>input_sequence_60427
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---------------------------------------------------------ATGGGTTCCGTCTCCTACGTCCT
TGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAAGGTGCCGCCGGGCCCCAACATCACCACCA
ACTACAACAACCAGTGGCTCTCAGCCAAGGCCACCTGGTACGGCAGGCCCACCGGCTCCGGCCCCAAAGACAACGGTACT
CCCTCCGTCCGAAAATACTTGTCATCAAAATGAACAAAAAAGGATGTATCTAGAACTAAAATACATCTAAATACATCCTG
TTTTATTTATTTTGATGACAAGTATTTCCGGACGGAGGGAGTACGTCGTATGATCCATTTGTACTACATTCCATTTTCTT
GGATTGCAATTTGCAATCTTGCTCGGTGGGTATACTTAGGAATAGTTGCGCGCGCATGCAGGCGGCGCGTGCGGGATCAA
GGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGGCT
CCTGCTACGAGGTACGTA------CTACTCCGTCCACGTCGTTC---AGAT---CTTCTATTTGATCGGCTGAGCGAACG
CAAACGTACTTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCGCCGCCGTGCTCCGACAAGCCCATCACCATCTTCA
TCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCACGGCCTTCGGCGCCATGGCCACGCCC
GGGAAGGAGCAGACGCTCCGGTCGTTCGGGGAGCTCGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCTCCCGGCAC
CAAGATCACCTTCCATGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTTAAGTTCGTCTCCGACGATGGCG
ACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGAGG
TGGGACGGCGCCAAGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAGGA
CGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACACGTCAAATGTCCAGTTCTAG----------------------
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>chr1B_1_TraesCS1B01G222300
GTAGGTCACTTTGCTTTGCCGGGCGTGCAGGTCATGTTCTACATGACGTTCTACCTCTCAATTTCTGCAACACTATCCAT
GTTGCAAAAGTCCTTCCGCAATATTATCTGTGTTGCAAAAAGTGAAGACGGAAAAAAAATCTGCAACACAATCTCCGTTG
AATATTTATGCAACATCGGCTCTGTTTCCATGGGTTCTGCAACAATGACTTTGTTGCAATAATGAGGATGAGGGTGGGCC
GCAAGATAGACTAGATCTTACCGTTGTTGAGGTGGTGGATCTTTTCAGATTATCCGTCGGTAGATGCGTAGCGCTGCCCT
TGATGATTTGCCTCAGGCTTATTTTAATGGGCAGACCCTATCCGTCATGCTTAAAGTTAGAAGAAAAG-TGGGGCAAGAG
ATTCAATTTCTGCAGGCCTACACCGAACGTTTTGTATCGACGGTGTAGCGCACGCATGCCATGGACCGCGAGAGTATACC
ACATGCAGATGCAGGGGTTCACTGACACGTTGCTGCACGTTGATGACAAGTGCAT-GGATAATGTTCGAGCCACGGGAAA
------CTAGGAATCGCGTAAACCCAACCATCCTGGCGTTTCTCAAAAAAAAAAAACCATCCTGGCGTGCACTAGCTGGA
AAATCATCAAGCAGTACACCACAAACGTTATAGGGATCGCATTACCGCGACACAACATCTGTTACATCCAAATTGATTTC
CAAATGTAAATGCAGAATCTACGGATCGAGAACGGAATAAACTGCGAGTCGGTTTCCTTAGCTAGCTA---GCTGTGAAC
TGGTCGTCGTCG-CGCGCGCGCATGCGCAGCACCAACGCATGACCAAACCGCCGCTCCGCCGATCGCGTCGCCGCTCCG-
----CCGCGCGCGCGCGCGCTGACGCGGCCGCTGATCCATCCGTTCCGCCTACAAATACCGCCCGCCGCTGCACGGCCCT
TCACCACCTACTGACACTCACTCACAAGTCACAACAAACACGATCGACACGGTCGATATGGGTTCCGTCTCCTACGTCCT
TGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAAGGTGCCGCCGGGCCCCAACATCACCACCA
ACTACAACAACCAGTGGCTCTCAGCCAAGGCCACCTGGTACGGCAGGCCCACCGGCTCCGGCCCCAAAGACAACGGTACT
CCCTCCGTCCGAAAATACTTGTCATCAAAATGAACAAAAAAGGATGTATCTAGAACTAAAATACATCTAAATACATCCTG
TTTTATTTATTTTGATGACAAGTATTTCCGGACGGAGGGAGTACGTCGTATGATCCATTTGTACTACATTCCATTTTCTT
GGATTGCAATTTGCAATCTTGCTCGGTGGGTATACTTAGGAATAGTTGCGCGCGCATGCAGGCGGCGCGTGCGGGATCAA
GGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGGCT
CCTGCTACGAGGTACGTA------CTACTCCGTCCACGTCGTTC---AGAT---CTTCTATTTGATCGGCTGAGCGAACG
CAAACGTACTTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCGCCGCCGTGCTCCGACAAGCCCATCACCATCTTCA
TCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCACGGCCTTCGGCGCCATGGCCACGCCC
GGGAAGGAGCAGACGCTCCGGTCGTTCGGGGAGCTCGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCTCCCGGCAC
CAAGATCACCTTCCATGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTTAAGTTCGTCTCCGACGATGGCG
ACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGAGG
TGGGACGGCGCCAAGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAGGA
CGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACACGTCAAATGTCCAGTTCTAGAGCCT--GCAACTCAATGCCTC
