAGATCCATGCCCGGTTCAACCGGGT------------------TATGGTAA-----
CTACATTTTGAGGATAATTGATATGGGGTCCAATTAGTAATGTACACGTACAGTGATCACGTACCGGGCTATCGGGTCAA
GTGCAGCAATCCAGCAACGACTCGACCCGCCGGCACCCGAGAATCTCTAGTGGTACGCCTAGTGGAGCCGCGTGGGTCCC
GCCGGGTCGGCCCGCCCTGTCGCGGGTCGCCGCCGGCAAGGCCCCCATGGCTGCACCCCACCCCGCAACCACCCC--AGC
TACCTGTGGTAAGTGTGTGGACGCCGCACATGCGCGT------GGCCTGGGCTGTGGCACGTACGTGTGCGTGCATGTGG
ACGCATGTGGAGTTGGAGCC-----TCCCTCACACGGGCGCGCCACACGCCCGCCTATCTCG----------CCTCGTCG
CAGCAGGCCTACCACCCAGG----C--CTCTATAAAACATTTCCATGG-------CGAACCTCCACAGCTCACAAACCCT
CACAACTCACCTACAGCCAGCTGAGAAGAACGACTTGCAAGTTGTAACCACCTCTAGTCGGTAGACACGCACCTCGTCGC
CGGAGACAGGAACTGATGGCGGCTGCCATGAGCTACGTGCATGCCGACGTGGAGAACCTCAAGGCGACGGAGCTGAGGCT
CGGCCTGCCGGGCGTCGAGGAGAGCGACAAGATGCCGTCGCCGCCGTCCACTCCCAGGGCCGGCACCAAGCGCGCGCTCG
CCGGGGAGCACCGCGAGGAGGAGCCCAAGGCCGCGCCCCCGGCCGCCAAGGCGCAGGTGGTTGGGTGGCCGCCCGTGAGG
TCCTACAGGAAGAGCTGCTTCCAGCAGGCGAGCAGCAAGACCAAGGAGGCCGCGCCGGCACCTGTGGTGGTGAAGCAGGA
GGAGGCTGCCGTTGCCGCGGCGCCGCCCGCCGCCGCAGCCGCGGGCGGATCACTGTACGTGAAGGTGAGCATGGACGGAG
CCCCCTACCTGAGGAAGATCGACCTCAAGATGTACAAGGGCTACCGCGAGCTCAGGGAGGCCCTGGAGGCCATGTTCCTC
GGCTTCTCCGGCGACGCAGGCAGCGTGAACCCGTCGGACTTCGCCGTGACCTACGAGGACAAGGACGGCGACCTCATGCT
CGTCGGCGACGTGCCCTTCGGGTAAGTTCATGCATCCGAGATACTACATATGATTTGGTTTGGTTGGAATTTTTAAATC-
TCAGTACGGTGTCTTATGATGATTTTTTTGTCGATTTGCAGGATGTTCATGAGCACTTGCAAGAGGATGAGGATCATGAA
GGGATCCGAAGCAAGAGGCCTAGGATCATCAAAGGAGTGAAAATGGAATCTATCTACGAAGAACACGCAACATGCCATGG
GTGCATGTGTGCAACATGGAGGAATTCTTTTGTTCTTTTGGGCATGTTGTCGACTCATCTACCACAGTGCTACTCTTCAA
GGCAAAGACGCAAGCTGATTCGAGTGGAGTTTTATTTTTATTTTGTTTTTT-AAAATAGGTGTTAGCAACACAAAAGGAG
TGGAGATCCGTTCGAGTTGAATCGGATCTCCATGTGTGTTTGTACAAAGAAAACAGCTTTCTTTCCGTGTTAAGCCATGT
CAATGGTTGGTTGATGTCTCCCTTGAGTTTGGTTATATCAAAGGTTGCAAGAAAATCTCATTCGTGGGCATCAGTTTG-T
GCAATCATCTCAAACCATGCTAAGCATGAACTTGACCCCCTTAATAACTAA--TGCTACAAAAATGAGACCAAAATGTTA
CACAGAGTCAGACATGCGTGTCCTCTCAGGCTCTCATCATCAATCACTTG----CAAAAAAGATGGTTAACCAAGCAAGG
CTCCAAATTTTTTTAATGAGACAAATCTTGCTAGCAAGATCCAAATGAATGATGT--------GTATGGGGAATGCGTCC
AATTTCTTTTCCTTTCTCTTTTACCGAGCACTTTGTCCGGGCAAATTTATTTACACGTGCACTGGAGATGAACAGGAACA
AGATTGGGCCACATGCATGAGCCACTTGTCAAAGTGGTGACAAAAGGGCAGAGTTAA-----------------------
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------------------------TTAGCCAGCCCGGATGAAACAGTTA------ACCAGGGCTGGTCAAGAGACAGACT
CTCCTC---GATGAGTAGTGCTAAATCTGGGTGTCTGCACTGCTGCTCCCATTCATTCATTCAGGGGTAACATGCACCGG
CCGGCCGGCCGACAGGGTACATGTGGTGCACATGAGTCTCGAGGTTGTGGTCAAGACTAGTTAGAGAGAGAAGATGAGAG
AGATGGAGAGCATCCAAAGCAACTCAAGAGTTGTATGTAGC
>SNPs
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----SS--------------------------------------------------------------------------
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------S-------------------------------------------------------------------------
-------------------------------------S------------------------------------------
----------------------------------------------------SS-S----------S-------------
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------S-S-SS--------------------------------------------------------------------
----------S---------------------------------------------------------------------
------------------------------------------------S-------------------------------
-S-----------------------------------------------------------SSSSSSSSSSS--------
--------------------SSS--SS----------------------------S------------------------
-------------------------------------------------------------------S-------S----
--------------S-----------------------------------------------------------------
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---------------------------------------S------S------S--------------S-----------
----S-S-----------------------------S--------S----------------------------------
----S---------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
---S-------------------------------------------------------S-----S-------------S
------S-------------------------------------------------------------------------
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----------------------------------------------------S---------------------------
--------S-----------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------SS-----------------------S-----S------SS----S--------S-------------
------SS-SSSSS---------------------------------------SS--S-SSS--------S---------
-------SS----------------------S-------------S----------------------------------
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---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-----------S-------------SSSSSS-----S--S--------S----S--
----S---------------------------------------------------------------------------
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>forward_647
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-------------------------------------------------------------------GCTATCGGGTCAA
GTGCAGT-------------------------------------------------------------------------
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>reverse_2656
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---------------AAGCCAGTGCCATGTCATCT---------------------------------------------
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