AGATCCATTTAGCCCAGTTCCAATCCTCTTTTGTTTAGGCTTTCTTTTT-GGCTATTGCATTTACTAGCCACATAGCCTC
AGTTTTTTTTACTAGCCACATAAACTAAAATCATGTA----GATTCATGTGCACGGCGTGCTTTTATCTTGTTTAGGATT
CTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTTATTTAGTTGAGTTTGATCCATTTCTTACCACCAGTCG
TGATCTGCTGACGGTCA--TTGCCATTTCATTTTTTTTCTCTCTCTTACGACATA------GAAGTATGGAACAATGGCC
GCACCTGATTCTAAATTGAGCTGCACCCCTACCTGATTCACAAATCACAAGGTGCAACTAG----GTTATGTTTAGGGTT
GAACGACTAGCATCGACCAAAGCTTTGAAGCTGCAACTACTACTTTGTACTCTCTCGGTTCCGAATTACTTGTCTTAGAT
TTATCTAGATACGGATGTATCTAGCACTAAAATGAGTCTAGATACATCTGTATGTAGACAAATCCAAGACAAGTAATTCG
GAACGAGGGAGTAGCTGTGTTCGAGGGATGTCCGGCAAACACTAGACTTCTCTATTTATATATATA-TTTAAA-------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAGACGT
AAGGTTATATAAGTATATC---------TCGTTCACTATATATCATCGTCCAAGCCCCACTACTTACGTCCTCTCCTCTT
CCCCCTCTCTGTTTTCCTTTTTTTTTCCTTCCATCTCTGATTTTTCCCACTAGTTTT-CGTTCAAACCCAAACACATCTT
ATTGGTTTACCAAATGAAATCGTGTATTATTTAGCAAGTCAATAAGCATTGACTTCTTTTTACGAAAGTGTT--TTCAAT
TGCCAGCTAAAGTATATTTTTTGGTATGTAATCATGATGATTGTGTATAAAATACATACGGGCAATTATCTATAGAAGTA
TATCGTTGGAGACAATCCTAGAGACAAAAGGATGGAGATTGCTCTTCTT
>chr1A_356
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-----------------------------------CCCCATCCGTCATGTTTAAAGTTAGAAAAAAAAATGAGGCAAAAG
ATCCAATTTCTCCAGGCCTACACCGAACGTTTTGTATCGACGGTGCAGCGCACGCATGCCATGGATCGCGAGAGTATACC
ACATGCAGATGCAGGGGTTCACTGACACGTTGTTGCACGTCGATGATAAGTGCAGGGGATAATGTTCCAGCCACAGGAAA
GTATAGCTAGGAATCGCGTAAATCCATCCATCCTGGCGT-----------------------------------------
--------------------------------------GCGTTACCGCGGCACAATATTTACTGCGAGTAGG----TTTC
CTAATGTAAATGCAGAATCTACAGATCGAGAACGGAATAAACTGCGAGTCGGTTTCCT-----AGCTA---GCTGTGAAC
TGGTCGTCGTCG-CGCGCGCGCATGCGCAGCACCAACGCATGACCAAACCGCCGCTCCGCCGATCGCGTCGCCGCCCCGC
CGCCCCGCGCGCGCGCGCGCTGACGCAGCCGCTGATCCATCCGTCTCGCCTACAAATACCGCCCGCCGCCGCACGGCCCT
TCACCACCTACTGACACTCACACGCAACAACACACGAGTCCATCGA------TCGATATGGGTTCCGTCTCCTACGTCCT
GGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAGCGTGCCGCCGGGCCCCAACATCACCACCA
ACTACAACAACCAGTGGCTCCCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTACG
ACGTAATATCCATG------------------------------------------------------------------
------------------------------------------------------------------CATTCCGTTTTCTT
GGATCGCGAT-------CTTGCACGGAGCCAGTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATCAA
GGACGTGAACCTGGCCCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGGCT
CCTGCTACGAGGTACGCACCACGTCTACTCCATCCACGTCGTTTACTAGAT---CTTCTACTTGATCGGCTGAGCGACCG
CCAAAGTACGTGCGTGGATGGGTCGCAGATCAAGTGCCAGAAGCCGTCGCCGTGCTCCGACAAGCCCGTCACCATCTTCA
TCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGCCC
GGGAAGGAGCAGACGCTCCGCTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGCAC
CAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGGCG
ACGTCGTGCAGATGGACATCCAGCAGAGCAAGTCGCCCGCGTGGATTCCGCTGACCTTGTCGTGGGGCGCCATCTGGAGG
TGGGACGGCGCCACGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAGGA
CGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAATATCCAGTTCTAGAGCCTCTGCGACTCAATGCCTC
AGATCCATTTAGCACAGTTCGAATC--CTTTTGTTTAGGCTTTCTTTTTTGGCTATTTCATTTACTATA-----------
------------TAGCCACATAAACTAAAATCATGTACGTAGATTCATGTGCACGCCGTGCTTTTATCTTGTTTAGGATT
CTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTAATTTAGTGGAGTTTGATCCATTTCTTACCACCAGTTG
TGATCTGCTGACGGTCATGTTGCCATTTCATTATTT-TCTCTCTCTTACGACATACTCCTAGAAGTATGGAACAATGGCC
GCACCTGATTCTAACTTGAGCCATACCCCTACCTGATTCACAAATCACAAGGTGCAACTAGCTAGGTTATGTTTAGGGTT
GAACGACTAGCATCGACCAAAGCTTTGAAGCGGCAACTACTACTTTGTA-------------------------------
--------------------------------------------------------------------------------
-------------GCT---------GGATGTCCGGCAAACACTAACCTTCTCTGTTTATGTACATATTTAAAACAGTTTT
GCTAAAGCACATCTAGATGTGTCATAAGTATTACACATCTAAGTCCTATGTCATTGATCTTACGTCGAGATTCGTGTGGA
TATTTCTTTTTTTTTTCTTTTCTCTTTATGCTTGATTCACTCACTTAGATGTGCAATAACTAGAGCACATCTAAAGACGT
AAGGTTTCATATTTCGCCCATCAGCGTTTCGCTCAC----TATCATCGTCCAAGCCCACT--------------------
---------------------------------------AGTTTTTCCACTAGTTTT-CGTTCAAACCCAAACACATCTT
ATTGGTTTACCAAATGAAGTCGTGTCTTATTTAGCAAGTCAATAAGCATCGACTTCTTTTTAAGAAAGTGTTGATTCAAT
TGCCAGCTAAAGTATATTTTTTGGTATGTAATCATGATGAGTGTGCACAAAATACATACGGACAATTATCTATAGAAGTA
TAGCATTGTAGACAATCCTAGAGACAGAAGGATGGAGATTGCTCTTCTT
>chr1D_671
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--------------------------------------GCATTACCGCGACACAATATTTACTACGAGTCGG----TTTC
CTACTGTAAATGCAGAATCTACGGATCGAGAAGGGAATAAACTGCGAGTCGGTTTCCTTAGCTAGCTACTCGCTATGAAC
CGGTCGTCGTCGTCGCGCGCGCATGCGCAGCACCAACGCATGACCAAACTGCCGCTCCGCCGATCCCGTCGCCGCTCCGC
CGC----CGCGCGCGCGCGCTGACGCAGCCGCTGATCCATCCGTTTCGCCTACAAATACCGCCCGCCGCCGCACGGCCCT
TCACCACCTACTGA----CACTCACAAGTCAGAACAAACACGATCGACACGGTCGATATGGGTTCCGTCTCCTACGTCCT
GGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCGAGGGTACCGCCGGGCCCCAACATCACCACCA
ACTACAACAACCAGTGGCTCTCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTACG
---TAATATCCATG------------------------------------------------------------------
------------------------------------------------------------------CATTCCGTTTTCCT
GGATCGCAAT-------CTTGCACGGGGCC-GTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATCAA
GGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGGCT
CCTGCTACGAGGTACGTACTACGTCTACTCCATCCATGTCGTTTACTAGATCTGCTTCTACTTGATCGGCTGAGCGAACG
CAAACGTACGTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCTTCGCCGTGCTCCGACAAGCCCATCACCATCTTCA
TCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGCCC
GGGAAGGAGCAGACGCTCCGGTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGCAC
CAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGGCG
ACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGAGG
TGGGACGGCGCCAAGCCGCTCAAGGCCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAGGA
CGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAGTGTCCAGTTCTAGAGCCT--GCAACTCAATGCCTC
AGATCCATTTAGCCCAGTTCCAATCCTCTTTTGTTTAGGCTTTCTTTTT-GGCTATTGCATTTACTAGCCACATAGCCTC
AGTTTTTTTTAGTAGCCACATAAACTAAAATCATGTACGTAGATTCATGTGCACGGCGTGCTTTTATCTTGTTTAGGATT
CTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTAATTTAGTTGAGTTTGATCCATTTCTTATCACCAGTCG
TGATCTGCTGACGGTCA--TTGCCATTTCATTTTTT-CCTCCGTCTTACGACATA------GAAGTATGGAACAATGGCC
GCACCTGATTCTAAATTGAGCTACACCCCTACCTCATTCACAAATCACAAGGTGCAACTAG----GTTATGTTTAGGGTT
GAACGACTAGCATCGACCAAAGCTTTGAAGCCGCAACTACTACTCTGTA-------------------------------
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-------------GCTGTGTTCAAGGGATGTCCGGCAAACACTAACCTTCTCATAT----TATATATTTAAAA-------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAGACGT
AAGGTTTTATATTTCGCCCATCAGCGTTTCGCTCACTATATATCATCGTCC--------------------TCTCCTCTT
CCCCCTCTTTGTTTTGCTTTTTTCC-CCTTCCATCTCTGATTTTTCCCACTAGTTTTACGTTCAAACCCAAACACATCTT
ATTGGTTTACCAAATGAAATCGTGTCTTATTTAGCAAGTGAATACGTGTTGACTTCTTTTTAAGAAAGTGTTGATTCAAT
TGCCAGCTAAAGTATATTT-TTGGTATGTAATCATGATGATTGTGTATAAAATACATACGGGCAATTATCTATAGAAGTA
TAGCGTTGTAGACAAGCCTAGAGACAGAAGGATGGAGATTGCTCTTCTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S------------S----S---S-----S--
--S--------S---------------------------------S-------------------S--------------
--------------------------------S-------S-----S-------S------------S------S-----
----------------------S---S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--S-SS---SSSS-SSSSSS----
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S------------------S-----------------------S----------
-------------------------------S------------------------------------------------
S-------------------------------------------------S-----------------------------
----------------------S----------------------S---------------------------------S
S-S-SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------
----S-----SSSSSSS-----S---S-SSSS-S----S-SS---S-SSSSSS---------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------S----------------S-------------------
---------S------------------------------------S---------------------------------
------------------------------------------------------S-------------------S-----
-----------------------S-----------S-----------------------------------S--------
---------------S-----------------------------------------S-----------------S----
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-------------------------------------S------------------------------------------
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-----------S--------------------------------------------------------------------
------------------------------------------S-------------------------------------
------------------------------------S-------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------S---------------------SS-------S-----S---------S----------
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------S----SS-SSSS-------------S-------------------------SSSSSSSSSSSSSS---------
--------S------S-------SSS------------------------------------------------------
-------------------------S------------------------------------S-----------------
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--S-----S-----------------S----------------------
>forward_194
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--------------ATCGGCTCTGTTTCCATGGG----------------------------------------------
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>reverse_1301
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--------------------AGTATTTCCGGACGGAGGGA----------------------------------------
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>forward_278
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------------------TACCGTTGTTGAGGTGGTGG------------------------------------------
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>reverse_1312
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-------------------------------ACGGAGGGAGTACGTCGTAT-----------------------------
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>forward_332
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------------------------------------------------------------------------GCTGCCCT
TGATGATTTGCC--------------------------------------------------------------------
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>reverse_1313
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--------------------------------CGGAGGGAGTACGTCGTATG----------------------------
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>forward_1200
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------------------------------------------------------------GCCCCAAAGACAACGGTACT
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>reverse_3030
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---------------------------------------------------------------------CCTCTCCTCTT
CCCCCTCTC-----------------------------------------------------------------------
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-------------------------------------------------
